Paper Citation Record · LEDGER

VTX: Real-time high-performance molecular structure and dynamics visualization software

As of 23 August 2026, this Paper Citation Record lists 30 of 30 outbound references and 0 inbound Pith citation observations for arXiv:2501.12750.

A citation records a reference. It does not transfer a finding from one paper to another.

pith.paper-citation-record.v1
2501.12750 v2

Coverage vector

measured 30 of 30 reference resolution

Typed states for the displayed outbound observations.

Source: paper_references, paper_reference_links, observed 2026-08-10T16:53:23.709733Z

measured 30 of 30 standing notices

One-hop event checks from named stored sources.

Source: scholarly_work_events, retraction_status_cache, observed 2026-08-23T06:30:58.430688+00:00

measured 0 of 0 inbound itemization

Pith citing papers itemized under the disclosed page cap.

Source: paper_references, paper_reference_links

measured 0 of 1 external citation measurements

A source-named dated measurement, never combined with another source.

Source: cited_works

Reference resolution

30 of 30 outbound references displayed

verified exact1
verified fuzzy24
unresolved5
parse uncertain0
malformed identifier0
metadata mismatch0

External citation measurements

No source-named external measurement is stored.

Outbound references

Observation 9d086c4d-0611-4847-913c-6fc0a8a8e433 · outbound

This paper cites an unresolved cited work.

VTX: Real-time high-performance molecular structure and dynamics visualization software Unresolved cited work

Reference 1

Resolution: unresolved; raw_fallback, observed 2026-08-10T16:53:24.506563Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-23T06:30:58.430688+00:00.

Observation 78002573-a06b-4f97-920c-c702934fd8f4 · outbound

This paper cites Atomic-resolution protein structure determination by cryo-em.

VTX: Real-time high-performance molecular structure and dynamics visualization software Atomic-resolution protein structure determination by cryo-em

Reference 2

Resolution: verified fuzzy; raw_fallback, observed 2026-08-10T16:53:24.479004Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-23T06:30:58.430688+00:00.

Observation 432a1aad-b4f6-4eea-9b57-681909027cee · outbound

This paper cites an unresolved cited work.

VTX: Real-time high-performance molecular structure and dynamics visualization software Unresolved cited work

Reference 3

Resolution: unresolved; raw_fallback, observed 2026-08-10T16:53:24.435485Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-23T06:30:58.430688+00:00.

Observation 1d55525f-fd1e-47e3-8de6-61ff7419a79c · outbound

This paper cites AlphaFold Protein Structure Database: massively expanding the structural coverage of protein-sequence space with high-accuracy models.

VTX: Real-time high-performance molecular structure and dynamics visualization software AlphaFold Protein Structure Database: massively expanding the structural coverage of protein-sequence space with high-accuracy models

Reference 4

Resolution: verified fuzzy; raw_fallback, observed 2026-08-10T16:53:24.375474Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-23T06:30:58.430688+00:00.

Observation f14bc1e4-6f22-4890-97c0-3048a8a35cac · outbound

This paper cites The need to implement FAIR principles in biomolecular simulations, August.

VTX: Real-time high-performance molecular structure and dynamics visualization software The need to implement FAIR principles in biomolecular simulations, August

Reference 5

Resolution: verified fuzzy; raw_fallback, observed 2026-08-10T16:53:24.306655Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-23T06:30:58.430688+00:00.

Observation a729d55a-eae9-476f-85dd-46b3940818a7 · outbound

This paper cites MD-DATA: the legacy of the ABC Consortium.

VTX: Real-time high-performance molecular structure and dynamics visualization software MD-DATA: the legacy of the ABC Consortium

Reference 6

Resolution: verified fuzzy; raw_fallback, observed 2026-08-10T16:53:24.283344Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-23T06:30:58.430688+00:00.

Observation 341953c1-9451-43bf-b1ce-5adca829ae9d · outbound

This paper cites Scaling molecular dynamics beyond 100,000 processor cores for large-scale biophysical simulations.

VTX: Real-time high-performance molecular structure and dynamics visualization software Scaling molecular dynamics beyond 100,000 processor cores for large-scale biophysical simulations

Reference 7

Resolution: verified fuzzy; raw_fallback, observed 2026-08-10T16:53:24.273005Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-23T06:30:58.430688+00:00.

Observation 893ce2cd-7ec8-4b64-97af-317eced219b8 · outbound

This paper cites Stevens, Fabian Grünewald, et al.

VTX: Real-time high-performance molecular structure and dynamics visualization software Stevens, Fabian Grünewald, et al

Reference 8

Resolution: verified fuzzy; raw_fallback, observed 2026-08-10T16:53:24.262902Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-23T06:30:58.430688+00:00.

