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Paper Citation Record · LEDGER

A Large-Scale Benchmark of Cross-Modal Learning for Histology and Gene Expression in Spatial Transcriptomics

As of 20 August 2026, this Paper Citation Record lists 63 of 63 outbound references and 0 inbound Pith citation observations for arXiv:2508.01490.

A citation records a reference. It does not transfer a finding from one paper to another.

pith.paper-citation-record.v1
2508.01490 v2

Coverage vector

measured 63 of 63 reference resolution

Typed states for the displayed outbound observations.

Source: paper_references, paper_reference_links, observed 2026-08-06T05:36:44.790811Z

measured 63 of 63 standing notices

One-hop event checks from named stored sources.

Source: scholarly_work_events, retraction_status_cache, observed 2026-08-20T06:33:59.587034+00:00

measured 0 of 0 inbound itemization

Pith citing papers itemized under the disclosed page cap.

Source: paper_references, paper_reference_links

measured 0 of 1 external citation measurements

A source-named dated measurement, never combined with another source.

Source: cited_works

Reference resolution

63 of 63 outbound references displayed

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External citation measurements

No source-named external measurement is stored.

Outbound references

Observation 8883c63d-1436-4d51-9777-bb4bb21f1e04 · outbound

This paper cites write newline.

A Large-Scale Benchmark of Cross-Modal Learning for Histology and Gene Expression in Spatial Transcriptomics write newline

Reference 1

Resolution
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Source-reported events for the cited work

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source=arxiv_source observed=2026-08-06T05:36:44.268902Z digest=sha256:3dca46301746724ce38f6aadeb9346c14a9066c35a9309649c724aa972b17c36

Observation c86df5f1-d321-407a-9289-99bc26212aaf · outbound

This paper cites Atlas: A novel pathology foundation model by mayo clinic, charit\'e, and aignostics, 2025.

A Large-Scale Benchmark of Cross-Modal Learning for Histology and Gene Expression in Spatial Transcriptomics Atlas: A novel pathology foundation model by mayo clinic, charit\'e, and aignostics, 2025

Reference 2

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Observation f08e93f5-00cd-4a3c-adee-1f5fe71454a9 · outbound

This paper cites Song, Luca Weishaupt, Ahrong Kim, Guillaume Jaume, Drew F.

A Large-Scale Benchmark of Cross-Modal Learning for Histology and Gene Expression in Spatial Transcriptomics Song, Luca Weishaupt, Ahrong Kim, Guillaume Jaume, Drew F

Reference 3

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verified fuzzy
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Source-reported events for the cited work

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Observation 835cadb6-501c-44ed-95b4-6ef2dc510b89 · outbound

This paper cites Super-resolved spatial transcriptomics by deep data fusion.

A Large-Scale Benchmark of Cross-Modal Learning for Histology and Gene Expression in Spatial Transcriptomics Super-resolved spatial transcriptomics by deep data fusion

Reference 4

Resolution
verified fuzzy
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Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-20T06:33:59.587034+00:00.

source=arxiv_source observed=2026-08-06T05:36:44.293924Z digest=sha256:f0ec0a86d7c7ce871efb2fe0e8245f1cb43381889ad6e629b3967171dff2a1f7

Observation 373eb5d3-e885-4b0d-8063-02e80f9fecc1 · outbound

This paper cites Schoenfeld, and Chad Vanderbilt.

A Large-Scale Benchmark of Cross-Modal Learning for Histology and Gene Expression in Spatial Transcriptomics Schoenfeld, and Chad Vanderbilt

Reference 5

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Source-reported events for the cited work

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source=arxiv_source observed=2026-08-06T05:36:44.300518Z digest=sha256:2ef65dcf5ec0b48171fb840921f3f995d0723d42e701cc1ba010f4446f4e7fd1

Observation 98361def-b61c-4c8a-aa5f-ebba7d774d03 · outbound

This paper cites Emerging properties in self-supervised vision transformers.

A Large-Scale Benchmark of Cross-Modal Learning for Histology and Gene Expression in Spatial Transcriptomics Emerging properties in self-supervised vision transformers

Reference 6

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Source-reported events for the cited work

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source=arxiv_source observed=2026-08-06T05:36:44.307997Z digest=sha256:c1e7f8fb6e7724eb4163ebfb0bbadc397dfa7faad1426b3f18819857445adab5

Observation ade58408-0ca1-4569-9099-863d70eecb08 · outbound

This paper cites Towards a general-purpose foundation model for computational pathology.

A Large-Scale Benchmark of Cross-Modal Learning for Histology and Gene Expression in Spatial Transcriptomics Towards a general-purpose foundation model for computational pathology

Reference 7

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Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-20T06:33:59.587034+00:00.

source=arxiv_source observed=2026-08-06T05:36:44.316146Z digest=sha256:583244c4894f58302c4aafcddb6e543cbf09c4b59d37be2cf55d796682ee4524

Observation c6118fe4-b249-41f6-8859-89ca07ba3782 · outbound

This paper cites Tran, Yiwei Xiao, Shengyu Li, Vrutant V.

A Large-Scale Benchmark of Cross-Modal Learning for Histology and Gene Expression in Spatial Transcriptomics Tran, Yiwei Xiao, Shengyu Li, Vrutant V

Reference 8

Resolution
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Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-20T06:33:59.587034+00:00.

