A Quantum Circuit Framework for Protein Ensemble-Level Energetics | Paper Citation Record

Observation 0eeb206c-3739-4997-8a6d-4b6a72ca929e · outbound

This paper cites Dynamic personalities of proteins,.

A Quantum Circuit Framework for Protein Ensemble-Level Energetics Dynamic personalities of proteins,

Reference 1

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Observation 931fc1e6-96fc-439b-86df-aab0fafbead9 · outbound

This paper cites The role of dynamic conformational ensembles in biomolecular recognition,.

A Quantum Circuit Framework for Protein Ensemble-Level Energetics The role of dynamic conformational ensembles in biomolecular recognition,

Reference 2

Resolution: verified exact; doi, observed 2026-08-08T12:12:23.897418Z

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correction dated 2009-11-13. Source: crossref record 10.1038/nchembio1209-954d->10.1038/nchembio.232:correction, observed 2026-07-11T03:13:37.20627+00:00. This notice travels one citation hop only.

Observation eb5272bc-d112-4635-83e3-9fa2a93212dc · outbound

This paper cites Energy landscape of conformational changes for a single unmodified protein,.

A Quantum Circuit Framework for Protein Ensemble-Level Energetics Energy landscape of conformational changes for a single unmodified protein,

Reference 3

Resolution: verified exact; doi, observed 2026-08-08T12:12:23.881603Z

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Observation 2a6aa7f0-6281-4fcd-b787-0bffdc2e1603 · outbound

This paper cites Theory of protein folding: The energy landscape perspective,.

A Quantum Circuit Framework for Protein Ensemble-Level Energetics Theory of protein folding: The energy landscape perspective,

Reference 4

Resolution: verified fuzzy; raw_fallback, observed 2026-08-08T12:12:24.828615Z

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Observation cb858c71-5df1-48c3-8f36-fce016907b76 · outbound

This paper cites Navigating the folding routes,.

A Quantum Circuit Framework for Protein Ensemble-Level Energetics Navigating the folding routes,

Reference 5

Resolution: verified fuzzy; raw_fallback, observed 2026-08-08T12:12:24.810647Z

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Observation e79ec34b-58d3-4b52-9cc1-598111857af9 · outbound

This paper cites The protein-folding problem, 50 years on,.

A Quantum Circuit Framework for Protein Ensemble-Level Energetics The protein-folding problem, 50 years on,

Reference 6

Resolution: verified fuzzy; raw_fallback, observed 2026-08-08T12:12:24.793336Z

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Observation 6382fbca-3576-4b4e-ab53-4bd79e0cd0bb · outbound

This paper cites Conformational dynamics and ensembles in protein folding,.

A Quantum Circuit Framework for Protein Ensemble-Level Energetics Conformational dynamics and ensembles in protein folding,

Reference 7

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Observation a8c233a8-1000-4d29-ac6a-06fab3e356a6 · outbound

This paper cites The ensemble nature of allostery,.

A Quantum Circuit Framework for Protein Ensemble-Level Energetics The ensemble nature of allostery,

Reference 8

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Observation fbb0d1c3-2c52-454a-92f2-c8ec1f76e29c · outbound

This paper cites Principles of protein structural ensemble determination,.

A Quantum Circuit Framework for Protein Ensemble-Level Energetics Principles of protein structural ensemble determination,

Reference 9

Resolution: verified fuzzy; raw_fallback, observed 2026-08-08T12:12:24.776646Z

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Observation ac083555-5b8b-4a1b-b4de-99f940d7ff66 · outbound

This paper cites Molecular dynamics simulations of biomolecules,.

A Quantum Circuit Framework for Protein Ensemble-Level Energetics Molecular dynamics simulations of biomolecules,

Reference 10

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Observation dd8c49bd-2db7-4c8c-a814-56f4cc9fd711 · outbound

This paper cites Enhancing important fluctuations: Rare events and metadynamics from a conceptual viewpoint,.

