Paper Citation Record · LEDGER

Measuring Scientific Capabilities of Language Models with a Systems Biology Dry Lab

As of 19 August 2026, this Paper Citation Record lists 14 of 14 outbound references and 3 inbound Pith citation observations for arXiv:2507.02083.

A citation records a reference. It does not transfer a finding from one paper to another.

pith.paper-citation-record.v1
2507.02083 v2

Coverage vector

measured 14 of 14 reference resolution

Typed states for the displayed outbound observations.

Source: paper_references, paper_reference_links, observed 2026-08-06T20:44:36.043684Z

measured 17 of 17 standing notices

One-hop event checks from named stored sources.

Source: scholarly_work_events, retraction_status_cache, observed 2026-08-18T06:34:40.430872+00:00

measured 3 of 3 inbound itemization

Pith citing papers itemized under the disclosed page cap.

Source: paper_references, paper_reference_links, observed 2026-08-16T00:08:35.048590Z

measured 0 of 1 external citation measurements

A source-named dated measurement, never combined with another source.

Source: arxiv_reference, observed 2026-05-18T22:46:53.202639Z

Reference resolution

14 of 14 outbound references displayed

verified exact0
verified fuzzy9
unresolved4
parse uncertain1
malformed identifier0
metadata mismatch0

External citation measurements

No source-named external measurement is stored.

Outbound references

Observation 52e6feda-363b-48ef-91bb-cc0843ae3d93 · outbound

This paper cites You can also choose to perturb the system and see how the system responds.

Measuring Scientific Capabilities of Language Models with a Systems Biology Dry Lab You can also choose to perturb the system and see how the system responds

Reference 1

Resolution: verified fuzzy; raw_fallback, observed 2026-08-06T20:44:38.389429Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-18T06:34:40.430872+00:00.

Observation de0944db-1116-4133-bf66-ce22983dc8df · outbound

This paper cites You can use several s c i e n t i f i c com pu ti ng li br ar ie s and c u s t o m i z e d f un ct io ns.

Measuring Scientific Capabilities of Language Models with a Systems Biology Dry Lab You can use several s c i e n t i f i c com pu ti ng li br ar ie s and c u s t o m i z e d f un ct io ns

Reference 2

Resolution: verified fuzzy; raw_fallback, observed 2026-08-06T20:44:38.118121Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-18T06:34:40.430872+00:00.

Observation d5fcf02e-8ccf-4961-bf27-438c2dcc73b3 · outbound

This paper cites r ea ct io n1.

Measuring Scientific Capabilities of Language Models with a Systems Biology Dry Lab r ea ct io n1

Reference 3

Resolution: verified fuzzy; raw_fallback, observed 2026-08-06T20:44:37.897217Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-18T06:34:40.430872+00:00.

Observation 0461b384-6221-47f1-9cf1-6b7f5d483713 · outbound

This paper cites an unresolved cited work.

Measuring Scientific Capabilities of Language Models with a Systems Biology Dry Lab Unresolved cited work

Reference 5

Resolution: unresolved; raw_fallback, observed 2026-08-06T20:44:37.763893Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-18T06:34:40.430872+00:00.

Observation 88f5c8c0-68d1-40a7-9dac-abbd668e975b · outbound

This paper cites an unresolved cited work.

Measuring Scientific Capabilities of Language Models with a Systems Biology Dry Lab Unresolved cited work

Reference 6

Resolution: unresolved; raw_fallback, observed 2026-08-06T20:44:37.621553Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-18T06:34:40.430872+00:00.

Observation c7c63f41-7703-4804-8c47-1fbaa1fdb243 · outbound

This paper cites an unresolved cited work.

Measuring Scientific Capabilities of Language Models with a Systems Biology Dry Lab Unresolved cited work

Reference 7

Resolution: parse uncertain; raw_fallback, observed 2026-08-06T20:44:37.444207Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-18T06:34:40.430872+00:00.

Observation 424359f4-5730-4529-bc81-ecbfda1cb286 · outbound

This paper cites an unresolved cited work.

Measuring Scientific Capabilities of Language Models with a Systems Biology Dry Lab Unresolved cited work

Reference 8

Resolution: unresolved; raw_fallback, observed 2026-08-06T20:44:37.249791Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-18T06:34:40.430872+00:00.

Observation a5295a82-013f-4540-9a2a-1dea78b4e034 · outbound

This paper cites We remove optional metadata fields from the SBML entities.

