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Paper Citation Record · LEDGER

Efficient inference of dynamic gene regulatory networks using discrete penalty

As of 8 August 2026, this Paper Citation Record lists 100 of 103 outbound references and 1 inbound Pith citation observation for arXiv:2507.23106.

A citation records a reference. It does not transfer a finding from one paper to another.

pith.paper-citation-record.v1
2507.23106 v1

Coverage vector

measured 100 of 103 reference resolution

Typed states for the displayed outbound observations.

Source: paper_references, paper_reference_links, observed 2026-08-06T11:09:42.879911Z

measured 101 of 101 standing notices

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measured 1 of 1 inbound itemization

Pith citing papers itemized under the disclosed page cap.

Source: paper_references, paper_reference_links, observed 2026-08-06T00:23:46.224409Z

measured 0 of 1 external citation measurements

A source-named dated measurement, never combined with another source.

Source: pith, observed 2026-08-06T00:23:47.773127Z

Reference resolution

100 of 103 outbound references displayed

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  • verified fuzzy56
  • unresolved25
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External citation measurements

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Outbound references

Observation 38ae59ce-ea79-4990-a462-a2c05bd6c0cb · outbound

This paper cites Network medicine: a network-based approach to human disease.

Efficient inference of dynamic gene regulatory networks using discrete penalty Network medicine: a network-based approach to human disease

Reference 1

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Observation 13db1251-d24d-4266-9a37-e93abbfb76ec · outbound

This paper cites Profiling cell identity and tissue architecture with single-cell and spatial transcriptomics.

Efficient inference of dynamic gene regulatory networks using discrete penalty Profiling cell identity and tissue architecture with single-cell and spatial transcriptomics

Reference 2

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Observation a46c9dfb-a7e7-4d43-b61f-df844c69d8bf · outbound

This paper cites Advancements in single-cell RNA sequencing and spatial transcrip- tomics: transforming biomedical research.

Efficient inference of dynamic gene regulatory networks using discrete penalty Advancements in single-cell RNA sequencing and spatial transcrip- tomics: transforming biomedical research

Reference 3

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Observation a06570c5-5292-41db-899a-7d25fa541c21 · outbound

This paper cites The dynamics and regulators of cell fate decisions are revealed by pseudotemporal ordering of single cells.

Efficient inference of dynamic gene regulatory networks using discrete penalty The dynamics and regulators of cell fate decisions are revealed by pseudotemporal ordering of single cells

Reference 4

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Observation a7c3dbdf-1f22-4bec-a432-44537953fa56 · outbound

This paper cites Network-based integration of multi-omics data for prioritizing cancer genes.

Efficient inference of dynamic gene regulatory networks using discrete penalty Network-based integration of multi-omics data for prioritizing cancer genes

Reference 5

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Observation 0c99b097-19e7-4ed5-a518-9ed02f4334df · outbound

This paper cites Topology-based metrics for finding the optimal sparsity in gene regulatory network inference.

Efficient inference of dynamic gene regulatory networks using discrete penalty Topology-based metrics for finding the optimal sparsity in gene regulatory network inference

Reference 6

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Observation 38344706-9f08-4321-991b-25daf3f241e4 · outbound

This paper cites Optimal Sparsity Selection Based on an Information Criterion for Gene Regulatory Network Inference.

Efficient inference of dynamic gene regulatory networks using discrete penalty Optimal Sparsity Selection Based on an Information Criterion for Gene Regulatory Network Inference

Reference 7

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Observation c75286a9-fda1-4c12-88cc-248b43daf91b · outbound

This paper cites l {0} sparse inverse covariance estimation.

Efficient inference of dynamic gene regulatory networks using discrete penalty l {0} sparse inverse covariance estimation

Reference 8

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Observation 7464a245-6d90-4b30-92ce-9f3ad51c1583 · outbound

This paper cites Scalable inference of sparsely-changing Gaussian Markov random fields.

Efficient inference of dynamic gene regulatory networks using discrete penalty Scalable inference of sparsely-changing Gaussian Markov random fields

Reference 9

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Observation 55b3aaec-ca59-4362-968a-e282971de808 · outbound

This paper cites Sparse inverse covariance estimation with the graphical lasso.

Efficient inference of dynamic gene regulatory networks using discrete penalty Sparse inverse covariance estimation with the graphical lasso

Reference 10

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Observation 698cf1e4-cc9a-4b3a-a675-a68552035121 · outbound

This paper cites The joint graphical lasso for inverse covariance estimation across multiple classes.

Efficient inference of dynamic gene regulatory networks using discrete penalty The joint graphical lasso for inverse covariance estimation across multiple classes

Reference 11

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Observation 7bfdcd86-fd00-4ff4-86dc-dde11db619f0 · outbound

This paper cites Network inference via the time-varying graphical lasso.

Efficient inference of dynamic gene regulatory networks using discrete penalty Network inference via the time-varying graphical lasso

Reference 12

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Observation 7fe44771-6cd4-4c2b-85c4-66c654bcbce1 · outbound

This paper cites Breakdown in nonlinear regression.

Efficient inference of dynamic gene regulatory networks using discrete penalty Breakdown in nonlinear regression

Reference 13

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Observation bc33d46a-0b08-427c-9d40-0a83bfa7ba0b · outbound

This paper cites Robust Regression and Outlier Detection.

Efficient inference of dynamic gene regulatory networks using discrete penalty Robust Regression and Outlier Detection

Reference 14

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Observation 87310322-c32d-4ca7-9ac8-70d4034f5ece · outbound

This paper cites Deleting outliers in robust regression with mixed integer program- ming.

Efficient inference of dynamic gene regulatory networks using discrete penalty Deleting outliers in robust regression with mixed integer program- ming

Reference 15

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Observation 9cfb9601-46af-4751-ba3f-50a6a2b31c73 · outbound

This paper cites Integer Programming for Learning Directed Acyclic Graphs from Non-identifiable Gaussian Models.

Efficient inference of dynamic gene regulatory networks using discrete penalty Integer Programming for Learning Directed Acyclic Graphs from Non-identifiable Gaussian Models

Reference 16

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Observation 3c5f4fd4-4412-4b75-80c8-9b164e57b89c · outbound

This paper cites Consistent second-order conic integer programming for learning Bayesian networks.

Efficient inference of dynamic gene regulatory networks using discrete penalty Consistent second-order conic integer programming for learning Bayesian networks

Reference 17

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Observation 30e07c2d-cb33-4e47-8078-4b8d348ca1b2 · outbound

This paper cites Integer Programming for Learning Directed Acyclic Graphs from Continuous Data.