A Quantum Circuit Framework for Protein Ensemble-Level Energetics Enhancing important fluctuations: Rare events and metadynamics from a conceptual viewpoint,

Reference 11

Resolution: unresolved; no resolver link, observed 2026-08-08T12:12:23.242195Z

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Observation 3c5c7405-13b3-4a26-8e6d-62a3dd180788 · outbound

This paper cites Bonde, P.

A Quantum Circuit Framework for Protein Ensemble-Level Energetics Bonde, P

Reference 12

Resolution: verified exact; doi, observed 2026-08-08T12:12:23.835431Z

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Observation bc35e97a-6b30-4e06-943b-56a956e73dd7 · outbound

This paper cites Sampling rare conformational transitions with a quantum computer,.

A Quantum Circuit Framework for Protein Ensemble-Level Energetics Sampling rare conformational transitions with a quantum computer,

Reference 13

Resolution: verified exact; doi, observed 2026-08-08T12:12:23.820436Z

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Observation 0a22f291-a915-4075-91ae-ce62dad972e2 · outbound

This paper cites Sampling a rare protein transition using quantum annealing,.

A Quantum Circuit Framework for Protein Ensemble-Level Energetics Sampling a rare protein transition using quantum annealing,

Reference 14

Resolution: verified exact; doi, observed 2026-08-08T12:12:23.804609Z

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Observation edcb0c5d-7f90-4925-9304-b672adf53451 · outbound

This paper cites Babbush, A.

A Quantum Circuit Framework for Protein Ensemble-Level Energetics Babbush, A

Reference 15

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Observation 4641f6f1-25c4-4e99-a6d9-2432f84fb792 · outbound

This paper cites Resource-efficient quantum algorithm for protein folding,.

A Quantum Circuit Framework for Protein Ensemble-Level Energetics Resource-efficient quantum algorithm for protein folding,

Reference 16

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Observation 5ca9685f-60d0-42a3-8c26-4d461e40a6f7 · outbound

This paper cites Quantum Algorithm for Protein Structure Prediction Using the Face-Centered Cubic Lattice.

A Quantum Circuit Framework for Protein Ensemble-Level Energetics Quantum Algorithm for Protein Structure Prediction Using the Face-Centered Cubic Lattice

Reference 17

Resolution: unresolved; no resolver link, observed 2026-08-08T12:12:23.270780Z

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Observation 914bf07c-fb3d-4d72-a4ab-ea549dd73e1a · outbound

This paper cites Finding low-energy conformations of lattice protein models by quantum annealing,.

A Quantum Circuit Framework for Protein Ensemble-Level Energetics Finding low-energy conformations of lattice protein models by quantum annealing,

Reference 18

Resolution: unresolved; no resolver link, observed 2026-08-08T12:12:23.276332Z

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Observation a2b6b0bf-3538-46a1-86fc-d454b54b5f13 · outbound

This paper cites Peptide conformational sampling using the Quantum Approximate Optimization Algorithm,.

A Quantum Circuit Framework for Protein Ensemble-Level Energetics Peptide conformational sampling using the Quantum Approximate Optimization Algorithm,

Reference 19

Resolution: unresolved; no resolver link, observed 2026-08-08T12:12:23.281268Z

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Observation 65ba461c-d33a-4015-b6ea-413b47cedb1e · outbound

This paper cites Capturing protein free energy landscape using efficient quantum encoding,.

A Quantum Circuit Framework for Protein Ensemble-Level Energetics Capturing protein free energy landscape using efficient quantum encoding,

Reference 20

Resolution: verified exact; raw_fallback, observed 2026-08-08T12:12:24.535401Z

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Observation f95d611d-a194-4e33-9def-f2c5820a9ce3 · outbound

This paper cites Quantum Sampling Architecture for Protein Structure Reconstruction on Utility-Scale Hardware.

A Quantum Circuit Framework for Protein Ensemble-Level Energetics Quantum Sampling Architecture for Protein Structure Reconstruction on Utility-Scale Hardware

Reference 21

Resolution: verified exact; local_arxiv, observed 2026-08-08T12:12:24.446183Z

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Observation b43321ba-440a-4ec8-af40-35964b8899d4 · outbound

This paper cites Hydrophobic parameters 𝜋 of amino acid side-chains from the partitioning of n-acetyl-amino acid amides,.