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Observation dab9ed30-2d17-4ba1-970b-171eaa559d2d · outbound

This paper cites scgpt: toward building a foundation model for single-cell multi-omics using generative ai.

A Large-Scale Benchmark of Cross-Modal Learning for Histology and Gene Expression in Spatial Transcriptomics scgpt: toward building a foundation model for single-cell multi-omics using generative ai

Reference 9

Resolution
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Source-reported events for the cited work

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source=arxiv_source observed=2026-08-06T05:36:44.335024Z digest=sha256:6cc8900ad385ceceec4e82f0d62fcd4b99f7925a44c06f97e94db3493f069371

Observation 355e35e8-06de-4abf-b8ff-9ad2993ac5fe · outbound

This paper cites Contrastive vision-language pre-training with limited resources.

A Large-Scale Benchmark of Cross-Modal Learning for Histology and Gene Expression in Spatial Transcriptomics Contrastive vision-language pre-training with limited resources

Reference 10

Resolution
verified fuzzy
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Source-reported events for the cited work

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source=arxiv_source observed=2026-08-06T05:36:44.341185Z digest=sha256:e48dfc9fe50f2b604052bb84fadf9eb7c18b2274fd0660896cb241af37c71f15

Observation c1c06886-3e69-4fd1-b56a-1017a27e0519 · outbound

This paper cites Geneformer: Learned gene compression using transformer-based context modeling.

A Large-Scale Benchmark of Cross-Modal Learning for Histology and Gene Expression in Spatial Transcriptomics Geneformer: Learned gene compression using transformer-based context modeling

Reference 11

Resolution
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Source-reported events for the cited work

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source=arxiv_source observed=2026-08-06T05:36:44.349639Z digest=sha256:b220bb44141a22623c778bdc04c084e4e21158384dff1e813339a75c7bd0b7f2

Observation 79fcc4d1-e299-4878-90e4-c7aff154a3b4 · outbound

This paper cites Navia, Nicolo Fusi, Srivatsan Raghavan, Peter S.

A Large-Scale Benchmark of Cross-Modal Learning for Histology and Gene Expression in Spatial Transcriptomics Navia, Nicolo Fusi, Srivatsan Raghavan, Peter S

Reference 12

Resolution
verified fuzzy
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Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-20T06:33:59.587034+00:00.

source=arxiv_source observed=2026-08-06T05:36:44.355720Z digest=sha256:bbbf42954a0470f8381e8be96b72ab0b1e1822bc0d8de86d6766ade49b94cf39

Observation 76b49cbd-f726-4b1e-8943-dd22083913f5 · outbound

This paper cites Multimodal Whole Slide Foundation Model for Pathology.

A Large-Scale Benchmark of Cross-Modal Learning for Histology and Gene Expression in Spatial Transcriptomics Multimodal Whole Slide Foundation Model for Pathology

Reference 13

Resolution
unresolved
no resolver link, observed 2026-08-06T05:36:44.362947Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

source=arxiv_source observed=2026-08-06T05:36:44.362947Z digest=sha256:422143ecb755b0a60aaab08ae7e48c14b27edcd740ba21272a07a1ec1f92f7d2

Observation 4f86d1e8-aeb3-4353-bdb5-44934f51eb84 · outbound

This paper cites Distilling foundation models for robust and efficient models in digital pathology, 2025.

A Large-Scale Benchmark of Cross-Modal Learning for Histology and Gene Expression in Spatial Transcriptomics Distilling foundation models for robust and efficient models in digital pathology, 2025

Reference 14

Resolution
verified fuzzy
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Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-20T06:33:59.587034+00:00.

source=arxiv_source observed=2026-08-06T05:36:44.376424Z digest=sha256:39f4a8de04ca1b4f6b1b76aff7618ddb74dd60328fe046c62ca15287324f4d6d

Observation 1d49d71f-d141-4545-a122-8807f4373c8e · outbound

This paper cites Large-scale foundation model on single-cell transcriptomics.

A Large-Scale Benchmark of Cross-Modal Learning for Histology and Gene Expression in Spatial Transcriptomics Large-scale foundation model on single-cell transcriptomics

Reference 15

Resolution
verified fuzzy
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Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-20T06:33:59.587034+00:00.

source=arxiv_source observed=2026-08-06T05:36:44.383956Z digest=sha256:3a54f56f83c11c55dd05bf9cad6f436e52eaf51afae6aad599b7f9fbe4c4256e

Observation 82e52781-712a-42d7-a6e9-ed53ec66861d · outbound

This paper cites Integrating spatial gene expression and breast tumour morphology via deep learning.

A Large-Scale Benchmark of Cross-Modal Learning for Histology and Gene Expression in Spatial Transcriptomics Integrating spatial gene expression and breast tumour morphology via deep learning

Reference 16

Resolution
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Source-reported events for the cited work

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source=arxiv_source observed=2026-08-06T05:36:44.392080Z digest=sha256:19f7d1e73e186feb6d6c094f159c98babc89260d14cc34f21ea779f19b78018b

Observation e1832eda-3308-4c7e-b08f-d624b393638a · outbound

This paper cites Hu, Yelong Shen, Phillip Wallis, Zeyuan Allen-Zhu, Yuanzhi Li, Shean Wang, Lu Wang, and Weizhu Chen.