Efficient inference of dynamic gene regulatory networks using discrete penalty Integer Programming for Learning Directed Acyclic Graphs from Continuous Data

Reference 18

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Observation 58893a34-e228-4307-96b4-7571dab7afb5 · outbound

This paper cites Scalable network estimation with L0 penalty.

Efficient inference of dynamic gene regulatory networks using discrete penalty Scalable network estimation with L0 penalty

Reference 19

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Observation 438136f6-4907-44fe-9171-ac458827e22a · outbound

This paper cites A parametric approach for solving convex quadratic optimization with indicators over trees.

Efficient inference of dynamic gene regulatory networks using discrete penalty A parametric approach for solving convex quadratic optimization with indicators over trees

Reference 20

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Observation 1bb220c1-e532-491b-bb67-54324046c777 · outbound

This paper cites Joint Structural Estimation of Multiple Graphical Models.

Efficient inference of dynamic gene regulatory networks using discrete penalty Joint Structural Estimation of Multiple Graphical Models

Reference 21

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Observation 93b210a2-569f-4812-9ae4-e08e15b1e982 · outbound

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Efficient inference of dynamic gene regulatory networks using discrete penalty A Fast and Scalable Joint Estimator for Learning Multiple Related Sparse Gaussian Graphical Models

Reference 22

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Efficient inference of dynamic gene regulatory networks using discrete penalty A constrained ℓ 1 minimization approach to sparse precision matrix estimation

Reference 23

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Efficient inference of dynamic gene regulatory networks using discrete penalty Elementary estimators for graphical models

Reference 24

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Efficient inference of dynamic gene regulatory networks using discrete penalty Joint estimation of multiple precision matrices with common structures

Reference 25

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Observation 98334d44-4ea7-47dd-944b-96f97a472313 · outbound

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Efficient inference of dynamic gene regulatory networks using discrete penalty Solution Path of Time-varying Markov Random Fields with Discrete Regularization

Reference 26

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Efficient inference of dynamic gene regulatory networks using discrete penalty BEST SUBSET SELECTION VIA A MODERN OPTIMIZATION LENS

Reference 27

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Efficient inference of dynamic gene regulatory networks using discrete penalty Certifiably optimal sparse regression via mixed- integer optimization

Reference 28

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Efficient inference of dynamic gene regulatory networks using discrete penalty On polynomial-time solvability of combinatorial Markov random fields

Reference 29

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Efficient inference of dynamic gene regulatory networks using discrete penalty Graph learning with tridiagonal Hessians: Efficient algorithms and applications

Reference 30

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Efficient inference of dynamic gene regulatory networks using discrete penalty Real-time solution of quadratic optimization problems with banded matrices and indicator variables

Reference 31

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This paper cites Efficient inference of spatially-varying Gaussian Markov random fields with applications in gene regulatory networks.

Efficient inference of dynamic gene regulatory networks using discrete penalty Efficient inference of spatially-varying Gaussian Markov random fields with applications in gene regulatory networks

Reference 32

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Efficient inference of dynamic gene regulatory networks using discrete penalty SCANPY: large-scale single-cell gene expression data analysis

Reference 33

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Efficient inference of dynamic gene regulatory networks using discrete penalty Dictionary learning for integrative, multimodal and scalable single-cell analysis

Reference 34

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Efficient inference of dynamic gene regulatory networks using discrete penalty A comparison of single-cell trajectory inference methods

Reference 35

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Efficient inference of dynamic gene regulatory networks using discrete penalty Graphical models, exponential families, and variational inference

Reference 36

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Efficient inference of dynamic gene regulatory networks using discrete penalty Computer solution of large sparse positive definite

Reference 37

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Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-07T06:34:17.273281+00:00.

source=pdf_text observed=2026-08-06T11:09:40.458412Z digest=sha256:5446f7019c6b44452b0583664a875d37e1d5b94d3ff4e4e011cf31aceb1d5804

Observation 21be3eb5-48e0-47b3-b5dc-85cdb00313cd · outbound

This paper cites Chordal graphs and semidefinite optimization.

Efficient inference of dynamic gene regulatory networks using discrete penalty Chordal graphs and semidefinite optimization

Reference 38

Resolution
verified fuzzy
raw_fallback, observed 2026-08-06T11:09:44.374233Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-07T06:34:17.273281+00:00.

source=pdf_text observed=2026-08-06T11:09:40.564891Z digest=sha256:6a55dae20bdd20166c9b99a9d48cc5198e5ce68e9676af8a29c2d0fba455fb4b

Observation 42bdfee9-cd47-424a-b5ea-1edd00e97613 · outbound

This paper cites Model selection and estimation in the Gaussian graphical model.

Efficient inference of dynamic gene regulatory networks using discrete penalty Model selection and estimation in the Gaussian graphical model

Reference 39

Resolution
verified fuzzy
raw_fallback, observed 2026-08-06T11:09:44.359820Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-07T06:34:17.273281+00:00.

source=pdf_text observed=2026-08-06T11:09:40.705099Z digest=sha256:d7bc545a628879592f0980daadc4dc2ca34aed58fa1047f2314e0f0b555f63f2

Observation 80e778cf-32b0-4214-9e97-0ad2ea0f0871 · outbound

This paper cites Extended Bayesian information criteria for Gaussian graphical models.

Efficient inference of dynamic gene regulatory networks using discrete penalty Extended Bayesian information criteria for Gaussian graphical models

Reference 40

Resolution
verified fuzzy
raw_fallback, observed 2026-08-06T11:09:44.344333Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-07T06:34:17.273281+00:00.

source=pdf_text observed=2026-08-06T11:09:40.863657Z digest=sha256:4e91fe56736cc245529b7abf64427d6cf2650699a218f9655c96ad562641e2cc

Observation 3dd31864-c751-4088-8bf3-8b6ec6199f21 · outbound

This paper cites A fast and scalable joint estimator for learning multiple related sparse Gaussian graphical models.

Efficient inference of dynamic gene regulatory networks using discrete penalty A fast and scalable joint estimator for learning multiple related sparse Gaussian graphical models

Reference 41

Resolution
verified fuzzy
raw_fallback, observed 2026-08-06T11:09:44.329967Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-07T06:34:17.273281+00:00.

source=pdf_text observed=2026-08-06T11:09:41.029538Z digest=sha256:d9be0271b2243a304b25acd5a0733c6741a6dc234688524930cd845d8ce13a64

Observation fbfb682b-cda7-4d2e-a3ea-e74e3892935f · outbound

This paper cites GRNBoost2 and Arboreto: efficient and scalable inference of gene regulatory networks.