A Quantum Circuit Framework for Protein Ensemble-Level Energetics Hydrophobic parameters 𝜋 of amino acid side-chains from the partitioning of n-acetyl-amino acid amides,

Reference 22

Resolution: verified exact; raw_fallback, observed 2026-08-08T12:12:24.421863Z

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Observation 682257b7-53c4-4f71-b8be-f1265bc94d06 · outbound

This paper cites Maximum allowed solvent accessibilites of residues in proteins,.

A Quantum Circuit Framework for Protein Ensemble-Level Energetics Maximum allowed solvent accessibilites of residues in proteins,

Reference 23

Resolution: verified exact; doi, observed 2026-08-08T12:12:23.749706Z

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Observation 5f1b8e0f-e568-4cec-bc92-50286c2723cc · outbound

This paper cites Freesasa: An open source C library for solvent accessible surface area calculations,.

A Quantum Circuit Framework for Protein Ensemble-Level Energetics Freesasa: An open source C library for solvent accessible surface area calculations,

Reference 24

Resolution: verified fuzzy; raw_fallback, observed 2026-08-08T12:12:24.761966Z

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No event found in the named queried sources as of 2026-08-09T06:31:02.800959+00:00.

Observation d9fbca23-846d-4481-bf93-7218d8e8c7fe · outbound

This paper cites A simple method for displaying the hydropathic character of a protein,.

A Quantum Circuit Framework for Protein Ensemble-Level Energetics A simple method for displaying the hydropathic character of a protein,

Reference 25

Resolution: unresolved; no resolver link, observed 2026-08-08T12:12:23.311704Z

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Observation cff9d05c-151f-4247-8a56-25ae82b34298 · outbound

This paper cites Large amplitude elastic motions in proteins from a single-parameter, atomic analysis,.

A Quantum Circuit Framework for Protein Ensemble-Level Energetics Large amplitude elastic motions in proteins from a single-parameter, atomic analysis,

Reference 26

Resolution: unresolved; no resolver link, observed 2026-08-08T12:12:23.316493Z

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Observation c3a337bf-bdce-4ba2-9490-f30ba4dd5492 · outbound

This paper cites Gaussian dynamics of folded proteins,.

A Quantum Circuit Framework for Protein Ensemble-Level Energetics Gaussian dynamics of folded proteins,

Reference 27

Resolution: malformed identifier; raw_fallback, observed 2026-08-08T12:12:24.746435Z

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Observation f19e7ca2-c6ab-4c3c-a1a4-4decf4a5fe39 · outbound

This paper cites Anisotropy of fluctuation dynamics of proteins with an elastic network model,.

A Quantum Circuit Framework for Protein Ensemble-Level Energetics Anisotropy of fluctuation dynamics of proteins with an elastic network model,

Reference 28

Resolution: verified fuzzy; raw_fallback, observed 2026-08-08T12:12:24.729973Z

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Observation b25f1a6f-298e-418d-8636-cf877cdf2df8 · outbound

This paper cites Anisotropic network model: systematic evaluation and a new web interface,.

A Quantum Circuit Framework for Protein Ensemble-Level Energetics Anisotropic network model: systematic evaluation and a new web interface,

Reference 29

Resolution: verified exact; doi, observed 2026-08-08T12:12:23.724646Z

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No event found in the named queried sources as of 2026-08-09T06:31:02.800959+00:00.

Observation 4e4dcf41-d69e-4326-84df-748108e55aa8 · outbound

This paper cites Through bonds or contacts? mapping protein vibrational energy transfer using non-canonical amino acids,.

A Quantum Circuit Framework for Protein Ensemble-Level Energetics Through bonds or contacts? mapping protein vibrational energy transfer using non-canonical amino acids,

Reference 30

Resolution: verified exact; doi, observed 2026-08-08T12:12:23.708572Z

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No event found in the named queried sources as of 2026-08-09T06:31:02.800959+00:00.