A Large-Scale Benchmark of Cross-Modal Learning for Histology and Gene Expression in Spatial Transcriptomics Hu, Yelong Shen, Phillip Wallis, Zeyuan Allen-Zhu, Yuanzhi Li, Shean Wang, Lu Wang, and Weizhu Chen

Reference 17

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Source-reported events for the cited work

Unavailable: canonical work link unavailable.

source=arxiv_source observed=2026-08-06T05:36:44.406115Z digest=sha256:17beaa958593e582ee94362722f14b4fdb2fd76fca6a98168d7713285ff794e6

Observation 35ca6e0e-d330-4046-9ec5-4e4fb5ad11e0 · outbound

This paper cites Montine, and James Zou.

A Large-Scale Benchmark of Cross-Modal Learning for Histology and Gene Expression in Spatial Transcriptomics Montine, and James Zou

Reference 18

Resolution
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Source-reported events for the cited work

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Observation 6bc787c9-8d10-48b0-9d38-2f843c64a592 · outbound

This paper cites Hyland, Shruthi Bannur, Kenza Bouzid, Daniel C.

A Large-Scale Benchmark of Cross-Modal Learning for Histology and Gene Expression in Spatial Transcriptomics Hyland, Shruthi Bannur, Kenza Bouzid, Daniel C

Reference 19

Resolution
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Source-reported events for the cited work

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source=arxiv_source observed=2026-08-06T05:36:44.418777Z digest=sha256:51b0a2dd94a2772bd02f7a8f3479a4e6a3aa259996939e941511e25d5685d996

Observation b0494301-10c0-4e8b-b18f-b8d90c3f6430 · outbound

This paper cites Quilt-1M: One Million Image-Text Pairs for Histopathology.

A Large-Scale Benchmark of Cross-Modal Learning for Histology and Gene Expression in Spatial Transcriptomics Quilt-1M: One Million Image-Text Pairs for Histopathology

Reference 20

Resolution
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Source-reported events for the cited work

Unavailable: canonical work link unavailable.

source=arxiv_source observed=2026-08-06T05:36:44.423965Z digest=sha256:c03512ac5f88396e586111b6d2f45850baacc6c48c1002d8b9ee37cbb056d58c

Observation e448e946-6b4b-4716-9adf-7958c6ff9052 · outbound

This paper cites Openclip, 2021.

A Large-Scale Benchmark of Cross-Modal Learning for Histology and Gene Expression in Spatial Transcriptomics Openclip, 2021

Reference 21

Resolution
unresolved
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Source-reported events for the cited work

Unavailable: canonical work link unavailable.

source=arxiv_source observed=2026-08-06T05:36:44.444965Z digest=sha256:ffbdbf395c57eea1552f439e6126f6358f0b0ea8f42ddb70f9d01a5a1815b11f

Observation decec8b0-703c-4032-a157-fc491129b4cf · outbound

This paper cites Hest-1k: A dataset for spatial transcriptomics and histology image analysis.

A Large-Scale Benchmark of Cross-Modal Learning for Histology and Gene Expression in Spatial Transcriptomics Hest-1k: A dataset for spatial transcriptomics and histology image analysis

Reference 22

Resolution
verified fuzzy
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Source-reported events for the cited work

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Observation 948bd05c-89bc-4fe2-8146-dd5185a0e5da · outbound

This paper cites Chen, Drew F.

A Large-Scale Benchmark of Cross-Modal Learning for Histology and Gene Expression in Spatial Transcriptomics Chen, Drew F

Reference 23

Resolution
verified fuzzy
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Source-reported events for the cited work

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source=arxiv_source observed=2026-08-06T05:36:44.459344Z digest=sha256:ed2ae3f8358562cfdd9d5a9ea57b9a0f0f9573255f88839b3adbe76107018e22

Observation 5bf60a15-eeb7-4fda-b5e9-3a9c67bde109 · outbound

This paper cites Modeling dense multimodal interactions between biological pathways and histology for survival prediction, 2024 c.

A Large-Scale Benchmark of Cross-Modal Learning for Histology and Gene Expression in Spatial Transcriptomics Modeling dense multimodal interactions between biological pathways and histology for survival prediction, 2024 c

Reference 24

Resolution
verified fuzzy
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Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-20T06:33:59.587034+00:00.

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Observation fca72e1c-8069-4fcd-a1bb-57dec35e16e8 · outbound

This paper cites Song, Richard J.

A Large-Scale Benchmark of Cross-Modal Learning for Histology and Gene Expression in Spatial Transcriptomics Song, Richard J

Reference 25

Resolution
verified fuzzy
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Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-20T06:33:59.587034+00:00.

source=arxiv_source observed=2026-08-06T05:36:44.470251Z digest=sha256:84e4882a2d5c813b4165d7adb2bf2dac0226c1a545b71b88968cdf82d1516a49

Observation 27d52d13-3c00-403a-8236-263b3f30f025 · outbound

This paper cites o lscher, Tri Q. Nguyen, Jesper Kers, Roman D. B \.

