Typed states for the displayed outbound observations.
Source: paper_references, paper_reference_links, observed 2026-08-05T17:57:18.777829Z
Paper Citation Record · LEDGER
Sesame: Opening the door to protein pockets
As of 21 August 2026, this Paper Citation Record lists 46 of 46 outbound references and 0 inbound Pith citation observations for arXiv:2509.05302.
A citation records a reference. It does not transfer a finding from one paper to another.
Coverage vector
One-hop event checks from named stored sources.
Source: scholarly_work_events, retraction_status_cache, observed 2026-08-21T06:32:19.484+00:00
Pith citing papers itemized under the disclosed page cap.
Source: paper_references, paper_reference_links
A source-named dated measurement, never combined with another source.
Source: cited_works
Reference resolution
46 of 46 outbound references displayed
- verified exact0
- verified fuzzy31
- unresolved15
- parse uncertain0
- malformed identifier0
- metadata mismatch0
External citation measurements
No source-named external measurement is stored.
Outbound references
Observation 48be334f-0800-47a0-a39a-6ee79bd544d6 · outbound
This paper cites Ballard, Joshua Bambrick, Sebastian W.
Sesame: Opening the door to protein pockets Ballard, Joshua Bambrick, Sebastian W
Reference 1
- Resolution
- verified fuzzy
- raw_fallback, observed 2026-08-05T17:57:24.870542Z
Source-reported events for the cited work
No event found in the named queried sources as of 2026-08-21T06:32:19.484+00:00.
Observation 210e1abd-0715-4cdc-9ada-c287e8d5cc14 · outbound
This paper cites Stochastic Interpolants: A Unifying Framework for Flows and Diffusions.
Sesame: Opening the door to protein pockets Stochastic Interpolants: A Unifying Framework for Flows and Diffusions
Reference 2
- Resolution
- unresolved
- no resolver link, observed 2026-08-05T17:57:14.742648Z
Source-reported events for the cited work
Unavailable: canonical work link unavailable.
Observation 0a472609-5390-4166-92fc-c30c2914690b · outbound
This paper cites Very fast prediction and rationalization of pKa values for protein-ligand complexes.
Sesame: Opening the door to protein pockets Very fast prediction and rationalization of pKa values for protein-ligand complexes
Reference 3
- Resolution
- verified fuzzy
- raw_fallback, observed 2026-08-05T17:57:24.656250Z
Source-reported events for the cited work
No event found in the named queried sources as of 2026-08-21T06:32:19.484+00:00.
Observation 6bd59809-c980-4cea-87a8-3a7dca139cee · outbound
This paper cites Holo-like and druggable protein conformations from enhanced sampling of binding pocket volume and shape.
Sesame: Opening the door to protein pockets Holo-like and druggable protein conformations from enhanced sampling of binding pocket volume and shape
Reference 4
- Resolution
- verified fuzzy
- raw_fallback, observed 2026-08-05T17:57:24.509240Z
Source-reported events for the cited work
No event found in the named queried sources as of 2026-08-21T06:32:19.484+00:00.
Observation f5b4a4c1-62c9-4c64-b51d-098eae564487 · outbound
This paper cites A practical guide to large-scale docking.
Sesame: Opening the door to protein pockets A practical guide to large-scale docking
Reference 5
- Resolution
- verified fuzzy
- raw_fallback, observed 2026-08-05T17:57:24.334025Z
Source-reported events for the cited work
No event found in the named queried sources as of 2026-08-21T06:32:19.484+00:00.
Observation 05d3ed9a-7cbe-498e-acc1-b53e440d9d06 · outbound
This paper cites SE(3) -stochastic flow matching for protein backbone generation.
Sesame: Opening the door to protein pockets SE(3) -stochastic flow matching for protein backbone generation
Reference 6
- Resolution
- verified fuzzy
- raw_fallback, observed 2026-08-05T17:57:24.146529Z
Source-reported events for the cited work
No event found in the named queried sources as of 2026-08-21T06:32:19.484+00:00.