Efficient inference of dynamic gene regulatory networks using discrete penalty GRNBoost2 and Arboreto: efficient and scalable inference of gene regulatory networks

Reference 42

Resolution
verified fuzzy
raw_fallback, observed 2026-08-06T11:09:44.316629Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-07T06:34:17.273281+00:00.

source=pdf_text observed=2026-08-06T11:09:41.112983Z digest=sha256:fc39f7c57d48f242cbb5f80e635a8ad251b4bbbaedd94fe20ab32c9ce44b4710

Observation 37a3f6a9-3f88-49cc-9b6c-03e4bce5e214 · outbound

This paper cites Statistical mechanics of complex networks.

Efficient inference of dynamic gene regulatory networks using discrete penalty Statistical mechanics of complex networks

Reference 43

Resolution
verified fuzzy
raw_fallback, observed 2026-08-06T11:09:44.302972Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-07T06:34:17.273281+00:00.

source=pdf_text observed=2026-08-06T11:09:41.240124Z digest=sha256:7c3fe9495709b1382f1eeb22894fce2b2a7033149f476c00f8232da39fd996ba

Observation edcd76c7-e38b-4e6a-ab6f-2e1a4268ab6c · outbound

This paper cites Glioblastoma heterogeneity at single cell resolution.

Efficient inference of dynamic gene regulatory networks using discrete penalty Glioblastoma heterogeneity at single cell resolution

Reference 44

Resolution
verified fuzzy
raw_fallback, observed 2026-08-06T11:09:44.287722Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-07T06:34:17.273281+00:00.

source=pdf_text observed=2026-08-06T11:09:41.394008Z digest=sha256:2920958e5f20370af6df1404161da45f3ffc59d84d44a8bf44a1387d82bf6b0b

Observation dea0f290-02b6-41ab-ae78-0796f7263017 · outbound

This paper cites An integrative model of cellular states, plasticity, and genetics for glioblastoma.

Efficient inference of dynamic gene regulatory networks using discrete penalty An integrative model of cellular states, plasticity, and genetics for glioblastoma

Reference 45

Resolution
verified fuzzy
raw_fallback, observed 2026-08-06T11:09:44.273787Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-07T06:34:17.273281+00:00.

source=pdf_text observed=2026-08-06T11:09:41.507893Z digest=sha256:bcdc2980d6ccc95d5362ad2367620e611ab49d3b7da0f26b1098ad9c964a902c

Observation 530ab0fe-b733-43ee-beff-7bddc24b4b89 · outbound

This paper cites Pathway-based classi- fication of glioblastoma uncovers a mitochondrial subtype with therapeutic vulnerabilities.

Efficient inference of dynamic gene regulatory networks using discrete penalty Pathway-based classi- fication of glioblastoma uncovers a mitochondrial subtype with therapeutic vulnerabilities

Reference 46

Resolution
verified fuzzy
raw_fallback, observed 2026-08-06T11:09:44.259586Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-07T06:34:17.273281+00:00.

source=pdf_text observed=2026-08-06T11:09:41.671159Z digest=sha256:844221fa71f4dd1ce0372c240d276948a08de369f44daeea9fdacd7d30f045ab

Observation 83f31713-8555-4d47-ae6f-e950d175780c · outbound

This paper cites Cancer cell heterogeneity and plasticity: A paradigm shift in glioblastoma.

Efficient inference of dynamic gene regulatory networks using discrete penalty Cancer cell heterogeneity and plasticity: A paradigm shift in glioblastoma

Reference 47

Resolution
verified fuzzy
raw_fallback, observed 2026-08-06T11:09:44.245046Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-07T06:34:17.273281+00:00.

source=pdf_text observed=2026-08-06T11:09:41.831718Z digest=sha256:cd2db19992c6943b7a5a241339af36424c7dd68fc1eb1f386cbd3a9a67c6836a

Observation 46975613-0f57-4b1b-87b9-8aa507ac1461 · outbound

This paper cites Collagen in the central nervous system: contributions to neurodegeneration and promise as a therapeutic target.

Efficient inference of dynamic gene regulatory networks using discrete penalty Collagen in the central nervous system: contributions to neurodegeneration and promise as a therapeutic target

Reference 48

Resolution
verified fuzzy
raw_fallback, observed 2026-08-06T11:09:44.230196Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-07T06:34:17.273281+00:00.

source=pdf_text observed=2026-08-06T11:09:41.987000Z digest=sha256:77437798ca3e6f8d4983fa403b98f26ccf77f0ef8065bfaa717f1bae34f3033c

Observation 065ee1a3-b53c-468c-8fdd-60a789ca5ec0 · outbound

This paper cites Phosphorylation, dephosphorylation, and multiprotein assemblies regulate dynamic behavior of neuronal cytoskeleton: a mini-review.

Efficient inference of dynamic gene regulatory networks using discrete penalty Phosphorylation, dephosphorylation, and multiprotein assemblies regulate dynamic behavior of neuronal cytoskeleton: a mini-review

Reference 49

Resolution
verified fuzzy
raw_fallback, observed 2026-08-06T11:09:44.215280Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-07T06:34:17.273281+00:00.

source=pdf_text observed=2026-08-06T11:09:42.108591Z digest=sha256:b48bae8aa8bc40b6ecffd69c16a918da8dd5ffe0bf86652ec3123195fc1576fc

Observation 6830dbe2-308c-4a25-94fa-3331ede75d5b · outbound

This paper cites Phenotypic and functional consequences of haploinsufficiency of genes from exocyst and retinoic acid pathway due to a recurrent microdeletion of 2p13.

Efficient inference of dynamic gene regulatory networks using discrete penalty Phenotypic and functional consequences of haploinsufficiency of genes from exocyst and retinoic acid pathway due to a recurrent microdeletion of 2p13

Reference 50

Resolution
verified fuzzy
raw_fallback, observed 2026-08-06T11:09:44.201169Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-07T06:34:17.273281+00:00.

source=pdf_text observed=2026-08-06T11:09:42.113068Z digest=sha256:7511fc66e9568620936ec8d9b1d7976dd46d7f9c103fd91f85cf18ee10d622b5

Observation 2584dea9-5aea-4d95-9fe5-becbf299d3ee · outbound

This paper cites Exploring the pathological mechanisms underlying Cohen syndrome.

