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Ruriko Yoshida

Identifiers

  • name variant Ruriko Yoshida 0.60 · backfill

Papers (42)

  1. Phylogenetic Tree Inference with Tropical Axial Attention q-bio.PE · 2026 · author #3
  2. Tropical Fermat-Weber Polytropes math.CO · 2024 · author #3
  3. Tropical Principal Component Analysis and its Application to Phylogenetics math.CO · 2017 · author #1
  4. Principal component analysis and the locus of the Frechet mean in the space of phylogenetic trees stat.ME · 2016 · author #4
  5. Semigroups --- A Computational Approach math.CO · 2016 · author #4
  6. Tropical Fermat-Weber points math.CO · 2016 · author #2
  7. Convexity in Tree Spaces math.MG · 2015 · author #4
  8. Stochastic safety radius on Neighbor-Joining method and Balanced Minimal Evolution on small trees q-bio.PE · 2015 · author #3
  9. Multi Loci Phylogenetic Analysis with Gene Tree Clustering q-bio.PE · 2015 · author #1
  10. Extremal Positive Semidefinite Matrices for Graphs without $K_5$ Minors math.CO · 2015 · author #3
  11. Normalizing Kernels in the Billera-Holmes-Vogtmann Treespace q-bio.PE · 2015 · author #2
  12. Distributions of topological tree metrics between a species tree and a gene tree q-bio.PE · 2015 · author #3
  13. kdetrees: Nonparametric Estimation of Phylogenetic Tree Distributions q-bio.GN · 2013 · author #5
  14. The characteristic imset polytope of Bayesian networks with ordered nodes math.CO · 2012 · author #2
  15. Markov degree of the three-state toric homogeneous Markov chain model math.ST · 2012 · author #4
  16. Semigroups and sequential importance sampling for multiway tables math.CO · 2011 · author #1
  17. Estimating the number of zero-one multi-way tables via sequential importance sampling math.ST · 2011 · author #2
  18. Semigroups and sequential importance sampling for multiway tables and beyond math.ST · 2011 · author #4
  19. Degree Bounds for a Minimal Markov Basis for the Three-State Toric Homogeneous Markov Chain Model math.CO · 2011 · author #3
  20. Statistical analysis on detecting recombination sites in DNA-beta satellites associated with the old world geminiviruses q-bio.PE · 2010 · author #2
  21. Statistical Phylogenetic Tree Analysis Using Differences of Means q-bio.PE · 2010 · author #7
  22. Optimality of the Neighbor Joining Algorithm and Faces of the Balanced Minimum Evolution Polytope q-bio.PE · 2010 · author #3
  23. Bayes estimators for phylogenetic reconstruction q-bio.PE · 2009 · author #6
  24. The Geometry of the Neighbor-Joining Algorithm for Small Trees math.CO · 2009 · author #2
  25. Markov bases and subbases for bounded contingency tables math.CO · 2009 · author #2
  26. On connectivity of fibers with positive marginals in multiple logistic regression math.ST · 2008 · author #3
  27. First steps toward the geometry of cophylogeny q-bio.PE · 2008 · author #3
  28. Parametric k-best alignment q-bio.PE · 2008 · author #2
  29. A Markov Basis for Conditional Test of Common Diagonal Effect in Quasi-Independence Model for Square Contingency Tables stat.ME · 2008 · author #3
  30. On the optimality of the neighbor-joining algorithm q-bio.QM · 2007 · author #4
  31. Markov bases for two-way subtable sum problems math.CO · 2007 · author #3
  32. Partitioning the Sample Space on Five Taxa for the Neighbor Joining Algorithm math.CO · 2007 · author #2
  33. A Generating Function for all Semi-Magic Squares and the Volume of the Birkhoff Polytope math.CO · 2007 · author #3
  34. A Novel Test for Host-Symbiont Codivergence Indicates Ancient Origin of Fungal Endophytes in Grasses q-bio.PE · 2006 · author #6
  35. Computing holes in semi-groups and its applications to transportation problems math.CO · 2006 · author #3
  36. On the Enumeration of Certain Weighted Graphs math.CO · 2006 · author #3
  37. Saturation points on faces of a rational polyhedral cone math.CO · 2006 · author #2
  38. A generalization of the integer linear infeasibility problem math.ST · 2006 · author #2
  39. Maximum likelihood estimation of phylogenetic tree and substitution rates via generalized neighbor-joining and the EM algorithm q-bio.QM · 2005 · author #2
  40. Indispensable monomials of toric ideals and Markov bases math.ST · 2005 · author #3
  41. Neighbor joining with phylogenetic diversity estimates q-bio.QM · 2005 · author #2
  42. Barvinok's Rational Functions: Algorithms and Applications to Optimization, Statistics, and Algebra math.CO · 2004 · author #1

Mentions

  • 1206.0406 #2 · backfill · confidence 0.70 Ruriko Yoshida
  • 1204.3070 #4 · backfill · confidence 0.70 Ruriko Yoshida
  • 1111.6518 #1 · backfill · confidence 0.70 Ruriko Yoshida
  • 1108.5939 #2 · backfill · confidence 0.70 Ruriko Yoshida
  • 1108.2311 #4 · backfill · confidence 0.70 Ruriko Yoshida
  • 1108.0481 #3 · backfill · confidence 0.70 Ruriko Yoshida
  • 1006.4397 #2 · backfill · confidence 0.70 Ruriko Yoshida
  • 1004.2101 #7 · backfill · confidence 0.70 Ruriko Yoshida
  • 1004.2073 #3 · backfill · confidence 0.70 Ruriko Yoshida
  • 0911.0645 #6 · backfill · confidence 0.70 Ruriko Yoshida
  • 0908.0098 #2 · backfill · confidence 0.70 Ruriko Yoshida
  • 0905.4841 #2 · backfill · confidence 0.70 Ruriko Yoshida
  • 0810.1793 #3 · backfill · confidence 0.70 Ruriko Yoshida
  • 0809.1908 #3 · backfill · confidence 0.70 Ruriko Yoshida
  • 0809.1473 #2 · backfill · confidence 0.70 Ruriko Yoshida
  • 0802.2603 #3 · backfill · confidence 0.70 Ruriko Yoshida
  • 0710.5142 #4 · backfill · confidence 0.70 Ruriko Yoshida
  • 0708.2312 #3 · backfill · confidence 0.70 Ruriko Yoshida

Frequent Coauthors