Observation 6e09682c-5f7b-4131-9344-fc5c3ab306fe · outbound
This paper cites AmberTools.
Sesame: Opening the door to protein pockets AmberTools
Reference 7
- Resolution
- verified fuzzy
- raw_fallback, observed 2026-08-05T17:57:23.987658Z
Source-reported events for the cited work
No event found in the named queried sources as of 2026-08-21T06:32:19.484+00:00.
Observation b3f3120a-e777-4345-a1f3-92bf73eb140d · outbound
This paper cites Flow Matching on General Geometries.
Sesame: Opening the door to protein pockets Flow Matching on General Geometries
Reference 8
- Resolution
- unresolved
- no resolver link, observed 2026-08-05T17:57:15.376266Z
Source-reported events for the cited work
Unavailable: canonical work link unavailable.
Observation 9e077f75-e2cc-4b9f-9b28-58ef7f06f186 · outbound
This paper cites an unresolved cited work.
Sesame: Opening the door to protein pockets Unresolved cited work
Reference 9
- Resolution
- unresolved
- raw_fallback, observed 2026-08-05T17:57:23.834325Z
Source-reported events for the cited work
No event found in the named queried sources as of 2026-08-21T06:32:19.484+00:00.
Observation 8c250659-704e-4900-a6b5-05af8b873959 · outbound
This paper cites Jaakkola.
Reference 10
- Resolution
- verified fuzzy
- raw_fallback, observed 2026-08-05T17:57:23.609400Z
Source-reported events for the cited work
No event found in the named queried sources as of 2026-08-21T06:32:19.484+00:00.
Observation dcfc9b0d-ae3a-4a3c-bc66-7fbe6e0c8614 · outbound
This paper cites Pymol: An open-source molecular graphics tool.
Sesame: Opening the door to protein pockets Pymol: An open-source molecular graphics tool
Reference 11
- Resolution
- verified fuzzy
- raw_fallback, observed 2026-08-05T17:57:23.390240Z
Source-reported events for the cited work
No event found in the named queried sources as of 2026-08-21T06:32:19.484+00:00.
Observation 6a660f2b-6d6b-4c34-85c6-3ec8059f22ef · outbound
This paper cites Are deep learning structural models sufficiently accurate for virtual screening? Application of docking algorithms to AlphaFold2 predicted structures.
Sesame: Opening the door to protein pockets Are deep learning structural models sufficiently accurate for virtual screening? Application of docking algorithms to AlphaFold2 predicted structures
Reference 12
- Resolution
- verified fuzzy
- raw_fallback, observed 2026-08-05T17:57:23.227129Z
Source-reported events for the cited work
No event found in the named queried sources as of 2026-08-21T06:32:19.484+00:00.
Observation 90a71279-15ff-4ba5-ac12-ff59912c910a · outbound
This paper cites an unresolved cited work.
Sesame: Opening the door to protein pockets Unresolved cited work
Reference 13
- Resolution
- unresolved
- raw_fallback, observed 2026-08-05T17:57:23.069426Z
Source-reported events for the cited work
No event found in the named queried sources as of 2026-08-21T06:32:19.484+00:00.
Observation bc656f53-1a7b-4319-8b2a-5bbee50ba489 · outbound
This paper cites Ligand-induced conformational changes: improved predictions of ligand binding conformations and affinities.
Sesame: Opening the door to protein pockets Ligand-induced conformational changes: improved predictions of ligand binding conformations and affinities
Reference 14
- Resolution
- verified fuzzy
- raw_fallback, observed 2026-08-05T17:57:22.896362Z
Source-reported events for the cited work
No event found in the named queried sources as of 2026-08-21T06:32:19.484+00:00.
Observation a8c54330-b3ed-4c6e-b685-5f94a633c39b · outbound
This paper cites Computational fragment-based binding site identification by ligand competitive saturation.