Measuring Scientific Capabilities of Language Models with a Systems Biology Dry Lab We remove optional metadata fields from the SBML entities

Reference 9

Resolution: verified fuzzy; raw_fallback, observed 2026-08-06T20:44:37.089627Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-18T06:34:40.430872+00:00.

Observation 11b64cb9-e34c-4a8b-bac3-ea45a1513950 · outbound

This paper cites We shuffle the order of parameters, reactions, species, and compartments.

Measuring Scientific Capabilities of Language Models with a Systems Biology Dry Lab We shuffle the order of parameters, reactions, species, and compartments

Reference 10

Resolution: verified fuzzy; raw_fallback, observed 2026-08-06T20:44:36.945941Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-18T06:34:40.430872+00:00.

Observation e91e95b5-0115-4da0-b015-ddb45fba8079 · outbound

This paper cites We rename the ids of all components in the model to a unique 4 character alphanumeric identifier.

Measuring Scientific Capabilities of Language Models with a Systems Biology Dry Lab We rename the ids of all components in the model to a unique 4 character alphanumeric identifier

Reference 11

Resolution: verified fuzzy; raw_fallback, observed 2026-08-06T20:44:36.812764Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-18T06:34:40.430872+00:00.

Observation 4f27a886-f4cf-4241-bac2-0f07abfcc82c · outbound

This paper cites This step may fail for some models due to numerical issues or the absence of a steady state.

Measuring Scientific Capabilities of Language Models with a Systems Biology Dry Lab This step may fail for some models due to numerical issues or the absence of a steady state

Reference 12

Resolution: verified fuzzy; raw_fallback, observed 2026-08-06T20:44:36.604370Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-18T06:34:40.430872+00:00.

Observation 51de4dea-c119-4ccc-9d9d-6e7b6c7a890b · outbound

This paper cites We use a fixed step size of t = 0.05 seconds.

Measuring Scientific Capabilities of Language Models with a Systems Biology Dry Lab We use a fixed step size of t = 0.05 seconds

Reference 13

Resolution: verified fuzzy; raw_fallback, observed 2026-08-06T20:44:36.445504Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-18T06:34:40.430872+00:00.

Observation e4439c64-b2f4-4573-bb9b-74089982651f · outbound

This paper cites 1.0" encoding=.

Measuring Scientific Capabilities of Language Models with a Systems Biology Dry Lab 1.0" encoding=

Reference 14

Resolution: verified fuzzy; raw_fallback, observed 2026-08-06T20:44:36.275997Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-18T06:34:40.430872+00:00.

Observation c02c1033-7abe-4c7c-a9da-bcc2610ca36e · outbound

This paper cites BioDiscoveryAgent: An AI Agent for Designing Genetic Perturbation Experiments.

Measuring Scientific Capabilities of Language Models with a Systems Biology Dry Lab BioDiscoveryAgent: An AI Agent for Designing Genetic Perturbation Experiments

Reference 2014

Resolution: unresolved; no resolver link, observed 2026-08-06T20:44:34.656245Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Pith citing papers

Observation 25e34bf0-a558-4a6e-b78a-24ffc3bd7a9e · inbound

Copyright Protection for Large Language Models: A Survey of Methods, Challenges, and Trends cites this paper.

Copyright Protection for Large Language Models: A Survey of Methods, Challenges, and Trends Measuring Scientific Capabilities of Language Models with a Systems Biology Dry Lab

Reference 40

Resolution: verified exact; arxiv_id, observed 2026-05-18T22:46:53.206153Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-18T06:34:40.430872+00:00.

Observation 76b6d03b-4aba-4599-ba16-654b2a166aee · inbound

ChemWorld: Programmable Chemical Worlds for Controlled and Replayable Agent Experimentation cites this paper.

ChemWorld: Programmable Chemical Worlds for Controlled and Replayable Agent Experimentation Measuring Scientific Capabilities of Language Models with a Systems Biology Dry Lab

Reference 18

Resolution: unresolved; no resolver link, observed 2026-08-12T17:21:15.875314Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation f02cdc55-faff-42dd-8150-e83dc36dbf9c · inbound

DiG-bench: Discovery in Games cites this paper.

DiG-bench: Discovery in Games Measuring Scientific Capabilities of Language Models with a Systems Biology Dry Lab

Reference 9

Resolution: unresolved; no resolver link, observed 2026-08-16T00:08:35.048590Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.