Efficient inference of dynamic gene regulatory networks using discrete penalty Exploring the pathological mechanisms underlying Cohen syndrome

Reference 51

Resolution
verified fuzzy
raw_fallback, observed 2026-08-06T11:09:44.186684Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-07T06:34:17.273281+00:00.

source=pdf_text observed=2026-08-06T11:09:42.204423Z digest=sha256:f247915786b4a9386a1ef19797e7f762d6da5ec63644c239ed988d67befa21bc

Observation e6617c95-c3bb-4547-9fc9-c992b2689b31 · outbound

This paper cites Single-cell transcriptomics unveils gene regulatory network plasticity.

Efficient inference of dynamic gene regulatory networks using discrete penalty Single-cell transcriptomics unveils gene regulatory network plasticity

Reference 52

Resolution
verified fuzzy
raw_fallback, observed 2026-08-06T11:09:44.172117Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-07T06:34:17.273281+00:00.

source=pdf_text observed=2026-08-06T11:09:42.352617Z digest=sha256:13a29817d25b79b8b5a8eef677f0d949bbf03e89f364854ab24954a15bffd867

Observation 46fbfda2-d84d-4808-8ae3-34a8828cd722 · outbound

This paper cites Transcription factor BACH1 in cancer: roles, mechanisms, and prospects for targeted therapy.

Efficient inference of dynamic gene regulatory networks using discrete penalty Transcription factor BACH1 in cancer: roles, mechanisms, and prospects for targeted therapy

Reference 53

Resolution
verified fuzzy
raw_fallback, observed 2026-08-06T11:09:44.158086Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-07T06:34:17.273281+00:00.

source=pdf_text observed=2026-08-06T11:09:42.479568Z digest=sha256:cf7793a85aa90c3f2af665d2ecb0bf2ecfe8d25ce54848247aa2b7e2169635b4

Observation 6198e56a-69d3-4565-8265-4bcc27a75776 · outbound

This paper cites Single-cell multi-omics sequencing uncovers region-specific plasticity of glioblastoma for complementary therapeutic targeting.

Efficient inference of dynamic gene regulatory networks using discrete penalty Single-cell multi-omics sequencing uncovers region-specific plasticity of glioblastoma for complementary therapeutic targeting

Reference 54

Resolution
verified fuzzy
raw_fallback, observed 2026-08-06T11:09:44.142869Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-07T06:34:17.273281+00:00.

source=pdf_text observed=2026-08-06T11:09:42.544115Z digest=sha256:edd33305c5c7d72cfcbc9eea16db89103d7d37aaacb931c630ad4f5cf06b7af9

Observation 881fb040-4bc8-46f5-aa00-4f868d90cfe8 · outbound

This paper cites TopicNet: a framework for measuring transcriptional regulatory network change.

Efficient inference of dynamic gene regulatory networks using discrete penalty TopicNet: a framework for measuring transcriptional regulatory network change

Reference 55

Resolution
verified fuzzy
raw_fallback, observed 2026-08-06T11:09:44.127861Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-07T06:34:17.273281+00:00.

source=pdf_text observed=2026-08-06T11:09:42.588905Z digest=sha256:fce92b58051e6c4d0b5422e7a75dd0ed412e961c37257a67587d3d9486b5a7d2

Observation e89e28ba-f009-4c68-bba9-f17f53ef47b3 · outbound

This paper cites Inference of cell type-specific gene regulatory networks on cell lineages from single cell omic datasets.

Efficient inference of dynamic gene regulatory networks using discrete penalty Inference of cell type-specific gene regulatory networks on cell lineages from single cell omic datasets

Reference 56

Resolution
verified fuzzy
raw_fallback, observed 2026-08-06T11:09:44.111819Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-07T06:34:17.273281+00:00.

source=pdf_text observed=2026-08-06T11:09:42.640787Z digest=sha256:c30befcb3ceb3b10509a9ea13f1af59952911c6a7454412659e3c7823b05616c

Observation 4eea12a2-2ec1-4538-b573-7a607c8cf7f9 · outbound

This paper cites topicmodels: An R package for fitting topic models.

Efficient inference of dynamic gene regulatory networks using discrete penalty topicmodels: An R package for fitting topic models

Reference 57

Resolution
verified fuzzy
raw_fallback, observed 2026-08-06T11:09:44.097771Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-07T06:34:17.273281+00:00.

source=pdf_text observed=2026-08-06T11:09:42.655778Z digest=sha256:ac26a2e0a972a3308330cadbd2febdc689df0faecb2b279e7ecca790846e8181

Observation 97c24257-87ad-4bd9-b5fd-fccbb52c0b1a · outbound

This paper cites Package ‘ldatuning’; 2016.

Efficient inference of dynamic gene regulatory networks using discrete penalty Package ‘ldatuning’; 2016

Reference 58

Resolution
verified fuzzy
raw_fallback, observed 2026-08-06T11:09:44.083639Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-07T06:34:17.273281+00:00.

source=pdf_text observed=2026-08-06T11:09:42.663102Z digest=sha256:066de712a190a37fe354a1e0d22e385f39802cad454e79ba3cdec3d1dfeca83d

Observation 2724ffd9-341a-41b7-868b-3a0c86be1cf4 · outbound

This paper cites ZHX2 Interacts with Ephrin-B and regulates neural progenitor maintenance in the developing cerebral cortex.

Efficient inference of dynamic gene regulatory networks using discrete penalty ZHX2 Interacts with Ephrin-B and regulates neural progenitor maintenance in the developing cerebral cortex

Reference 59

Resolution
verified fuzzy
raw_fallback, observed 2026-08-06T11:09:44.069171Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-07T06:34:17.273281+00:00.

source=pdf_text observed=2026-08-06T11:09:42.667535Z digest=sha256:b70eb17646b159dee8baa8aeb8072784de56482873678ac2a67128786a6fb35c

Observation 6d4f5bc2-b3d4-42b6-b59a-81da3ebc9fe6 · outbound

This paper cites Transcription factor AP2 epsilon (Tfap2e) regulates neural crest specification in Xenopus.

Efficient inference of dynamic gene regulatory networks using discrete penalty Transcription factor AP2 epsilon (Tfap2e) regulates neural crest specification in Xenopus

Reference 60

Resolution
verified fuzzy
raw_fallback, observed 2026-08-06T11:09:44.053733Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-07T06:34:17.273281+00:00.

source=pdf_text observed=2026-08-06T11:09:42.672367Z digest=sha256:b53355bbf5b2931782f483a8288a83d0ea0c8ed271c7996b3dcf56c1bff46b98

Observation afb56674-9ed0-4724-9083-f0ae8b83dca7 · outbound

This paper cites The expanding roles of Nr6a1 in development and evolution.