Observation 6dde6901-4f55-4d6b-b1dd-e150a13fe38d · outbound

This paper cites The structure and physical properties of a packaged bacteriophage particle.

VTX: Real-time high-performance molecular structure and dynamics visualization software The structure and physical properties of a packaged bacteriophage particle

Reference 9

Resolution: verified fuzzy; raw_fallback, observed 2026-08-10T16:53:24.252739Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-23T06:30:58.430688+00:00.

Observation 9a4d7b56-a313-40d4-8158-d2b98a2aa4bf · outbound

This paper cites an unresolved cited work.

VTX: Real-time high-performance molecular structure and dynamics visualization software Unresolved cited work

Reference 10

Resolution: unresolved; raw_fallback, observed 2026-08-10T16:53:24.242362Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-23T06:30:58.430688+00:00.

Observation fbc966ce-5078-48d2-a788-c9c577d40411 · outbound

This paper cites Humphrey, A.

VTX: Real-time high-performance molecular structure and dynamics visualization software Humphrey, A

Reference 11

Resolution: verified fuzzy; raw_fallback, observed 2026-08-10T16:53:24.232018Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-23T06:30:58.430688+00:00.

Observation 3bb6ffcc-66ff-425f-849a-7a0f5750a6d7 · outbound

This paper cites an unresolved cited work.

VTX: Real-time high-performance molecular structure and dynamics visualization software Unresolved cited work

Reference 12

Resolution: unresolved; raw_fallback, observed 2026-08-10T16:53:24.220841Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-23T06:30:58.430688+00:00.

Observation 725f5ed4-67d5-41e6-8d06-f522d52c4e74 · outbound

This paper cites Chemfiles, a modern library for chemistry file reading and writing, 2021.

VTX: Real-time high-performance molecular structure and dynamics visualization software Chemfiles, a modern library for chemistry file reading and writing, 2021

Reference 13

Resolution: verified fuzzy; raw_fallback, observed 2026-08-10T16:53:24.209605Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-23T06:30:58.430688+00:00.

Observation f45b4877-9718-4b75-bab3-73e14a4adae5 · outbound

This paper cites Bagur, Nithin Shivashankar, and Vijay Natarajan.

VTX: Real-time high-performance molecular structure and dynamics visualization software Bagur, Nithin Shivashankar, and Vijay Natarajan

Reference 14

Resolution: verified fuzzy; raw_fallback, observed 2026-08-10T16:53:24.198409Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-23T06:30:58.430688+00:00.

Observation ef81c888-f17d-41fc-bf02-6ab89517d0c8 · outbound

This paper cites Hermosilla, V.

VTX: Real-time high-performance molecular structure and dynamics visualization software Hermosilla, V

Reference 15

Resolution: verified fuzzy; raw_fallback, observed 2026-08-10T16:53:24.187035Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-23T06:30:58.430688+00:00.

Observation 574c1c1d-e6ca-4524-8375-ce5a5bfb8ae1 · outbound

This paper cites Ligand excluded surface: A new type of molecular surface.

VTX: Real-time high-performance molecular structure and dynamics visualization software Ligand excluded surface: A new type of molecular surface

Reference 16

Resolution: verified fuzzy; raw_fallback, observed 2026-08-10T16:53:24.176214Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-23T06:30:58.430688+00:00.

Observation 81bcc309-b532-490c-8747-dd90f449b6db · outbound

This paper cites Lorensen and Harvey E.

VTX: Real-time high-performance molecular structure and dynamics visualization software Lorensen and Harvey E

Reference 17

Resolution: unresolved; no resolver link, observed 2026-08-10T16:53:23.662320Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation f8f668c9-eb32-4881-b7d8-d9074f23fe6f · outbound

This paper cites Finding next gen: Cryengine 2.

VTX: Real-time high-performance molecular structure and dynamics visualization software Finding next gen: Cryengine 2

Reference 18

Resolution: verified fuzzy; raw_fallback, observed 2026-08-10T16:53:24.142585Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-23T06:30:58.430688+00:00.

Observation 800c2410-50f3-4596-a058-0616648b0fd2 · outbound

This paper cites Udock, the interactive docking entertainment system.

VTX: Real-time high-performance molecular structure and dynamics visualization software Udock, the interactive docking entertainment system

Reference 19

Resolution: verified fuzzy; raw_fallback, observed 2026-08-10T16:53:24.101813Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-23T06:30:58.430688+00:00.

Observation fd54e1ae-e122-46cc-839a-6f65e5c57d4c · outbound

This paper cites Udock2: interactive real-time multi-body pro- tein–protein docking software.