A Large-Scale Benchmark of Cross-Modal Learning for Histology and Gene Expression in Spatial Transcriptomics o lscher, Tri Q. Nguyen, Jesper Kers, Roman D. B \

Reference 26

Resolution
verified fuzzy
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Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-20T06:33:59.587034+00:00.

source=arxiv_source observed=2026-08-06T05:36:44.478074Z digest=sha256:59e92e6979d1e4906eb74a43c960d4359e4ceb5f88c19d261ba07093d7296222

Observation ed64d291-8637-4f6a-afc9-1bda7d485580 · outbound

This paper cites Pathomclip: Connecting tumor histology with spatial gene expression via locally enhanced contrastive learning of pathology and single-cell foundation model.

A Large-Scale Benchmark of Cross-Modal Learning for Histology and Gene Expression in Spatial Transcriptomics Pathomclip: Connecting tumor histology with spatial gene expression via locally enhanced contrastive learning of pathology and single-cell foundation model

Reference 27

Resolution
verified fuzzy
raw_fallback, observed 2026-08-06T05:36:46.038419Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-20T06:33:59.587034+00:00.

source=arxiv_source observed=2026-08-06T05:36:44.482918Z digest=sha256:8abde4f5f24e5fd203e9496230587234d8020411904938be22d40a339c05d3f4

Observation a9b4dc2a-7b53-4e62-ac84-8ea830d3c296 · outbound

This paper cites An integrated tcga pan-cancer clinical data resource to drive high-quality survival outcome analytics.

A Large-Scale Benchmark of Cross-Modal Learning for Histology and Gene Expression in Spatial Transcriptomics An integrated tcga pan-cancer clinical data resource to drive high-quality survival outcome analytics

Reference 28

Resolution
verified fuzzy
raw_fallback, observed 2026-08-06T05:36:46.008843Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-20T06:33:59.587034+00:00.

source=arxiv_source observed=2026-08-06T05:36:44.489460Z digest=sha256:47c5bdc13a6e8bd4ea5ece3c7648850674c3530b2f4a75d42adb19786d0fc4cc

Observation 42bdd5a2-a38c-43a1-b58b-325d3dbc5e20 · outbound

This paper cites Deep generative modeling for single-cell transcriptomics.

A Large-Scale Benchmark of Cross-Modal Learning for Histology and Gene Expression in Spatial Transcriptomics Deep generative modeling for single-cell transcriptomics

Reference 29

Resolution
verified fuzzy
raw_fallback, observed 2026-08-06T05:36:45.971803Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-20T06:33:59.587034+00:00.

source=arxiv_source observed=2026-08-06T05:36:44.504207Z digest=sha256:c8a0c5fc7e032608d245d512668f1ee7f193f01fdc79755f4a08f4e42d10d6de

Observation 17dbd77b-341b-409f-897a-7202cedfb179 · outbound

This paper cites A visual-language foundation model for computational pathology.

A Large-Scale Benchmark of Cross-Modal Learning for Histology and Gene Expression in Spatial Transcriptomics A visual-language foundation model for computational pathology

Reference 30

Resolution
verified fuzzy
raw_fallback, observed 2026-08-06T05:36:45.945232Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-20T06:33:59.587034+00:00.

source=arxiv_source observed=2026-08-06T05:36:44.514318Z digest=sha256:21401876997c0cf7efea8b507cce0ee726e8fe18dff888696836a2ab386e6c71

Observation def5f0a1-a7b8-424d-9296-b4e7c67a5b91 · outbound

This paper cites A multimodal generative ai copilot for human pathology.

A Large-Scale Benchmark of Cross-Modal Learning for Histology and Gene Expression in Spatial Transcriptomics A multimodal generative ai copilot for human pathology

Reference 31

Resolution
verified fuzzy
raw_fallback, observed 2026-08-06T05:36:45.925374Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-20T06:33:59.587034+00:00.

source=arxiv_source observed=2026-08-06T05:36:44.522135Z digest=sha256:9e1ed42603dd9a2ae047f84199e940da224180b543dc48887a1c4864c664b311

Observation 13379a2c-8a83-4280-9844-37a064ab5c08 · outbound

This paper cites Benchmarking atlas-level data integration in single-cell genomics.

A Large-Scale Benchmark of Cross-Modal Learning for Histology and Gene Expression in Spatial Transcriptomics Benchmarking atlas-level data integration in single-cell genomics

Reference 32

Resolution
verified fuzzy
raw_fallback, observed 2026-08-06T05:36:45.906187Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-20T06:33:59.587034+00:00.

source=arxiv_source observed=2026-08-06T05:36:44.529930Z digest=sha256:58210ba60376c9e42320f45b011f770d2fa2c1fa31db0ca69445e8b64484c5c0

Observation 08b46de9-7ab7-43f4-904c-19cc95c78975 · outbound

This paper cites Pathbench: A comprehensive comparison benchmark for pathology foundation models towards precision oncology, 2025.

A Large-Scale Benchmark of Cross-Modal Learning for Histology and Gene Expression in Spatial Transcriptomics Pathbench: A comprehensive comparison benchmark for pathology foundation models towards precision oncology, 2025

Reference 33

Resolution
verified fuzzy
raw_fallback, observed 2026-08-06T05:36:45.880737Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-20T06:33:59.587034+00:00.

source=arxiv_source observed=2026-08-06T05:36:44.534338Z digest=sha256:38d8a2fd50ed9c50f9ace78cd040f508047c9a8fd7189016e7768a990816e189

Observation afc72521-1ec8-4292-90ec-578300f3dbd9 · outbound

This paper cites Yamauchi, Isaac Virshup, Elyas Heidari, Tim Treis, Wouter-Michiel Vierdag, Marcella Toth, Sonja Stockhaus, Rahul B.