Efficient inference of dynamic gene regulatory networks using discrete penalty The expanding roles of Nr6a1 in development and evolution

Reference 61

Resolution
verified fuzzy
raw_fallback, observed 2026-08-06T11:09:44.038857Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-07T06:34:17.273281+00:00.

source=pdf_text observed=2026-08-06T11:09:42.676419Z digest=sha256:b794073d8eceaa619d5556401733109143bec9c70e7f222dc468793db45bf92a

Observation 96cce433-35b2-40be-bedd-9ec7f5e8578e · outbound

This paper cites Current understanding of hypoxia in glioblastoma multiforme and its response to immunotherapy.

Efficient inference of dynamic gene regulatory networks using discrete penalty Current understanding of hypoxia in glioblastoma multiforme and its response to immunotherapy

Reference 62

Resolution
verified fuzzy
raw_fallback, observed 2026-08-06T11:09:44.025187Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-07T06:34:17.273281+00:00.

source=pdf_text observed=2026-08-06T11:09:42.680714Z digest=sha256:35b91b6921ce51f671de2f331edfac35892546c7b79a75febf5124492eab5040

Observation b463c158-0dd0-44a5-ab7f-f82c37ab7761 · outbound

This paper cites Integrative spatial analysis reveals a multi-layered organization of glioblastoma.

Efficient inference of dynamic gene regulatory networks using discrete penalty Integrative spatial analysis reveals a multi-layered organization of glioblastoma

Reference 63

Resolution
verified fuzzy
raw_fallback, observed 2026-08-06T11:09:44.010195Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-07T06:34:17.273281+00:00.

source=pdf_text observed=2026-08-06T11:09:42.684951Z digest=sha256:eb180ca747f2979ebfe23ec480d352a44fb6298c1abf6fe7cd7fd8c0b20f4fab

Observation 443e49ec-5938-44dd-9e8e-d36aabf0170d · outbound

This paper cites The molecular signatures database hallmark gene set collection.

Efficient inference of dynamic gene regulatory networks using discrete penalty The molecular signatures database hallmark gene set collection

Reference 64

Resolution
verified fuzzy
raw_fallback, observed 2026-08-06T11:09:43.995406Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-07T06:34:17.273281+00:00.

source=pdf_text observed=2026-08-06T11:09:42.689049Z digest=sha256:d0f1153599448a92dbf3383b1eac241fab8519af408de1434b2d75f67a0c1d56

Observation b81cfb1c-0082-4310-8210-359d45b149fe · outbound

This paper cites Pathway centric analysis for single-cell RNA-seq and spatial transcriptomics data with GSDensity.

Efficient inference of dynamic gene regulatory networks using discrete penalty Pathway centric analysis for single-cell RNA-seq and spatial transcriptomics data with GSDensity

Reference 65

Resolution
verified fuzzy
raw_fallback, observed 2026-08-06T11:09:43.981022Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-07T06:34:17.273281+00:00.

source=pdf_text observed=2026-08-06T11:09:42.693582Z digest=sha256:d1520b52ba28520bbcbaef735df323648814cf20b3c9efdc4ed63d4640ea5c0b

Observation de3b33f3-b340-4424-85f0-af13c67135ed · outbound

This paper cites Epithelial-mesenchymal transition in glioblastoma progression.

Efficient inference of dynamic gene regulatory networks using discrete penalty Epithelial-mesenchymal transition in glioblastoma progression

Reference 66

Resolution
verified fuzzy
raw_fallback, observed 2026-08-06T11:09:43.966809Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-07T06:34:17.273281+00:00.

source=pdf_text observed=2026-08-06T11:09:42.698165Z digest=sha256:571f1601317bb1227c39fe8e7cac6c5c517939011b3e8784c45cd127dc0a9c14

Observation 536c9d93-693b-4a39-92e4-8a3763020a26 · outbound

This paper cites Adapt to persist: Glioblas- toma microenvironment and epigenetic regulation on cell plasticity.

Efficient inference of dynamic gene regulatory networks using discrete penalty Adapt to persist: Glioblas- toma microenvironment and epigenetic regulation on cell plasticity

Reference 67

Resolution
verified fuzzy
raw_fallback, observed 2026-08-06T11:09:43.951850Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-07T06:34:17.273281+00:00.

source=pdf_text observed=2026-08-06T11:09:42.702960Z digest=sha256:f5416d96dfedc461dea7536b70b98dd7af0bd6468a57d7ce9462c594cf97b876

Observation edc475e2-b6dd-4ee7-a04e-98aaf31af7ec · outbound

This paper cites The role of hypoxia in glioblastoma invasion.

Efficient inference of dynamic gene regulatory networks using discrete penalty The role of hypoxia in glioblastoma invasion

Reference 68

Resolution
verified fuzzy
raw_fallback, observed 2026-08-06T11:09:43.937263Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-07T06:34:17.273281+00:00.

source=pdf_text observed=2026-08-06T11:09:42.707305Z digest=sha256:fe8bdc3b967289deeb7139344c22d585515e9de30ca8737b10d51c386d2485e8

Observation f72f173a-2a26-4b60-ab11-294f06f9b04c · outbound

This paper cites Cancer genetics and genomics of human FOX family genes.

Efficient inference of dynamic gene regulatory networks using discrete penalty Cancer genetics and genomics of human FOX family genes

Reference 69

Resolution
verified fuzzy
raw_fallback, observed 2026-08-06T11:09:43.922861Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-07T06:34:17.273281+00:00.

source=pdf_text observed=2026-08-06T11:09:42.711406Z digest=sha256:5824abce2cb24f6fe30741ac242d01e1f3ab03287355ba7ee82fee3d47f4d606

Observation 1fecdf0d-9a12-4403-9105-35e8344060ba · outbound

This paper cites Har- monized single-cell landscape, intercellular crosstalk and tumor architecture of glioblastoma.

Efficient inference of dynamic gene regulatory networks using discrete penalty Har- monized single-cell landscape, intercellular crosstalk and tumor architecture of glioblastoma

Reference 70

Resolution
verified fuzzy
raw_fallback, observed 2026-08-06T11:09:43.908481Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-07T06:34:17.273281+00:00.

source=pdf_text observed=2026-08-06T11:09:42.715802Z digest=sha256:1f933fc06a6a2d7c162f84df201fbf31fd5abcba0a07d032188b516ee6f40f6d

Observation a1f87c43-43c8-479d-9570-9f6aa473dc92 · outbound

This paper cites Hypoxia coordinates the spatial landscape of myeloid cells within glioblastoma to affect survival.

