Splitting mixed Hodge structures over affine invariant manifolds

We prove that affine invariant manifolds in strata of flat surfaces are algebraic varieties. The result is deduced from a generalization of a theorem of M\"oller. Namely, we prove that the image of a certain twisted Abel-Jacobi map lands in the torsion of a factor of the Jacobians. This statement can be viewed as a splitting of certain mixed Hodge structures.