A Large-Scale Benchmark of Cross-Modal Learning for Histology and Gene Expression in Spatial Transcriptomics Yamauchi, Isaac Virshup, Elyas Heidari, Tim Treis, Wouter-Michiel Vierdag, Marcella Toth, Sonja Stockhaus, Rahul B

Reference 34

Resolution
verified fuzzy
raw_fallback, observed 2026-08-06T05:36:45.841908Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-20T06:33:59.587034+00:00.

source=arxiv_source observed=2026-08-06T05:36:44.543086Z digest=sha256:7ab9965ace928784fa35bea255b29da4d86d5b5179193d65b4de0bc2dbcc3f86

Observation 8c381126-409f-44d2-be0e-224d4b673c19 · outbound

This paper cites Benchmarking histopathology foundation models in a multi-center dataset for skin cancer subtyping, 2025.

A Large-Scale Benchmark of Cross-Modal Learning for Histology and Gene Expression in Spatial Transcriptomics Benchmarking histopathology foundation models in a multi-center dataset for skin cancer subtyping, 2025

Reference 35

Resolution
verified fuzzy
raw_fallback, observed 2026-08-06T05:36:45.801937Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-20T06:33:59.587034+00:00.

source=arxiv_source observed=2026-08-06T05:36:44.554062Z digest=sha256:929995017f5e439b87bb3235d279843110e343d49c30ab92e961bd1ee0ffbf8d

Observation cfb05ed4-65ea-4923-8782-25c631603013 · outbound

This paper cites Unsupervised deep disentangled representation of single-cell omics.

A Large-Scale Benchmark of Cross-Modal Learning for Histology and Gene Expression in Spatial Transcriptomics Unsupervised deep disentangled representation of single-cell omics

Reference 36

Resolution
verified fuzzy
raw_fallback, observed 2026-08-06T05:36:45.782551Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-20T06:33:59.587034+00:00.

source=arxiv_source observed=2026-08-06T05:36:44.568981Z digest=sha256:1bc76c9daceadc6eadff060d866f2097591094547a20412d6483c642962b122c

Observation f620debc-5cde-49d2-b13e-fad1b85a3446 · outbound

This paper cites DINOv2: Learning Robust Visual Features without Supervision.

A Large-Scale Benchmark of Cross-Modal Learning for Histology and Gene Expression in Spatial Transcriptomics DINOv2: Learning Robust Visual Features without Supervision

Reference 37

Resolution
unresolved
no resolver link, observed 2026-08-06T05:36:44.578753Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

source=arxiv_source observed=2026-08-06T05:36:44.578753Z digest=sha256:083af28518637587694f726c917ff4b9cbe2bf5a513387308ed45047cbff7925

Observation 197a3e7c-3cdd-451a-bdcd-b51f2c593f3a · outbound

This paper cites Spatial components of molecular tissue biology.

A Large-Scale Benchmark of Cross-Modal Learning for Histology and Gene Expression in Spatial Transcriptomics Spatial components of molecular tissue biology

Reference 38

Resolution
verified fuzzy
raw_fallback, observed 2026-08-06T05:36:45.756419Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-20T06:33:59.587034+00:00.

source=arxiv_source observed=2026-08-06T05:36:44.585048Z digest=sha256:bf5f27f3c991aa755c4cea24632fa2052cada0a1a6f36694ec4d4ba2e01c87fe

Observation 0420772a-fb2f-42d3-b55d-a5887fd0608a · outbound

This paper cites Moving closer towards a comprehensive view of tumor biology and microarchitecture using spatial transcriptomics.

A Large-Scale Benchmark of Cross-Modal Learning for Histology and Gene Expression in Spatial Transcriptomics Moving closer towards a comprehensive view of tumor biology and microarchitecture using spatial transcriptomics

Reference 39

Resolution
verified fuzzy
raw_fallback, observed 2026-08-06T05:36:45.712740Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-20T06:33:59.587034+00:00.

source=arxiv_source observed=2026-08-06T05:36:44.598566Z digest=sha256:46ca739fa9e034f9e6043376d4f6f2d3ab1688322fc95370b37fafea3bb2af5d

Observation fa24f5de-68ba-4cd8-8faf-4ad39970c2ae · outbound

This paper cites Learning transferable visual models from natural language supervision.

A Large-Scale Benchmark of Cross-Modal Learning for Histology and Gene Expression in Spatial Transcriptomics Learning transferable visual models from natural language supervision

Reference 40

Resolution
verified fuzzy
raw_fallback, observed 2026-08-06T05:36:45.691220Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-20T06:33:59.587034+00:00.

source=arxiv_source observed=2026-08-06T05:36:44.606099Z digest=sha256:e149b0769e28917550ecbac32efb8a4d8b461fbb1f3e0d1256ac2c623f726b1e

Observation b1a43759-34a1-4230-a3c8-41e2cfc11e79 · outbound

This paper cites Exploring tissue architecture using spatial transcriptomics.

