Pith Number

pith:UWLAOSEB

pith:2026:UWLAOSEBDCOIRKPW6IPJ2KVYU6

not attested not anchored not stored refs resolved

LongBEL: Long-Context and Document-Consistent Biomedical Entity Linking

Adam Remaki, Christel G\'erardin, Xavier Tannier

LongBEL links biomedical mentions consistently across full documents by maintaining a memory of prior predictions.

arxiv:2605.13451 v1 · 2026-05-13 · cs.CL

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\usepackage{pith}
\pithnumber{UWLAOSEBDCOIRKPW6IPJ2KVYU6}

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Record completeness

1 Bitcoin timestamp

2 Internet Archive

3 Author claim open · sign in to claim

4 Citations open

5 Replications open

✓ Portable graph bundle live · download bundle · merged state

The bundle contains the canonical record plus signed events. A mirror can host it anywhere and recompute the same current state with the deterministic merge algorithm.

Claims

C1strongest claim

LongBEL improves over sentence-level generative baselines, with the largest gains on datasets where concepts frequently recur within documents. An ensemble of local, global, and memory-based variants achieves the best results across all benchmarks.

C2weakest assumption

That training the memory component exclusively with cross-validated predictions sufficiently reduces train-inference mismatch and prevents cascading errors without introducing new inconsistencies.

C3one line summary

LongBEL improves biomedical entity linking consistency by combining full-document context with memory of previous predictions trained via cross-validation rather than gold labels.

References

50 extracted · 50 resolved · 3 Pith anchors

[1] Journal of biomedical informatics , author = 2023 · doi:10.1016/j.jbi.2022.104252

[2] JMIR Medical Informatics , author = 2025 · doi:10.2196/68704

[3] Ryan Wong, Necati Cihan Camgoz, and Richard Bow- den 2008 · doi:10.48550/arxiv.2008.00401

[4] Névéol, Aurélie and Grouin, Cyril and Leixa, Jeremy and Rosset, Sophie and Zweigenbaum, Pierre , year =. The. Proc of

[5] Miranda-Escalada, Antonio and Gasco, Luis and Lima-López, Salvador and Farré-Maduell, Eulàlia and Estrada, Darryl and Nentidis, Anastasios and Krithara, Anastasia and Katsimpras, Georgios and Palioura

Receipt and verification

First computed	2026-05-18T02:44:41.890969Z
Builder	pith-number-builder-2026-05-17-v1
Signature	Pith Ed25519 (`pith-v1-2026-05`) · public key
Schema	pith-number/v1.0

Canonical hash

a596074881189c88a9f6f21e9d2ab8a7906a27936f913b88eade7c18287ce21d

Aliases

arxiv: 2605.13451 · arxiv_version: 2605.13451v1 · doi: 10.48550/arxiv.2605.13451 · pith_short_12: UWLAOSEBDCOI · pith_short_16: UWLAOSEBDCOIRKPW · pith_short_8: UWLAOSEB

Agent API

Resolver JSON Graph JSON Events JSON Schema Signing key

Verify this Pith Number yourself

curl -sH 'Accept: application/ld+json' https://pith.science/pith/UWLAOSEBDCOIRKPW6IPJ2KVYU6 \
  | jq -c '.canonical_record' \
  | python3 -c "import sys,json,hashlib; b=json.dumps(json.loads(sys.stdin.read()), sort_keys=True, separators=(',',':'), ensure_ascii=False).encode(); print(hashlib.sha256(b).hexdigest())"
# expect: a596074881189c88a9f6f21e9d2ab8a7906a27936f913b88eade7c18287ce21d

Canonical record JSON

{
  "metadata": {
    "abstract_canon_sha256": "31b232ee43c273a5e5b9479b1e24a651900eb7a79a0dba13b0127669b1292a52",
    "cross_cats_sorted": [],
    "license": "http://creativecommons.org/licenses/by-sa/4.0/",
    "primary_cat": "cs.CL",
    "submitted_at": "2026-05-13T12:47:21Z",
    "title_canon_sha256": "7c31702593aec5c2d5859c88f6b6dfc5ae571af36b60f65d2f6f33dd3da1bce7"
  },
  "schema_version": "1.0",
  "source": {
    "id": "2605.13451",
    "kind": "arxiv",
    "version": 1
  }
}