Sesame: Opening the door to protein pockets Computational fragment-based binding site identification by ligand competitive saturation
Reference 15
- Resolution
- verified fuzzy
- raw_fallback, observed 2026-08-05T17:57:22.740299Z
Source-reported events for the cited work
No event found in the named queried sources as of 2026-08-21T06:32:19.484+00:00.
Observation a2923408-1e66-4b7a-b735-f5d5fd5c382c · outbound
This paper cites Glide: a new approach for rapid, accurate docking and scoring.
Sesame: Opening the door to protein pockets Glide: a new approach for rapid, accurate docking and scoring
Reference 16
- Resolution
- verified fuzzy
- raw_fallback, observed 2026-08-05T17:57:22.529523Z
Source-reported events for the cited work
No event found in the named queried sources as of 2026-08-21T06:32:19.484+00:00.
Observation 5e7aafb7-b6cd-4a70-b569-3ad768303a0b · outbound
This paper cites A nickel abc-transporter of staphylococcus aureus is involved in urinary tract infection.
Sesame: Opening the door to protein pockets A nickel abc-transporter of staphylococcus aureus is involved in urinary tract infection
Reference 17
- Resolution
- verified fuzzy
- raw_fallback, observed 2026-08-05T17:57:22.339576Z
Source-reported events for the cited work
No event found in the named queried sources as of 2026-08-21T06:32:19.484+00:00.
Observation f80d3c56-9b87-4ad9-9c1e-f14f5472df9c · outbound
This paper cites Cryptic pocket formation underlies allosteric modulator selectivity at muscarinic gpcrs.
Sesame: Opening the door to protein pockets Cryptic pocket formation underlies allosteric modulator selectivity at muscarinic gpcrs
Reference 18
- Resolution
- unresolved
- no resolver link, observed 2026-08-05T17:57:16.427777Z
Source-reported events for the cited work
Unavailable: canonical work link unavailable.
Observation 724ee5f9-d0f1-49ff-bc40-1617c3175a45 · outbound
This paper cites A hierarchical approach to all-atom protein loop prediction.
Sesame: Opening the door to protein pockets A hierarchical approach to all-atom protein loop prediction
Reference 19
- Resolution
- verified fuzzy
- raw_fallback, observed 2026-08-05T17:57:22.177091Z
Source-reported events for the cited work
No event found in the named queried sources as of 2026-08-21T06:32:19.484+00:00.
Observation db1c1aea-40a8-42c0-8f8a-9452f486ee86 · outbound
This paper cites AlphaFold Meets Flow Matching for Generating Protein Ensembles.
Sesame: Opening the door to protein pockets AlphaFold Meets Flow Matching for Generating Protein Ensembles
Reference 20
- Resolution
- unresolved
- no resolver link, observed 2026-08-05T17:57:16.565423Z
Source-reported events for the cited work
Unavailable: canonical work link unavailable.
Observation d2abe475-9834-40f5-a576-d83cb90b617b · outbound
This paper cites Highly accurate protein structure prediction with AlphaFold.
Sesame: Opening the door to protein pockets Highly accurate protein structure prediction with AlphaFold
Reference 21
- Resolution
- unresolved
- no resolver link, observed 2026-08-05T17:57:16.611271Z
Source-reported events for the cited work
Unavailable: canonical work link unavailable.
Observation 55bf94b0-2eaf-4e0c-bc77-20a148f9d1f9 · outbound
This paper cites A solution for the best rotation to relate two sets of vectors.
Sesame: Opening the door to protein pockets A solution for the best rotation to relate two sets of vectors
Reference 22
- Resolution
- verified fuzzy
- raw_fallback, observed 2026-08-05T17:57:22.037514Z
Source-reported events for the cited work
No event found in the named queried sources as of 2026-08-21T06:32:19.484+00:00.
Observation 05658035-6794-474b-ac4b-0f766c1b9ee7 · outbound
This paper cites A survey of the Schr\"odinger problem and some of its connections with optimal transport.
Sesame: Opening the door to protein pockets A survey of the Schr\"odinger problem and some of its connections with optimal transport
Reference 23
- Resolution
- unresolved
- no resolver link, observed 2026-08-05T17:57:16.783120Z
Source-reported events for the cited work
Unavailable: canonical work link unavailable.