A Large-Scale Benchmark of Cross-Modal Learning for Histology and Gene Expression in Spatial Transcriptomics Exploring tissue architecture using spatial transcriptomics

Reference 41

Resolution
verified fuzzy
raw_fallback, observed 2026-08-06T05:36:45.654361Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-20T06:33:59.587034+00:00.

source=arxiv_source observed=2026-08-06T05:36:44.614182Z digest=sha256:a92c339a7db294ea4b2e8c784eb2b0bd3876ef3640ebf761b46c5872aaffc110

Observation b1b41bd8-6c26-4a13-9b9f-36ee374d49a0 · outbound

This paper cites Universal cell embeddings: A foundation model for cell biology.

A Large-Scale Benchmark of Cross-Modal Learning for Histology and Gene Expression in Spatial Transcriptomics Universal cell embeddings: A foundation model for cell biology

Reference 42

Resolution
verified fuzzy
raw_fallback, observed 2026-08-06T05:36:45.621776Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-20T06:33:59.587034+00:00.

source=arxiv_source observed=2026-08-06T05:36:44.622143Z digest=sha256:a1d8ca0cb503172cb39db3926fd8580efb1e2b7b1c7c411dcbf9952e2ba623f7

Observation 6e3eda38-b1f6-4bee-aa16-191eeecd938c · outbound

This paper cites H-optimus-0, 2024.

A Large-Scale Benchmark of Cross-Modal Learning for Histology and Gene Expression in Spatial Transcriptomics H-optimus-0, 2024

Reference 43

Resolution
verified fuzzy
raw_fallback, observed 2026-08-06T05:36:45.588421Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-20T06:33:59.587034+00:00.

source=arxiv_source observed=2026-08-06T05:36:44.628196Z digest=sha256:34af978c0693f3bb6e197d4b919b402bf162281d1b8d41ebea6a83805c99559a

Observation 0c549adb-b4e4-4adf-a2f7-0012f673170d · outbound

This paper cites Nicheformer: a foundation model for single-cell and spatial omics.

A Large-Scale Benchmark of Cross-Modal Learning for Histology and Gene Expression in Spatial Transcriptomics Nicheformer: a foundation model for single-cell and spatial omics

Reference 44

Resolution
verified fuzzy
raw_fallback, observed 2026-08-06T05:36:45.565290Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-20T06:33:59.587034+00:00.

source=arxiv_source observed=2026-08-06T05:36:44.636405Z digest=sha256:3a40e3e8fc37554562a2b0d4c234ca56e58ca4c048e1f217f66cf113ae090377

Observation ceaf244e-8a0a-4113-9fb8-207cb641b399 · outbound

This paper cites A deep learning model to predict RNA -seq expression of tumours from whole slide images.

A Large-Scale Benchmark of Cross-Modal Learning for Histology and Gene Expression in Spatial Transcriptomics A deep learning model to predict RNA -seq expression of tumours from whole slide images

Reference 45

Resolution
verified fuzzy
raw_fallback, observed 2026-08-06T05:36:45.525544Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-20T06:33:59.587034+00:00.

source=arxiv_source observed=2026-08-06T05:36:44.648396Z digest=sha256:a5d68d7cad17782c323dcfcf85ec3241eec0eb4eb011b8a1c9a7127fea6d7e87

Observation 46434532-6a60-4252-9133-f820db22e174 · outbound

This paper cites Kunz, Juan A.

A Large-Scale Benchmark of Cross-Modal Learning for Histology and Gene Expression in Spatial Transcriptomics Kunz, Juan A

Reference 46

Resolution
verified fuzzy
raw_fallback, observed 2026-08-06T05:36:45.499598Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-20T06:33:59.587034+00:00.

source=arxiv_source observed=2026-08-06T05:36:44.654588Z digest=sha256:6b611bd36812b29aed5a07b8fe7eb1e4e0d830484ca374c49c1787395a380656

Observation b379101e-d767-473d-8722-9853f4236cf0 · outbound

This paper cites Generating highly accurate pathology reports from gigapixel whole slide images with histogpt.

A Large-Scale Benchmark of Cross-Modal Learning for Histology and Gene Expression in Spatial Transcriptomics Generating highly accurate pathology reports from gigapixel whole slide images with histogpt

Reference 47

Resolution
verified fuzzy
raw_fallback, observed 2026-08-06T05:36:45.473111Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-20T06:33:59.587034+00:00.

source=arxiv_source observed=2026-08-06T05:36:44.663364Z digest=sha256:19594d1e65de7677ec1cb188231d9ee0ce9f1c5b5370a76d9609e7b935a95c71

Observation 72a9f0c3-9235-426a-b903-bdce313c127e · outbound

This paper cites Molecular-driven Foundation Model for Oncologic Pathology.

A Large-Scale Benchmark of Cross-Modal Learning for Histology and Gene Expression in Spatial Transcriptomics Molecular-driven Foundation Model for Oncologic Pathology

Reference 48

Resolution
unresolved
no resolver link, observed 2026-08-06T05:36:44.672000Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

source=arxiv_source observed=2026-08-06T05:36:44.672000Z digest=sha256:10d095a6578fe9dfb8cb26f0ebcd3fe15c4cce91b78c8eb01514d7e81cdc8151

Observation 3aeb2f53-fc19-4df6-af9d-1085d4f69985 · outbound

This paper cites Williams, Nicholas M.

