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arxiv: 1108.3436 · v1 · pith:TB2WI6QYnew · submitted 2011-08-17 · 💻 cs.LO · cs.CE

Modelling of Genetic Regulatory Mechanisms with GReg

classification 💻 cs.LO cs.CE
keywords checkingmodelbehaviourslanguageproposesimulationsystemsystems
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Most available tools propose simulation frameworks to study models of biological systems, but simulation only explores a few of the most probable behaviours of the system. On the contrary, techniques such as model checking, coming from IT-systems analysis, explore all the possible behaviours of the modelled systems, thus helping to identify emergent properties. A main drawback from most model checking tools in the life sciences domain is that they take as input a language designed for computer scientists, that is not easily understood by non-expert users. We propose in this article an approach based on DSL. It provides a comprehensible language to describe the system while allowing the use of complex and powerful underlying model checking techniques.

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