Observation 60a40132-4b55-4570-a4ea-fb581c538a1f · outbound

This paper cites Benchmarking Error Mitigation: Artefactual Improvements in Zero-Noise Extrapolation.

A Quantum Circuit Framework for Protein Ensemble-Level Energetics Benchmarking Error Mitigation: Artefactual Improvements in Zero-Noise Extrapolation

Reference 31

Resolution: unresolved; no resolver link, observed 2026-08-08T12:12:23.343033Z

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Observation b1cf183e-04e6-4056-a2e7-650ac652ffaa · outbound

This paper cites Anisotropic energy flow and allosteric ligand binding in albumin,.

A Quantum Circuit Framework for Protein Ensemble-Level Energetics Anisotropic energy flow and allosteric ligand binding in albumin,

Reference 32

Resolution: verified exact; doi, observed 2026-08-08T12:12:23.691073Z

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No event found in the named queried sources as of 2026-08-09T06:31:02.800959+00:00.

Observation 97591468-6465-445f-be05-52cef8e80a03 · outbound

This paper cites Thermally activated coupling between protein vibrations and interfacial water dynamics revealed by terahertz spectroscopy,.

A Quantum Circuit Framework for Protein Ensemble-Level Energetics Thermally activated coupling between protein vibrations and interfacial water dynamics revealed by terahertz spectroscopy,

Reference 33

Resolution: verified fuzzy; raw_fallback, observed 2026-08-08T12:12:24.714322Z

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No event found in the named queried sources as of 2026-08-09T06:31:02.800959+00:00.

Observation 150325ce-4406-41c5-9436-a30bcda82cce · outbound

This paper cites Mdanalysisnalysis: A toolkit for the analysis of molecular dynamics simulations,.

A Quantum Circuit Framework for Protein Ensemble-Level Energetics Mdanalysisnalysis: A toolkit for the analysis of molecular dynamics simulations,

Reference 34

Resolution: unresolved; no resolver link, observed 2026-08-08T12:12:23.363520Z

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Observation 01829745-c220-49de-a16f-60dac26a0a5a · outbound

This paper cites MDAnalysis: A Python Package for the Rapid Analysis of Molecular Dynamics Simulations,.

A Quantum Circuit Framework for Protein Ensemble-Level Energetics MDAnalysis: A Python Package for the Rapid Analysis of Molecular Dynamics Simulations,

Reference 35

Resolution: unresolved; no resolver link, observed 2026-08-08T12:12:23.368927Z

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Observation 85649c3c-c729-4792-a844-ff59a93ee161 · outbound

This paper cites PennyLane: Automatic differentiation of hybrid quantum-classical computations.

A Quantum Circuit Framework for Protein Ensemble-Level Energetics PennyLane: Automatic differentiation of hybrid quantum-classical computations

Reference 36

Resolution: unresolved; no resolver link, observed 2026-08-08T12:12:23.373579Z

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Observation eb03cc37-fcbd-4f6c-b3b1-c2d9498a62dc · outbound

This paper cites Designing a 20-residue protein,.

A Quantum Circuit Framework for Protein Ensemble-Level Energetics Designing a 20-residue protein,

Reference 37

Resolution: unresolved; no resolver link, observed 2026-08-08T12:12:23.378957Z

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Observation aa96d827-132a-4ac7-a435-6d9edf6522f6 · outbound

This paper cites A kinetic model of trp-cage folding from multiple biased molecular dynamics simulations,.

A Quantum Circuit Framework for Protein Ensemble-Level Energetics A kinetic model of trp-cage folding from multiple biased molecular dynamics simulations,

Reference 38

Resolution: verified exact; doi, observed 2026-08-08T12:12:23.645325Z

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No event found in the named queried sources as of 2026-08-09T06:31:02.800959+00:00.

Observation 6ce87ab3-5325-4024-a0e2-685fb37a67a9 · outbound

This paper cites Dynamic folding pathway models of the trp-cage protein,.

A Quantum Circuit Framework for Protein Ensemble-Level Energetics Dynamic folding pathway models of the trp-cage protein,

Reference 39

Resolution: verified exact; doi, observed 2026-08-08T12:12:23.628961Z

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No event found in the named queried sources as of 2026-08-09T06:31:02.800959+00:00.