Observation c6c80712-43ba-4391-8208-8e497d2c495b · outbound
This paper cites The VSGB 2.0 model: a next generation energy model for high resolution protein structure modeling.
Sesame: Opening the door to protein pockets The VSGB 2.0 model: a next generation energy model for high resolution protein structure modeling
Reference 24
- Resolution
- verified fuzzy
- raw_fallback, observed 2026-08-05T17:57:21.892576Z
Source-reported events for the cited work
No event found in the named queried sources as of 2026-08-21T06:32:19.484+00:00.
Observation c5132731-8036-4563-b890-4b8c5e9b2826 · outbound
This paper cites Flow Matching for Generative Modeling.
Sesame: Opening the door to protein pockets Flow Matching for Generative Modeling
Reference 25
- Resolution
- unresolved
- no resolver link, observed 2026-08-05T17:57:16.997855Z
Source-reported events for the cited work
Unavailable: canonical work link unavailable.
Observation 0715e6c3-f607-4f57-affc-2014ccb79aef · outbound
This paper cites Forging the basis for developing protein--ligand interaction scoring functions.
Sesame: Opening the door to protein pockets Forging the basis for developing protein--ligand interaction scoring functions
Reference 26
- Resolution
- verified fuzzy
- raw_fallback, observed 2026-08-05T17:57:21.742244Z
Source-reported events for the cited work
No event found in the named queried sources as of 2026-08-21T06:32:19.484+00:00.
Observation 702eb3f6-8cd8-423b-9c6e-642efa66c818 · outbound
This paper cites OPLS4 : Improving force field accuracy on challenging regimes of chemical space.
Sesame: Opening the door to protein pockets OPLS4 : Improving force field accuracy on challenging regimes of chemical space
Reference 27
- Resolution
- verified fuzzy
- raw_fallback, observed 2026-08-05T17:57:21.572009Z
Source-reported events for the cited work
No event found in the named queried sources as of 2026-08-21T06:32:19.484+00:00.
Observation 294297b5-8b4c-4595-ae88-1f9de893f02b · outbound
This paper cites ff14SB : improving the accuracy of protein side chain and backbone parameters from ff99SB.
Sesame: Opening the door to protein pockets ff14SB : improving the accuracy of protein side chain and backbone parameters from ff99SB
Reference 28
- Resolution
- verified fuzzy
- raw_fallback, observed 2026-08-05T17:57:21.396545Z
Source-reported events for the cited work
No event found in the named queried sources as of 2026-08-21T06:32:19.484+00:00.
Observation 6c70c041-4b28-4f53-89e2-1a5df6a7c207 · outbound
This paper cites Lotthammer, Felipe Oviedo, Juan Lavista Ferres, and Gregory R.
Sesame: Opening the door to protein pockets Lotthammer, Felipe Oviedo, Juan Lavista Ferres, and Gregory R
Reference 29
- Resolution
- verified fuzzy
- raw_fallback, observed 2026-08-05T17:57:21.207218Z
Source-reported events for the cited work
No event found in the named queried sources as of 2026-08-21T06:32:19.484+00:00.
Observation bd92042c-395b-4931-a048-675ebda166cb · outbound
This paper cites Molecular docking: a powerful approach for structure-based drug discovery.
Sesame: Opening the door to protein pockets Molecular docking: a powerful approach for structure-based drug discovery
Reference 30
- Resolution
- verified fuzzy
- raw_fallback, observed 2026-08-05T17:57:21.012322Z
Source-reported events for the cited work
No event found in the named queried sources as of 2026-08-21T06:32:19.484+00:00.
Observation 69069cad-33a8-496a-b7d4-930f40464cf0 · outbound
This paper cites Understanding cryptic pocket formation in protein targets by enhanced sampling simulations.