Efficient inference of dynamic gene regulatory networks using discrete penalty Hypoxia coordinates the spatial landscape of myeloid cells within glioblastoma to affect survival

Reference 71

Resolution
verified fuzzy
raw_fallback, observed 2026-08-06T11:09:43.894943Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-07T06:34:17.273281+00:00.

source=pdf_text observed=2026-08-06T11:09:42.720417Z digest=sha256:d00baae4109d2ba3514e1f56ebe7745084023998348a6ddf90e6cd22e74f0eab

Observation 70316cfd-2c3d-4262-b749-6d8096a7a009 · outbound

This paper cites Multiomics analyses reveal DARS1-AS1/YBX1–controlled posttranscriptional circuits promoting glioblastoma tumori- genesis/radioresistance.

Efficient inference of dynamic gene regulatory networks using discrete penalty Multiomics analyses reveal DARS1-AS1/YBX1–controlled posttranscriptional circuits promoting glioblastoma tumori- genesis/radioresistance

Reference 72

Resolution
verified fuzzy
raw_fallback, observed 2026-08-06T11:09:43.880676Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-07T06:34:17.273281+00:00.

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Observation d6671194-e42b-4fef-98df-49683db3275d · outbound

This paper cites Spatially resolved multi-omics deciphers bidirectional tumor-host interdependence in glioblastoma.

Efficient inference of dynamic gene regulatory networks using discrete penalty Spatially resolved multi-omics deciphers bidirectional tumor-host interdependence in glioblastoma

Reference 73

Resolution
verified fuzzy
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Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-07T06:34:17.273281+00:00.

source=pdf_text observed=2026-08-06T11:09:42.729190Z digest=sha256:b859e80dbe31e26e7d01695fbd0cdaa618193d39593368c5290245d3f64872a4

Observation 8ce15456-520e-4c63-b6ff-d754454212a0 · outbound

This paper cites Chromatin remodeler HELLS maintains glioma stem cells through E2F3 and MYC.

Efficient inference of dynamic gene regulatory networks using discrete penalty Chromatin remodeler HELLS maintains glioma stem cells through E2F3 and MYC

Reference 74

Resolution
verified fuzzy
raw_fallback, observed 2026-08-06T11:09:43.848842Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-07T06:34:17.273281+00:00.

source=pdf_text observed=2026-08-06T11:09:42.733660Z digest=sha256:b6e6081183fb5f565382eb089f3952a89d7d6027072ccfa6b24dd6958a2a5c14

Observation 01831a64-1541-474d-ba16-7f2907181b20 · outbound

This paper cites Glioblastoma stem-like cells, metabolic strategy to kill a challenging target.

Efficient inference of dynamic gene regulatory networks using discrete penalty Glioblastoma stem-like cells, metabolic strategy to kill a challenging target

Reference 75

Resolution
verified fuzzy
raw_fallback, observed 2026-08-06T11:09:43.833001Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-07T06:34:17.273281+00:00.

source=pdf_text observed=2026-08-06T11:09:42.737709Z digest=sha256:940cc2f22a063622194650719b07f3e00a5ac72a5efa20c92e541d2a7f1db8d1

Observation 17e16397-9f6b-4fa5-a9a9-a10c51a45992 · outbound

This paper cites Tumor cell plasticity, heterogene- ity, and resistance in crucial microenvironmental niches in glioma.

Efficient inference of dynamic gene regulatory networks using discrete penalty Tumor cell plasticity, heterogene- ity, and resistance in crucial microenvironmental niches in glioma

Reference 76

Resolution
verified fuzzy
raw_fallback, observed 2026-08-06T11:09:43.818391Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-07T06:34:17.273281+00:00.

source=pdf_text observed=2026-08-06T11:09:42.742844Z digest=sha256:6a461e22c88b8f2d32498bfb041adbb05209e7467bfafd620f64860c8239ec34

Observation e19791f0-2c6b-40ef-8303-e54e73d33227 · outbound

This paper cites Mechanism of notch signaling pathway in malignant progression of glioblastoma and targeted therapy.

Efficient inference of dynamic gene regulatory networks using discrete penalty Mechanism of notch signaling pathway in malignant progression of glioblastoma and targeted therapy

Reference 77

Resolution
verified fuzzy
raw_fallback, observed 2026-08-06T11:09:43.803158Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-07T06:34:17.273281+00:00.

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Observation 95a73613-5508-4b57-9b64-8852daaad309 · outbound

This paper cites Identification of key genes involved in the recurrence of glioblastoma multiforme using weighted gene co-expression network analysis and differential expression analysis.

Efficient inference of dynamic gene regulatory networks using discrete penalty Identification of key genes involved in the recurrence of glioblastoma multiforme using weighted gene co-expression network analysis and differential expression analysis

Reference 78

Resolution
verified fuzzy
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Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-07T06:34:17.273281+00:00.

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Observation 585eb739-bb35-4e08-92d8-b6d674b75fbc · outbound

This paper cites Transcription factor EHF drives cholangio- carcinoma development through transcriptional activation of glioma-associated oncogene homolog 1 and chemokine CCL2.

Efficient inference of dynamic gene regulatory networks using discrete penalty Transcription factor EHF drives cholangio- carcinoma development through transcriptional activation of glioma-associated oncogene homolog 1 and chemokine CCL2

Reference 79

Resolution
verified fuzzy
raw_fallback, observed 2026-08-06T11:09:43.767578Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-07T06:34:17.273281+00:00.

source=pdf_text observed=2026-08-06T11:09:42.758212Z digest=sha256:c41d86024e6dd05445c26e6dbf6d097260fc92e31b204b43edeebc0b8bbdd08a

Observation c6a04bf1-87da-4037-8fc1-08ae9e137ee3 · outbound

This paper cites Vascular regulation of glioma stem-like cells: a balancing act.

Efficient inference of dynamic gene regulatory networks using discrete penalty Vascular regulation of glioma stem-like cells: a balancing act

Reference 80

Resolution
verified fuzzy
raw_fallback, observed 2026-08-06T11:09:43.744693Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-07T06:34:17.273281+00:00.

source=pdf_text observed=2026-08-06T11:09:42.763611Z digest=sha256:360bdc1910bbb103f4fec7d5f10a5a4133519b89e0a846fe2fe3395d495e9f90

Observation 06000c8e-1eb3-4c87-a469-1c9b8377d01b · outbound

This paper cites Tumor cell plasticity, heterogeneity, and resistance in crucial microenvironments of glioblastoma.