Observation e29f2bb9-ff08-4527-9b6b-5b7d596ffabd · outbound

This paper cites Influence of trp-cage on the function and stability of glp-1r agonist exenatide derivatives,.

A Quantum Circuit Framework for Protein Ensemble-Level Energetics Influence of trp-cage on the function and stability of glp-1r agonist exenatide derivatives,

Reference 40

Resolution: verified exact; doi, observed 2026-08-08T12:12:23.613560Z

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No event found in the named queried sources as of 2026-08-09T06:31:02.800959+00:00.

Observation 1ef84c3e-f15c-4fda-b88d-ebfa414dc8ac · outbound

This paper cites Adaptive sampling methods for molecular dynamics in the era of machine learning,.

A Quantum Circuit Framework for Protein Ensemble-Level Energetics Adaptive sampling methods for molecular dynamics in the era of machine learning,

Reference 41

Resolution: verified exact; doi, observed 2026-08-08T12:12:23.598315Z

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No event found in the named queried sources as of 2026-08-09T06:31:02.800959+00:00.

Observation 381be5ab-fc7a-4f4f-a5db-ea01cff5359e · outbound

This paper cites Equation of state calculations by fast computing machines,.

A Quantum Circuit Framework for Protein Ensemble-Level Energetics Equation of state calculations by fast computing machines,

Reference 42

Resolution: unresolved; no resolver link, observed 2026-08-08T12:12:23.402448Z

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Observation 871cace2-4253-4a46-b298-ef265de4cbb1 · outbound

This paper cites Replica monte carlo simulation of spin-glasses,.

A Quantum Circuit Framework for Protein Ensemble-Level Energetics Replica monte carlo simulation of spin-glasses,

Reference 43

Resolution: unresolved; no resolver link, observed 2026-08-08T12:12:23.407716Z

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Observation ab8bd4da-f67c-48cb-a142-dc9e0a81a4a3 · outbound

This paper cites Simulated tempering: A new monte carlo scheme,.

A Quantum Circuit Framework for Protein Ensemble-Level Energetics Simulated tempering: A new monte carlo scheme,

Reference 44

Resolution: unresolved; no resolver link, observed 2026-08-08T12:12:23.412608Z

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Observation 8b39fbe1-01aa-4177-bdf2-c0af2475b563 · outbound

This paper cites Chapter 3 - markov and bayesian networks: Two graphical representations of probabilistic knowledge,.

A Quantum Circuit Framework for Protein Ensemble-Level Energetics Chapter 3 - markov and bayesian networks: Two graphical representations of probabilistic knowledge,

Reference 45

Resolution: verified fuzzy; raw_fallback, observed 2026-08-08T12:12:24.697761Z

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No event found in the named queried sources as of 2026-08-09T06:31:02.800959+00:00.

Observation 549623f1-9c1c-484d-874d-df7204870281 · outbound

This paper cites Stochastic relaxation, gibbs distributions, and the bayesian restoration of images,.

A Quantum Circuit Framework for Protein Ensemble-Level Energetics Stochastic relaxation, gibbs distributions, and the bayesian restoration of images,

Reference 46

Resolution: verified fuzzy; raw_fallback, observed 2026-08-08T12:12:24.682748Z

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No event found in the named queried sources as of 2026-08-09T06:31:02.800959+00:00.

Observation d166b94f-6353-4782-8c54-eb7dd41583f1 · outbound

This paper cites Direct-coupling analysis of residue coevolution captures native contacts across many protein families,.

A Quantum Circuit Framework for Protein Ensemble-Level Energetics Direct-coupling analysis of residue coevolution captures native contacts across many protein families,

Reference 47

Resolution: unresolved; no resolver link, observed 2026-08-08T12:12:23.430854Z

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Observation 92a03a9b-21d8-4c2f-a053-ba002c26a665 · outbound

This paper cites Efficient tensor network simulation of ibm’s eagle kicked ising experiment,.