A Large-Scale Benchmark of Cross-Modal Learning for Histology and Gene Expression in Spatial Transcriptomics Williams, Nicholas M

Reference 49

Resolution
verified fuzzy
raw_fallback, observed 2026-08-06T05:36:45.442798Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-20T06:33:59.587034+00:00.

source=arxiv_source observed=2026-08-06T05:36:44.680988Z digest=sha256:f05ef5bc2835f01b9d41f0f6e1fe12aa258fc5e50a4ac73a7757bddd5f62f070

Observation 62e78b30-8f09-48dc-8792-03cfa8ef02f4 · outbound

This paper cites A foundation model for clinical-grade computational pathology and rare cancers detection.

A Large-Scale Benchmark of Cross-Modal Learning for Histology and Gene Expression in Spatial Transcriptomics A foundation model for clinical-grade computational pathology and rare cancers detection

Reference 50

Resolution
verified fuzzy
raw_fallback, observed 2026-08-06T05:36:45.407465Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-20T06:33:59.587034+00:00.

source=arxiv_source observed=2026-08-06T05:36:44.694231Z digest=sha256:016a922c3a8230339560636991c8bb8f3f89948ae876bbd271cbef21443d015e

Observation 73c735b4-5f0c-413e-ba06-d9b4c92e74e8 · outbound

This paper cites Transformer-based biomarker prediction from colorectal cancer histology: A large-scale multicentric study.

A Large-Scale Benchmark of Cross-Modal Learning for Histology and Gene Expression in Spatial Transcriptomics Transformer-based biomarker prediction from colorectal cancer histology: A large-scale multicentric study

Reference 51

Resolution
verified fuzzy
raw_fallback, observed 2026-08-06T05:36:45.388233Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-20T06:33:59.587034+00:00.

source=arxiv_source observed=2026-08-06T05:36:44.708865Z digest=sha256:6811db2d8aab4e4c3fc9ad52dcf4ddd34c2fa62d76a0893497ed118c661a4a9a

Observation 67dba3d3-51f5-4aa6-868b-6ed71f963fcf · outbound

This paper cites scgpt-spatial: Continual pretraining of single-cell foundation model for spatial transcriptomics.

A Large-Scale Benchmark of Cross-Modal Learning for Histology and Gene Expression in Spatial Transcriptomics scgpt-spatial: Continual pretraining of single-cell foundation model for spatial transcriptomics

Reference 52

Resolution
verified fuzzy
raw_fallback, observed 2026-08-06T05:36:45.357598Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-20T06:33:59.587034+00:00.

source=arxiv_source observed=2026-08-06T05:36:44.717324Z digest=sha256:69226a08d156aed1d1dc3fac4408af13c8d7dbb338cce27d185ad693ddae3beb

Observation 5aaee62b-90e1-4128-be23-1ca9226b9a1a · outbound

This paper cites Transformer-based unsupervised contrastive learning for histopathological image classification.

A Large-Scale Benchmark of Cross-Modal Learning for Histology and Gene Expression in Spatial Transcriptomics Transformer-based unsupervised contrastive learning for histopathological image classification

Reference 53

Resolution
verified fuzzy
raw_fallback, observed 2026-08-06T05:36:45.331480Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-20T06:33:59.587034+00:00.

source=arxiv_source observed=2026-08-06T05:36:44.722255Z digest=sha256:b1e4125df0722ed0cd37e8347023160f662c748ee4d87a139285f2a69c35d5e3

Observation 51784aec-d918-4f1f-9dff-b541066a08f8 · outbound

This paper cites Retccl: Clustering-guided contrastive learning for whole-slide image retrieval.

A Large-Scale Benchmark of Cross-Modal Learning for Histology and Gene Expression in Spatial Transcriptomics Retccl: Clustering-guided contrastive learning for whole-slide image retrieval

Reference 54

Resolution
verified fuzzy
raw_fallback, observed 2026-08-06T05:36:45.299644Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-20T06:33:59.587034+00:00.

source=arxiv_source observed=2026-08-06T05:36:44.726993Z digest=sha256:44d7264e1be873a0eba58f2319d52e274e66def91dec1b13218d777eb806a55d

Observation 73493bd8-664e-4887-b5a9-7c9e27800012 · outbound

This paper cites The cancer genome atlas pan-cancer analysis project.

A Large-Scale Benchmark of Cross-Modal Learning for Histology and Gene Expression in Spatial Transcriptomics The cancer genome atlas pan-cancer analysis project

Reference 55

Resolution
verified fuzzy
raw_fallback, observed 2026-08-06T05:36:45.265815Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-20T06:33:59.587034+00:00.

source=arxiv_source observed=2026-08-06T05:36:44.733017Z digest=sha256:3bae1177fa66b1bfebf9e59e6cf2efa5381e13b222a25d29b1e7fc619b092dca

Observation 56ac51e5-c367-4fad-9247-1e3bd9ce3283 · outbound

This paper cites SCANPY : large-scale single-cell gene expression data analysis.