Sesame: Opening the door to protein pockets Understanding cryptic pocket formation in protein targets by enhanced sampling simulations
Reference 31
- Resolution
- verified fuzzy
- raw_fallback, observed 2026-08-05T17:57:20.850357Z
Source-reported events for the cited work
No event found in the named queried sources as of 2026-08-21T06:32:19.484+00:00.
Observation cc43863c-9632-4bd6-bb7a-7e53039a4738 · outbound
This paper cites D3PM : a comprehensive database for protein motions ranging from residue to domain.
Sesame: Opening the door to protein pockets D3PM : a comprehensive database for protein motions ranging from residue to domain
Reference 32
- Resolution
- verified fuzzy
- raw_fallback, observed 2026-08-05T17:57:20.661143Z
Source-reported events for the cited work
No event found in the named queried sources as of 2026-08-21T06:32:19.484+00:00.
Observation 0f1293a6-893c-49fb-8586-9c8668031a2a · outbound
This paper cites Divide and conquer.
Sesame: Opening the door to protein pockets Divide and conquer
Reference 33
- Resolution
- verified fuzzy
- raw_fallback, observed 2026-08-05T17:57:20.465379Z
Source-reported events for the cited work
No event found in the named queried sources as of 2026-08-21T06:32:19.484+00:00.
Observation 5e0b9dde-a1e8-463d-8ad3-d1e12f256eac · outbound
This paper cites Combining self-and cross-docking as benchmark tools: the performance of DockBench in the D3R Grand Challenge 2.
Sesame: Opening the door to protein pockets Combining self-and cross-docking as benchmark tools: the performance of DockBench in the D3R Grand Challenge 2
Reference 34
- Resolution
- verified fuzzy
- raw_fallback, observed 2026-08-05T17:57:20.292026Z
Source-reported events for the cited work
No event found in the named queried sources as of 2026-08-21T06:32:19.484+00:00.
Observation 5a6bde63-c323-43c4-b846-d296ec498e7c · outbound
This paper cites Protein and ligand preparation: parameters, protocols, and influence on virtual screening enrichments.
Sesame: Opening the door to protein pockets Protein and ligand preparation: parameters, protocols, and influence on virtual screening enrichments
Reference 35
- Resolution
- verified fuzzy
- raw_fallback, observed 2026-08-05T17:57:20.171899Z
Source-reported events for the cited work
No event found in the named queried sources as of 2026-08-21T06:32:19.484+00:00.
Observation bce03e9d-6610-4a56-9d86-74c44f1d8ee9 · outbound
This paper cites Aligned diffusion schr\"odinger bridges.
Sesame: Opening the door to protein pockets Aligned diffusion schr\"odinger bridges
Reference 36
- Resolution
- verified fuzzy
- raw_fallback, observed 2026-08-05T17:57:20.013187Z
Source-reported events for the cited work
No event found in the named queried sources as of 2026-08-21T06:32:19.484+00:00.
Observation f194e7d7-90c2-4cb1-bcbe-fa0baf388e3f · outbound
This paper cites Improving and generalizing flow-based generative models with minibatch optimal transport.
Sesame: Opening the door to protein pockets Improving and generalizing flow-based generative models with minibatch optimal transport
Reference 37
- Resolution
- unresolved
- no resolver link, observed 2026-08-05T17:57:17.946338Z
Source-reported events for the cited work
Unavailable: canonical work link unavailable.
Observation 9981e856-79bd-4c39-a80e-0bbe3d701ee6 · outbound
This paper cites Studying protein-ligand interactions using X -ray crystallography.
Sesame: Opening the door to protein pockets Studying protein-ligand interactions using X -ray crystallography
Reference 38
- Resolution
- verified fuzzy
- raw_fallback, observed 2026-08-05T17:57:19.856522Z
Source-reported events for the cited work
No event found in the named queried sources as of 2026-08-21T06:32:19.484+00:00.
Observation 96fc362a-e6c6-4416-b7e6-8d48197bbec9 · outbound
This paper cites The sirtuin family in health and disease.