Efficient inference of dynamic gene regulatory networks using discrete penalty Tumor cell plasticity, heterogeneity, and resistance in crucial microenvironments of glioblastoma

Reference 81

Resolution
verified exact
doi, observed 2026-08-06T11:09:43.203260Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-07T06:34:17.273281+00:00.

source=pdf_text observed=2026-08-06T11:09:42.768664Z digest=sha256:5f5e96a4e5452371d0bfdfb1c4c9c4ba2fa9560406f6824af9d54764171115bc

Observation dd9fdf0a-cb39-4088-bec1-714102c46f67 · outbound

This paper cites Computational modelling of perivascular- niche dynamics for the optimization of glioblastoma treatment schedules.

Efficient inference of dynamic gene regulatory networks using discrete penalty Computational modelling of perivascular- niche dynamics for the optimization of glioblastoma treatment schedules

Reference 82

Resolution
verified exact
doi, observed 2026-08-06T11:09:43.183626Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-07T06:34:17.273281+00:00.

source=pdf_text observed=2026-08-06T11:09:42.773690Z digest=sha256:07e718bd137985d2fccab3c812987c8f80657554fd0c32940398a374d65473a2

Observation 13f0c8d8-3ae8-4462-aaa7-67d60cc0e36a · outbound

This paper cites Joint inference of gene regulatory networks from multiple single-cell RNA-seq datasets.

Efficient inference of dynamic gene regulatory networks using discrete penalty Joint inference of gene regulatory networks from multiple single-cell RNA-seq datasets

Reference 83

Resolution
verified exact
doi, observed 2026-08-06T11:09:43.166838Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-07T06:34:17.273281+00:00.

source=pdf_text observed=2026-08-06T11:09:42.778876Z digest=sha256:b56443993cbd0fb9d89b64285fca0f533928c5eebb0f8763e17a9b8b254ea268

Observation c310e660-f8fa-4dbe-93f9-fb9146f9bc0c · outbound

This paper cites Adaptive penalization improves gene regulatory network inference from single-cell RNA-seq data.

Efficient inference of dynamic gene regulatory networks using discrete penalty Adaptive penalization improves gene regulatory network inference from single-cell RNA-seq data

Reference 84

Resolution
malformed identifier
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Source-reported events for the cited work

Unavailable: canonical work link unavailable.

source=pdf_text observed=2026-08-06T11:09:42.783996Z digest=sha256:1272b893a88e527c98b81fb83ca3294e7a85b4c5156f3901541844416715c007

Observation d87fe06c-1508-4a00-9d4a-44b9739cd5a2 · outbound

This paper cites Challenges and advances in gene regulatory network infer- ence from single-cell data.

Efficient inference of dynamic gene regulatory networks using discrete penalty Challenges and advances in gene regulatory network infer- ence from single-cell data

Reference 85

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metadata mismatch
raw_fallback, observed 2026-08-06T11:09:43.693731Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-07T06:34:17.273281+00:00.

source=pdf_text observed=2026-08-06T11:09:42.794488Z digest=sha256:9884bb6f108d57751b1be224d3f5cbab39276be962108ba84a6f840de7bccb1a

Observation 8c86496b-6455-4794-87bc-8d826b1f5381 · outbound

This paper cites Single-cell multi-omics reveals regulatory programs in glioblastoma.

Efficient inference of dynamic gene regulatory networks using discrete penalty Single-cell multi-omics reveals regulatory programs in glioblastoma

Reference 86

Resolution
verified exact
doi, observed 2026-08-06T11:09:43.135123Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-07T06:34:17.273281+00:00.

source=pdf_text observed=2026-08-06T11:09:42.799963Z digest=sha256:5d8c1c63acc82a6998cd5f8e3c37c54fb59e2d29fbdfdefb97e7ddd2fb55c3e0

Observation 4cd0919e-3994-402e-b6a8-24f84f8a568f · outbound

This paper cites Deep learning for gene regulatory network inference from single-cell data.

Efficient inference of dynamic gene regulatory networks using discrete penalty Deep learning for gene regulatory network inference from single-cell data

Reference 87

Resolution
verified exact
doi, observed 2026-08-06T11:09:43.116213Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-07T06:34:17.273281+00:00.

source=pdf_text observed=2026-08-06T11:09:42.805153Z digest=sha256:20d992e448f1b100a5616f194594a528d126147a3c0070b234ee2c95b7cce723

Observation b42d9dcb-3f3a-401e-8966-d62c1d8a101d · outbound

This paper cites BACH1 as a potential target for immunotherapy in glioblastomas.

Efficient inference of dynamic gene regulatory networks using discrete penalty BACH1 as a potential target for immunotherapy in glioblastomas

Reference 88

Resolution
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Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-07T06:34:17.273281+00:00.

source=pdf_text observed=2026-08-06T11:09:42.810410Z digest=sha256:1b5bf6f3d37bacf72f4b1e99f9cc4e89eb9212aefe2033d699b71f45e7f57737

Observation dd9cb5ca-a645-4178-a1f0-57b4882e059d · outbound

This paper cites BACH1 promotes temozolomide resistance in glioblastoma.

Efficient inference of dynamic gene regulatory networks using discrete penalty BACH1 promotes temozolomide resistance in glioblastoma

Reference 90

Resolution
verified exact
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Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-07T06:34:17.273281+00:00.

source=pdf_text observed=2026-08-06T11:09:42.821379Z digest=sha256:6423f8c2268facf72140930200bcf79f73d1533ea0f2e1384e63d70b77f32d74

Observation 4dbdadca-3c97-410e-aa91-56d9c1783682 · outbound

This paper cites Heterogeneity of glioblastoma stem cells in the context of the tumor microenvironment.

Efficient inference of dynamic gene regulatory networks using discrete penalty Heterogeneity of glioblastoma stem cells in the context of the tumor microenvironment

Reference 91

Resolution
unresolved
no resolver link, observed 2026-08-06T11:09:42.826877Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

source=pdf_text observed=2026-08-06T11:09:42.826877Z digest=sha256:8e80035b315aac70a42efb01b8856f4f430aac899d9707026bc3a1fdc1c57bfa

Observation 3e6c5c85-4c50-42bf-b444-8e78e4faba07 · outbound

This paper cites Glioma Stem Cell Niches in Human Glioblastoma Are Periarteriolar.

Efficient inference of dynamic gene regulatory networks using discrete penalty Glioma Stem Cell Niches in Human Glioblastoma Are Periarteriolar

Reference 92

Resolution
verified exact
doi, observed 2026-08-06T11:09:43.066777Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-07T06:34:17.273281+00:00.

source=pdf_text observed=2026-08-06T11:09:42.831854Z digest=sha256:f98d3f4860b977e18ba4ca6a6c40637951071b2d8aff63e5e090da9425eb77f9

Observation ea04594d-164e-43cf-b5b3-758918e14d17 · outbound

This paper cites Glioblastoma: Microenvironment and Niche Concept.