VTX: Real-time high-performance molecular structure and dynamics visualization software Udock2: interactive real-time multi-body pro- tein–protein docking software

Reference 20

Resolution: verified fuzzy; raw_fallback, observed 2026-08-10T16:53:24.060003Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-23T06:30:58.430688+00:00.

Observation af50a365-c756-41dd-82ce-409e4dec2fca · outbound

This paper cites Le Muzic, L.

VTX: Real-time high-performance molecular structure and dynamics visualization software Le Muzic, L

Reference 21

Resolution: verified fuzzy; raw_fallback, observed 2026-08-10T16:53:24.001573Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-23T06:30:58.430688+00:00.

Observation de6403e7-ff96-4e74-8b5a-2395be9fbdb3 · outbound

This paper cites Berman, John Westbrook, et al.

VTX: Real-time high-performance molecular structure and dynamics visualization software Berman, John Westbrook, et al

Reference 22

Resolution: verified fuzzy; raw_fallback, observed 2026-08-10T16:53:23.990968Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-23T06:30:58.430688+00:00.

Observation 392d2559-860b-4f68-b457-b2cb56fb7eee · outbound

This paper cites Qt : cross-platform application and ui framework.

VTX: Real-time high-performance molecular structure and dynamics visualization software Qt : cross-platform application and ui framework

Reference 23

Resolution: verified fuzzy; raw_fallback, observed 2026-08-10T16:53:23.980214Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-23T06:30:58.430688+00:00.

Observation 78b55ad2-04e1-4012-bb18-cee2389bee40 · outbound

This paper cites Rettberg, Anke Treuner-Lange, Janet Iwasa, Lotte Søgaard-Andersen, and Grant J.

VTX: Real-time high-performance molecular structure and dynamics visualization software Rettberg, Anke Treuner-Lange, Janet Iwasa, Lotte Søgaard-Andersen, and Grant J

Reference 24

Resolution: verified fuzzy; raw_fallback, observed 2026-08-10T16:53:23.969919Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-23T06:30:58.430688+00:00.

Observation b1802a02-c241-4a0d-a559-0ba13276aa12 · outbound

This paper cites Structure and genome ejection mechanism of <i>staphylococcus aureus</i> phage p68.

VTX: Real-time high-performance molecular structure and dynamics visualization software Structure and genome ejection mechanism of <i>staphylococcus aureus</i> phage p68

Reference 25

Resolution: verified fuzzy; raw_fallback, observed 2026-08-10T16:53:23.957415Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-23T06:30:58.430688+00:00.

Observation 91187712-f804-41ef-ba80-48fcfa376d10 · outbound

This paper cites Axonemal structures reveal mechanoregulatory and disease mechanisms.

VTX: Real-time high-performance molecular structure and dynamics visualization software Axonemal structures reveal mechanoregulatory and disease mechanisms

Reference 26

Resolution: verified fuzzy; raw_fallback, observed 2026-08-10T16:53:23.944033Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-23T06:30:58.430688+00:00.

Observation 211944aa-82d8-4c0d-9a89-1c8d34f43797 · outbound

This paper cites Bayfield, Andrey N.

VTX: Real-time high-performance molecular structure and dynamics visualization software Bayfield, Andrey N

Reference 27

Resolution: verified fuzzy; raw_fallback, observed 2026-08-10T16:53:23.909188Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-23T06:30:58.430688+00:00.

Observation 413d1af1-e8ea-4b6f-8344-89ecf2cfc473 · outbound

This paper cites Protein structure alignment by incremental combinatorial extension (ce) of the optimal path.

VTX: Real-time high-performance molecular structure and dynamics visualization software Protein structure alignment by incremental combinatorial extension (ce) of the optimal path

Reference 28

Resolution: verified fuzzy; raw_fallback, observed 2026-08-10T16:53:23.845522Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-23T06:30:58.430688+00:00.

Observation 3dce7fda-e7d2-4617-8780-2cae1b23d754 · outbound

This paper cites Efficient gpu computation of large protein solvent-excluded surface.

VTX: Real-time high-performance molecular structure and dynamics visualization software Efficient gpu computation of large protein solvent-excluded surface

Reference 29

Resolution: verified fuzzy; raw_fallback, observed 2026-08-10T16:53:23.762904Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-23T06:30:58.430688+00:00.

Observation 60f416a9-dfb8-4dd0-87c7-d1aabb373f7f · outbound

This paper cites The need to implement FAIR principles in biomolecular simulations.

VTX: Real-time high-performance molecular structure and dynamics visualization software The need to implement FAIR principles in biomolecular simulations

Reference 2024

Resolution: verified exact; local_arxiv, observed 2026-08-10T16:53:23.745540Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-23T06:30:58.430688+00:00.

Pith citing papers

No inbound Pith citation observations are available.