A Large-Scale Benchmark of Cross-Modal Learning for Histology and Gene Expression in Spatial Transcriptomics SCANPY : large-scale single-cell gene expression data analysis

Reference 56

Resolution
verified fuzzy
raw_fallback, observed 2026-08-06T05:36:45.224778Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-20T06:33:59.587034+00:00.

source=arxiv_source observed=2026-08-06T05:36:44.738522Z digest=sha256:4877e5624a70fb230c24f5cde123450313867bbe615ed9b7eade970075b4073a

Observation 1af7e9ea-b883-4084-a3a0-293b03c59085 · outbound

This paper cites Nirschl, Joel Neal, Maximilian Diehn, Sen Yang, and Ruijiang Li.

A Large-Scale Benchmark of Cross-Modal Learning for Histology and Gene Expression in Spatial Transcriptomics Nirschl, Joel Neal, Maximilian Diehn, Sen Yang, and Ruijiang Li

Reference 57

Resolution
verified fuzzy
raw_fallback, observed 2026-08-06T05:36:45.203141Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-20T06:33:59.587034+00:00.

source=arxiv_source observed=2026-08-06T05:36:44.744253Z digest=sha256:b2076edcd5d0a6706be7f76dd73bc31a430e8d2a6736e7fc1f7fd41fa7114932

Observation e119abec-4ad6-4f2a-90be-12ff760d85f6 · outbound

This paper cites Spatially resolved gene expression prediction from histology images via bi-modal contrastive learning.

A Large-Scale Benchmark of Cross-Modal Learning for Histology and Gene Expression in Spatial Transcriptomics Spatially resolved gene expression prediction from histology images via bi-modal contrastive learning

Reference 58

Resolution
verified fuzzy
raw_fallback, observed 2026-08-06T05:36:45.169549Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-20T06:33:59.587034+00:00.

source=arxiv_source observed=2026-08-06T05:36:44.755846Z digest=sha256:694b9ccfc169cd7fe545442e75b810e72efa73a2e66426168346322db04ebcda

Observation 7b24b661-cf71-4e48-b559-7c652b4b7a10 · outbound

This paper cites A whole-slide foundation model for digital pathology from real-world data.

A Large-Scale Benchmark of Cross-Modal Learning for Histology and Gene Expression in Spatial Transcriptomics A whole-slide foundation model for digital pathology from real-world data

Reference 59

Resolution
verified fuzzy
raw_fallback, observed 2026-08-06T05:36:45.125753Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-20T06:33:59.587034+00:00.

source=arxiv_source observed=2026-08-06T05:36:44.761720Z digest=sha256:beeef231d22efeb02018ca294853c2738f3549a896be477eb9d21fefe3635904

Observation 9b26c7d2-ff59-488c-b0bf-69492cb58693 · outbound

This paper cites Sigmoid loss for language image pre-training, 2023.

A Large-Scale Benchmark of Cross-Modal Learning for Histology and Gene Expression in Spatial Transcriptomics Sigmoid loss for language image pre-training, 2023

Reference 60

Resolution
unresolved
no resolver link, observed 2026-08-06T05:36:44.767357Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

source=arxiv_source observed=2026-08-06T05:36:44.767357Z digest=sha256:a9596b2a3700313b4c1aaecc9ee67238c56f1634d9a7337c115a1cf239a713cb

Observation c2bbf966-49f8-4b5f-aee3-ebd3d39e6b4e · outbound

This paper cites Accelerating data processing and benchmarking of ai models for pathology, 2025.

A Large-Scale Benchmark of Cross-Modal Learning for Histology and Gene Expression in Spatial Transcriptomics Accelerating data processing and benchmarking of ai models for pathology, 2025

Reference 61

Resolution
verified fuzzy
raw_fallback, observed 2026-08-06T05:36:45.089791Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-20T06:33:59.587034+00:00.

source=arxiv_source observed=2026-08-06T05:36:44.775234Z digest=sha256:98b35c0d4b7fb4161503b8856730b2a0c58f95c32788445db26e05a85197272f

Observation 8a7e388f-ab7d-46aa-835a-ef8dbac8f23f · outbound

This paper cites Inferring super-resolution tissue architecture by integrating spatial transcriptomics with histology.

A Large-Scale Benchmark of Cross-Modal Learning for Histology and Gene Expression in Spatial Transcriptomics Inferring super-resolution tissue architecture by integrating spatial transcriptomics with histology

Reference 62

Resolution
verified fuzzy
raw_fallback, observed 2026-08-06T05:36:45.063340Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-20T06:33:59.587034+00:00.

source=arxiv_source observed=2026-08-06T05:36:44.784657Z digest=sha256:5d92ff680261934ea73e380746915765631d628f00fc92724b4f626687d2c921

Observation 3e47b16e-2e61-4b7d-afaf-3b0f9add296b · outbound

This paper cites Conrad, Emily J.

A Large-Scale Benchmark of Cross-Modal Learning for Histology and Gene Expression in Spatial Transcriptomics Conrad, Emily J

Reference 63

Resolution
verified fuzzy
raw_fallback, observed 2026-08-06T05:36:45.028296Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-20T06:33:59.587034+00:00.

source=arxiv_source observed=2026-08-06T05:36:44.790811Z digest=sha256:8130d7753eff32bd0c04daeaa3e3a687622efde2c491f96160408eef0cfaddfb

Pith citing papers

No inbound Pith citation observations are available.