Efficient inference of dynamic gene regulatory networks using discrete penalty Glioblastoma: Microenvironment and Niche Concept

Reference 93

Resolution
verified exact
raw_fallback, observed 2026-08-06T11:09:43.449553Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-07T06:34:17.273281+00:00.

source=pdf_text observed=2026-08-06T11:09:42.837125Z digest=sha256:a1c76d9ef1bae571a9393f7ba09cc0f3b00434d7f7094f9b3afee716e25a897f

Observation 344c642f-0b98-4b5a-9450-aa5ededa40eb · outbound

This paper cites Targeting the Glioblastoma Perivascular Stem Cell Niche.

Efficient inference of dynamic gene regulatory networks using discrete penalty Targeting the Glioblastoma Perivascular Stem Cell Niche

Reference 94

Resolution
verified exact
doi, observed 2026-08-06T11:09:43.043303Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-07T06:34:17.273281+00:00.

source=pdf_text observed=2026-08-06T11:09:42.842539Z digest=sha256:aa39a2fb6ed3ac06c7a46f1f96153c96479b21f473806e53b35501462b63805b

Observation 0b5c2121-961a-4208-836c-66c47a91569e · outbound

This paper cites Glioblastoma: Defining Tumor Niches.

Efficient inference of dynamic gene regulatory networks using discrete penalty Glioblastoma: Defining Tumor Niches

Reference 95

Resolution
verified exact
doi, observed 2026-08-06T11:09:43.025722Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-07T06:34:17.273281+00:00.

source=pdf_text observed=2026-08-06T11:09:42.847771Z digest=sha256:8c15f43ecbc421985aba314bba0ed0c5ed55a22a3da2e15db73dd36ccf23e22e

Observation 1a9112bc-adce-4a1a-87f9-c502140f9888 · outbound

This paper cites Tumor microenvironment in glioblastoma: Current and emerging concepts.

Efficient inference of dynamic gene regulatory networks using discrete penalty Tumor microenvironment in glioblastoma: Current and emerging concepts

Reference 96

Resolution
metadata mismatch
raw_fallback, observed 2026-08-06T11:09:43.351373Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-07T06:34:17.273281+00:00.

source=pdf_text observed=2026-08-06T11:09:42.853161Z digest=sha256:b8d00f83ce7a5a94613acbc9ff7b519d881fb22accbfbfa1b551ccbddaeee54e

Observation 651ac548-71c4-41bd-b7dd-32b71044bca1 · outbound

This paper cites Covariate-adjusted construction of gene regulatory networks using generalized linear models.

Efficient inference of dynamic gene regulatory networks using discrete penalty Covariate-adjusted construction of gene regulatory networks using generalized linear models

Reference 97

Resolution
verified exact
doi, observed 2026-08-06T11:09:43.008154Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-07T06:34:17.273281+00:00.

source=pdf_text observed=2026-08-06T11:09:42.858085Z digest=sha256:da2b58783727b0bce17bc805e87b5be25ec2498d9432a85048fb66df944964dd

Observation 4b2f7ee5-f4c3-4c36-9b2a-13894fe51666 · outbound

This paper cites Data integration for inferring context-specific gene regulatory networks.

Efficient inference of dynamic gene regulatory networks using discrete penalty Data integration for inferring context-specific gene regulatory networks

Reference 98

Resolution
verified fuzzy
raw_fallback, observed 2026-08-06T11:09:43.728353Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-07T06:34:17.273281+00:00.

source=pdf_text observed=2026-08-06T11:09:42.863054Z digest=sha256:8a7b4df76205c4d4bd8f06a1faa9cb15beb937d332e784ce39d5ebace6404aee

Observation 45249ccf-19f5-4b89-933d-720741df7f0d · outbound

This paper cites Leveraging chromatin accessibility for transcriptional regulatory network inference in T Helper 17 Cells.

Efficient inference of dynamic gene regulatory networks using discrete penalty Leveraging chromatin accessibility for transcriptional regulatory network inference in T Helper 17 Cells

Reference 99

Resolution
verified exact
doi, observed 2026-08-06T11:09:42.990284Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-07T06:34:17.273281+00:00.

source=pdf_text observed=2026-08-06T11:09:42.868232Z digest=sha256:a3af2ada1813a068f45eddbaf58f44544362f9c5253dec5ebf87363b6f8bd04f

Observation 2c09d414-359d-4229-af08-78432fda76aa · outbound

This paper cites Dissecting cell identity via network-based in silico perturbation of single-cell transcriptomes.

Efficient inference of dynamic gene regulatory networks using discrete penalty Dissecting cell identity via network-based in silico perturbation of single-cell transcriptomes

Reference 100

Resolution
malformed identifier
no resolver link, observed 2026-08-06T11:09:42.874756Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

source=pdf_text observed=2026-08-06T11:09:42.874756Z digest=sha256:045fa0eacf7f408f7d9c2d32a4b66666bb30855f29b92806e39112895d9980bc

Observation 2e699c8b-b1a8-4051-bf62-91c12d056d92 · outbound

This paper cites SCENIC+: single-cell multiomic inference of enhancers and gene regulatory networks.

Efficient inference of dynamic gene regulatory networks using discrete penalty SCENIC+: single-cell multiomic inference of enhancers and gene regulatory networks

Reference 101

Resolution
verified fuzzy
raw_fallback, observed 2026-08-06T11:09:43.710681Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-07T06:34:17.273281+00:00.

source=pdf_text observed=2026-08-06T11:09:42.879911Z digest=sha256:4f07c23763ad68400ece3f77b8409958c53fcee61aa4953f34659d9fb6b1b1c5

Pith citing papers

Observation 887b3c2a-d877-41f5-860c-81855ee5fdf1 · inbound

Coordinate Optimality Reformulation for Mixed-Integer Convex Programs with Indicators cites this paper.

Coordinate Optimality Reformulation for Mixed-Integer Convex Programs with Indicators Efficient inference of dynamic gene regulatory networks using discrete penalty

Reference 58

Resolution
verified exact
local_arxiv, observed 2026-08-06T00:23:47.894340Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-07T06:34:17.273281+00:00.

source=pdf_text observed=2026-08-06T00:23:46.224409Z digest=sha256:45776221b8dcbf8edee0b0de3df4ae6f3b6ae401bef8f8b026302058044284e8