Paper Citation Record · LEDGER

GeneQuery: A General QA-based Framework for Spatial Gene Expression Predictions from Histology Images

As of 23 August 2026, this Paper Citation Record lists 16 of 16 outbound references and 0 inbound Pith citation observations for arXiv:2411.18391.

A citation records a reference. It does not transfer a finding from one paper to another.

pith.paper-citation-record.v1
2411.18391 v1

Coverage vector

measured 16 of 16 reference resolution

Typed states for the displayed outbound observations.

Source: paper_references, paper_reference_links, observed 2026-08-12T11:18:42.467694Z

measured 16 of 16 standing notices

One-hop event checks from named stored sources.

Source: scholarly_work_events, retraction_status_cache, observed 2026-08-23T06:30:58.430688+00:00

measured 0 of 0 inbound itemization

Pith citing papers itemized under the disclosed page cap.

Source: paper_references, paper_reference_links

measured 0 of 1 external citation measurements

A source-named dated measurement, never combined with another source.

Source: cited_works

Reference resolution

16 of 16 outbound references displayed

verified exact0
verified fuzzy9
unresolved7
parse uncertain0
malformed identifier0
metadata mismatch0

External citation measurements

No source-named external measurement is stored.

Outbound references

Observation 2f390a7b-1261-48ab-b0e0-25d4d6d2d85d · outbound

This paper cites Visualization and analysis of gene expression in tissue sections by spatial transcriptomics.

GeneQuery: A General QA-based Framework for Spatial Gene Expression Predictions from Histology Images Visualization and analysis of gene expression in tissue sections by spatial transcriptomics

Reference 1

Resolution: unresolved; no resolver link, observed 2026-08-12T11:18:42.382181Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation f5c89e6b-d3e0-4a89-82ee-5370af06928d · outbound

This paper cites Spatially resolved, highly multiplexed rna profiling in single cells.

GeneQuery: A General QA-based Framework for Spatial Gene Expression Predictions from Histology Images Spatially resolved, highly multiplexed rna profiling in single cells

Reference 2

Resolution: unresolved; no resolver link, observed 2026-08-12T11:18:42.408315Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation dc7fd3bf-e185-483a-b9d1-4297f2af1753 · outbound

This paper cites Transcriptome-scale super-resolved imaging in tissues by rna seqfish+.

GeneQuery: A General QA-based Framework for Spatial Gene Expression Predictions from Histology Images Transcriptome-scale super-resolved imaging in tissues by rna seqfish+

Reference 3

Resolution: unresolved; no resolver link, observed 2026-08-12T11:18:42.414032Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation 7d5adcd8-e1a0-45f3-84b1-cd24bf83397e · outbound

This paper cites Three-dimensional intact-tissue sequencing of single-cell transcriptional states.

GeneQuery: A General QA-based Framework for Spatial Gene Expression Predictions from Histology Images Three-dimensional intact-tissue sequencing of single-cell transcriptional states

Reference 4

Resolution: unresolved; no resolver link, observed 2026-08-12T11:18:42.419341Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation edf46db4-7116-4207-9973-8986d4d8ad37 · outbound

This paper cites Spatial organization of the somatosensory cortex revealed by osmfish.

GeneQuery: A General QA-based Framework for Spatial Gene Expression Predictions from Histology Images Spatial organization of the somatosensory cortex revealed by osmfish

Reference 5

Resolution: verified fuzzy; raw_fallback, observed 2026-08-12T11:18:43.147699Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-23T06:30:58.430688+00:00.

Observation 93101666-18b5-4401-b187-1b65fe5d9ab2 · outbound

This paper cites Expansion sequencing: Spatially precise in situ transcriptomics in intact biological systems.

GeneQuery: A General QA-based Framework for Spatial Gene Expression Predictions from Histology Images Expansion sequencing: Spatially precise in situ transcriptomics in intact biological systems

Reference 6

Resolution: verified fuzzy; raw_fallback, observed 2026-08-12T11:18:43.122437Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-23T06:30:58.430688+00:00.

Observation 7f84fc79-6ed4-47f7-8fc5-5e61a26fff5c · outbound

This paper cites Integrating spatial gene expression and breast tumour morphology via deep learning.

GeneQuery: A General QA-based Framework for Spatial Gene Expression Predictions from Histology Images Integrating spatial gene expression and breast tumour morphology via deep learning

Reference 7

Resolution: verified fuzzy; raw_fallback, observed 2026-08-12T11:18:43.021723Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-23T06:30:58.430688+00:00.