Sesame: Opening the door to protein pockets The sirtuin family in health and disease
Reference 39
- Resolution
- verified fuzzy
- raw_fallback, observed 2026-08-05T17:57:19.695799Z
Source-reported events for the cited work
No event found in the named queried sources as of 2026-08-21T06:32:19.484+00:00.
Observation eae597a5-cfb2-4053-b356-a1b84afa5669 · outbound
This paper cites Fast protein backbone generation with SE(3) flow matching.
Sesame: Opening the door to protein pockets Fast protein backbone generation with SE(3) flow matching
Reference 40
- Resolution
- unresolved
- no resolver link, observed 2026-08-05T17:57:18.237599Z
Source-reported events for the cited work
Unavailable: canonical work link unavailable.
Observation e6210c6a-02be-4933-a7f4-515012538efb · outbound
This paper cites an unresolved cited work.
Sesame: Opening the door to protein pockets Unresolved cited work
Reference 41
- Resolution
- unresolved
- raw_fallback, observed 2026-08-05T17:57:19.539141Z
Source-reported events for the cited work
No event found in the named queried sources as of 2026-08-21T06:32:19.484+00:00.
Observation ddb2e5ef-42c5-494e-a2fe-1fe6dcf727c2 · outbound
This paper cites Bending and binding: Predicting protein flexibility upon ligand interaction using diffusion models.
Sesame: Opening the door to protein pockets Bending and binding: Predicting protein flexibility upon ligand interaction using diffusion models
Reference 42
- Resolution
- verified fuzzy
- raw_fallback, observed 2026-08-05T17:57:19.224266Z
Source-reported events for the cited work
No event found in the named queried sources as of 2026-08-21T06:32:19.484+00:00.
Observation 7192382e-f9e4-4b2c-825d-bb6b2d2c0776 · outbound
This paper cites write newline.
Sesame: Opening the door to protein pockets write newline
Reference 43
- Resolution
- unresolved
- no resolver link, observed 2026-08-05T17:57:18.484691Z
Source-reported events for the cited work
Unavailable: canonical work link unavailable.
Observation dd7c700e-8090-42ab-97e2-4c2512757cb6 · outbound
This paper cites @esa (Ref.
Reference 44
- Resolution
- unresolved
- no resolver link, observed 2026-08-05T17:57:18.611199Z
Source-reported events for the cited work
Unavailable: canonical work link unavailable.
Observation 8eb6121d-f04a-4eb2-b582-625bcf6a9cc7 · outbound
This paper cites an unresolved cited work.
Sesame: Opening the door to protein pockets Unresolved cited work
Reference 45
- Resolution
- unresolved
- no resolver link, observed 2026-08-05T17:57:18.698169Z
Source-reported events for the cited work
Unavailable: canonical work link unavailable.
Observation 93c21a5a-7b8d-464c-9bf8-c8cc3985b422 · outbound
This paper cites ÿ7O Æ K43yh] .] Ĉ 1dȐ ҥN +voӦM`Xdg\2l osuyyy뮻F]gϞѻwҥK s vꦛno9+gGQQQ Gaaa4h Zh -Z-[FvSNѩShݺuV2 i /bV.(((**hذa4o?m۶=#cu]#???+9 ]b̙1qxcҥE ŢE MF[V?ׯMQ *** JJJ.
Sesame: Opening the door to protein pockets ÿ7O Æ K43yh] .] Ĉ 1dȐ ҥN +voӦM`Xdg\2l osuyyy뮻F]gϞѻwҥK s vꦛno9+gGQQQ Gaaa4h Zh -Z-[FvSNѩShݺuV2 i /bV.(((**hذa4o?m۶=#cu]#???+9 ]b̙1qxcҥE ŢE MF[V?ׯMQ *** JJJ
Reference 46
- Resolution
- verified fuzzy
- raw_fallback, observed 2026-08-05T17:57:19.065303Z
Source-reported events for the cited work
No event found in the named queried sources as of 2026-08-21T06:32:19.484+00:00.
Pith citing papers
No inbound Pith citation observations are available.