A Quantum Circuit Framework for Protein Ensemble-Level Energetics Efficient tensor network simulation of ibm’s eagle kicked ising experiment,

Reference 48

Resolution: unresolved; no resolver link, observed 2026-08-08T12:12:23.435391Z

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Observation 8fe7941c-c047-4aa8-89f1-26ff0c1cf608 · outbound

This paper cites Fast and converged classical simulations of evidence for the utility of quantum computing before fault tolerance,.

A Quantum Circuit Framework for Protein Ensemble-Level Energetics Fast and converged classical simulations of evidence for the utility of quantum computing before fault tolerance,

Reference 49

Resolution: malformed identifier; no resolver link, observed 2026-08-08T12:12:23.440119Z

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Observation 2084a72d-e0df-4012-80e9-34ae4a7df879 · outbound

This paper cites Simulating and sampling from quantum circuits with 2d tensor networks,.

A Quantum Circuit Framework for Protein Ensemble-Level Energetics Simulating and sampling from quantum circuits with 2d tensor networks,

Reference 50

Resolution: unresolved; no resolver link, observed 2026-08-08T12:12:23.445054Z

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Observation a5bea003-720f-4547-bb53-8fceda88d82c · outbound

This paper cites The fragment molecular orbital method: theoretical development, implementation in gamess, and applications,.

A Quantum Circuit Framework for Protein Ensemble-Level Energetics The fragment molecular orbital method: theoretical development, implementation in gamess, and applications,

Reference 51

Resolution: verified fuzzy; raw_fallback, observed 2026-08-08T12:12:24.666755Z

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Observation dcd5e4d9-9e9a-4e54-8a9e-ec4c45ac31b9 · outbound

This paper cites an unresolved cited work.

A Quantum Circuit Framework for Protein Ensemble-Level Energetics Unresolved cited work

Reference 52

Resolution: unresolved; no resolver link, observed 2026-08-08T12:12:23.454929Z

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Observation f6333ccc-832e-497a-b77c-f0054d678d2c · outbound

This paper cites Quantum, “RYGate,” Online API Reference to Qsikit library, 2026, accessed: 2026-07-29.

A Quantum Circuit Framework for Protein Ensemble-Level Energetics Quantum, “RYGate,” Online API Reference to Qsikit library, 2026, accessed: 2026-07-29

Reference 53

Resolution: verified fuzzy; raw_fallback, observed 2026-08-08T12:12:24.651614Z

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No event found in the named queried sources as of 2026-08-09T06:31:02.800959+00:00.

Observation 44047771-4675-4e9b-9512-e2beab413201 · outbound

This paper cites Variational gibbs state preparation on noisy intermediate-scale quantum devices,.

A Quantum Circuit Framework for Protein Ensemble-Level Energetics Variational gibbs state preparation on noisy intermediate-scale quantum devices,

Reference 54

Resolution: verified exact; doi, observed 2026-08-08T12:12:23.511410Z

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No event found in the named queried sources as of 2026-08-09T06:31:02.800959+00:00.

Observation 34e4dbbb-e361-41c8-996a-da32ba3fc117 · outbound

This paper cites Refinements of pinsker’s inequality,.

A Quantum Circuit Framework for Protein Ensemble-Level Energetics Refinements of pinsker’s inequality,

Reference 55

Resolution: unresolved; no resolver link, observed 2026-08-08T12:12:23.470163Z

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Observation 86fe3b2e-c059-4abd-bd84-571586bf761a · outbound

This paper cites Available: https://doi.org/10.1109/TPAMI.1984.4767596 22.

A Quantum Circuit Framework for Protein Ensemble-Level Energetics Available: https://doi.org/10.1109/TPAMI.1984.4767596 22

Reference 1984

Resolution: unresolved; no resolver link, observed 2026-08-08T12:12:23.426532Z

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Observation 6005351f-5ab2-4b6a-89ca-74a057336793 · outbound

This paper cites Available: https://doi.org/10.1016/j.isci.2026.115981 21.

A Quantum Circuit Framework for Protein Ensemble-Level Energetics Available: https://doi.org/10.1016/j.isci.2026.115981 21

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