Observation 3e918106-5a39-4714-8fb4-9320ec016fa1 · outbound

This paper cites Leveraging information in spatial transcriptomics to predict super-resolution gene expression from histology images in tumors.

GeneQuery: A General QA-based Framework for Spatial Gene Expression Predictions from Histology Images Leveraging information in spatial transcriptomics to predict super-resolution gene expression from histology images in tumors

Reference 8

Resolution: unresolved; no resolver link, observed 2026-08-12T11:18:42.437119Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation 397a4d9c-d071-45c2-89bf-1e2a78845ef2 · outbound

This paper cites an unresolved cited work.

GeneQuery: A General QA-based Framework for Spatial Gene Expression Predictions from Histology Images Unresolved cited work

Reference 9

Resolution: unresolved; raw_fallback, observed 2026-08-12T11:18:42.868544Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-23T06:30:58.430688+00:00.

Observation d2975fe3-8c28-4cb5-b056-6be76161aa66 · outbound

This paper cites Deep residual learning for image recognition.

GeneQuery: A General QA-based Framework for Spatial Gene Expression Predictions from Histology Images Deep residual learning for image recognition

Reference 10

Resolution: verified fuzzy; raw_fallback, observed 2026-08-12T11:18:42.856106Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-23T06:30:58.430688+00:00.

Observation 9249fd36-5e47-4223-9d22-aaa88d6c32da · outbound

This paper cites An image is worth 16x16 words: Transformers for image recognition at scale.

GeneQuery: A General QA-based Framework for Spatial Gene Expression Predictions from Histology Images An image is worth 16x16 words: Transformers for image recognition at scale

Reference 11

Resolution: verified fuzzy; raw_fallback, observed 2026-08-12T11:18:42.842308Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-23T06:30:58.430688+00:00.

Observation 8f769f19-0358-4b7d-98bf-8a8919a493a3 · outbound

This paper cites A deep learning model to predict rna-seq expression of tumours from whole slide images.

GeneQuery: A General QA-based Framework for Spatial Gene Expression Predictions from Histology Images A deep learning model to predict rna-seq expression of tumours from whole slide images

Reference 12

Resolution: verified fuzzy; raw_fallback, observed 2026-08-12T11:18:42.829433Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-23T06:30:58.430688+00:00.

Observation 936f5797-f64e-448b-99e5-b16f746f5356 · outbound

This paper cites Detecting gene–gene interactions that underlie human diseases.

GeneQuery: A General QA-based Framework for Spatial Gene Expression Predictions from Histology Images Detecting gene–gene interactions that underlie human diseases

Reference 13

Resolution: verified fuzzy; raw_fallback, observed 2026-08-12T11:18:42.815906Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-23T06:30:58.430688+00:00.

Observation 7bcb673e-07a0-4307-b261-03c1b327b575 · outbound

This paper cites Optimized glycemic control of type 2 diabetes with reinforcement learning: a proof-of-concept trial.

GeneQuery: A General QA-based Framework for Spatial Gene Expression Predictions from Histology Images Optimized glycemic control of type 2 diabetes with reinforcement learning: a proof-of-concept trial

Reference 14

Resolution: verified fuzzy; raw_fallback, observed 2026-08-12T11:18:42.772430Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-23T06:30:58.430688+00:00.

Observation 24f7f5e5-7517-4755-a021-c43f5e514857 · outbound

This paper cites UMAP: Uniform Manifold Approximation and Projection for Dimension Reduction.

GeneQuery: A General QA-based Framework for Spatial Gene Expression Predictions from Histology Images UMAP: Uniform Manifold Approximation and Projection for Dimension Reduction

Reference 15

Resolution: unresolved; no resolver link, observed 2026-08-12T11:18:42.463531Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation 442158ca-02e2-4558-8979-a72e27aacfb9 · outbound

This paper cites From louvain to leiden: guaranteeing well-connected communities.

GeneQuery: A General QA-based Framework for Spatial Gene Expression Predictions from Histology Images From louvain to leiden: guaranteeing well-connected communities

Reference 16

Resolution: verified fuzzy; raw_fallback, observed 2026-08-12T11:18:42.588234Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-23T06:30:58.430688+00:00.

Pith citing papers

No inbound Pith citation observations are available.