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Ilya Nemenman

Identifiers

  • name variant Ilya Nemenman 0.60 · backfill

Papers (65)

  1. Information bottleneck for learning the phase space of dynamics from high-dimensional experimental data physics.data-an · 2026 · author #4
  2. Multi-Agent Empowerment and Emergence of Complex Behavior in Groups cs.AI · 2026 · author #2
  3. DustNET: enabling machine learning and AI models of dusty plasmas physics.plasm-ph · 2026 · author #23
  4. Better Together: Cross and Joint Covariances Enhance Signal Detectability in Undersampled Data cond-mat.dis-nn · 2025 · author #3
  5. Generative random latent features models and statistics of natural images cond-mat.dis-nn · 2022 · author #2
  6. Receptor crosstalk improves concentration sensing of multiple ligands q-bio.SC · 2018 · author #7
  7. Automated, predictive, and interpretable inference of C. elegans escape dynamics q-bio.NC · 2018 · author #3
  8. Increased adaptability to rapid environmental change can more than make up for the two-fold cost of males q-bio.PE · 2018 · author #2
  9. Reverse-engineering biological networks from large data sets q-bio.MN · 2017 · author #4
  10. Luria-Delbruck, revisited: The classic experiment does not rule out Lamarckian evolution q-bio.PE · 2017 · author #5
  11. Single variant bottleneck in the early dynamics of H. influenzae bacteremia in neonatal rats questions the theory of independent action q-bio.PE · 2016 · author #3
  12. Growth of bacteria in 3-d colonies q-bio.PE · 2016 · author #6
  13. Extrinsic and intrinsic correlations in molecular information transmission q-bio.NC · 2016 · author #3
  14. Stereotypical escape behavior in Caenorhabditis elegans allows quantification of nociceptive stimuli levels q-bio.QM · 2016 · author #4
  15. Role of spatial averaging in multicellular gradient sensing q-bio.MN · 2015 · author #4
  16. Cell-cell communication enhances the capacity of cell ensembles to sense shallow gradients during morphogenesis q-bio.CB · 2015 · author #10
  17. Time to Quantify Falsifiability physics.hist-ph · 2015 · author #1
  18. Accurate sensing of multiple ligands with a single receptor q-bio.MN · 2015 · author #2
  19. Limits to the precision of gradient sensing with spatial communication and temporal integration q-bio.MN · 2015 · author #3
  20. On the sufficiency of pairwise interactions in maximum entropy models of biological networks q-bio.QM · 2015 · author #2
  21. Of fishes and birthdays: Efficient estimation of polymer configurational entropies q-bio.BM · 2015 · author #1
  22. Efficient inference of parsimonious phenomenological models of cellular dynamics using S-systems and alternating regression q-bio.QM · 2014 · author #2
  23. Automated adaptive inference of coarse-grained dynamical models in systems biology q-bio.QM · 2014 · author #2
  24. Millisecond-scale motor encoding in a cortical vocal area q-bio.NC · 2014 · author #4
  25. Director Field Model of the Primary Visual Cortex for Contour Detection q-bio.NC · 2013 · author #4
  26. Zipf's law and criticality in multivariate data without fine-tuning q-bio.NC · 2013 · author #2
  27. Predictive information in a nonequilibrium critical model cond-mat.stat-mech · 2012 · author #2
  28. Large number of receptors may reduce cellular response time variation q-bio.MN · 2012 · author #4
  29. Population-expression models of immune response q-bio.PE · 2012 · author #3
  30. Genotype to phenotype mapping and the fitness landscape of the E. coli lac promoter q-bio.PE · 2012 · author #2
  31. Gain control in molecular information processing: Lessons from neuroscience q-bio.MN · 2011 · author #1
  32. Fitness in time-dependent environments includes a geometric contribution q-bio.PE · 2011 · author #2
  33. Model Cortical Association Fields Account for the Time Course and Dependence on Target Complexity of Human Contour Perception q-bio.NC · 2011 · author #8
  34. Speeding up evolutionary search by small fitness fluctuations q-bio.PE · 2010 · author #3
  35. Information theory and adaptation q-bio.QM · 2010 · author #1
  36. Mass Conservation And Inference of Metabolic Networks from High-throughput Mass Spectrometry Data q-bio.QM · 2010 · author #3
  37. Multivariate dependence and genetic networks inference q-bio.QM · 2010 · author #4
  38. Specificity and Completion Time Distributions of Biochemical Processes cond-mat.stat-mech · 2009 · author #3
  39. Simplicity of Completion Time Distributions for Common Complex Biochemical Processes q-bio.MN · 2009 · author #3
  40. Ergodic and Nonergodic Anomalous Diffusion in Coupled Stochastic Processes cond-mat.stat-mech · 2009 · author #2
  41. Statistical properties of multistep enzyme-mediated reactions q-bio.QM · 2008 · author #5
  42. Quantifying evolvability in small biological networks q-bio.MN · 2008 · author #3
  43. Coarse-graining stochastic biochemical networks: quasi-stationary approximation and fast simulations using a stochastic path integral technique q-bio.MN · 2008 · author #3
  44. Serially-regulated biological networks fully realize a constrained set of functions q-bio.MN · 2008 · author #3
  45. Determinants of bistability in induction of the Escherichia coli lac operon q-bio.CB · 2008 · author #3
  46. Reconstruction of metabolic networks from high-throughput metabolite profiling data: in silico analysis of red blood cell metabolism q-bio.MN · 2007 · author #1
  47. Neural coding of a natural stimulus ensemble: Uncovering information at sub-millisecond resolution q-bio.NC · 2006 · author #1
  48. Optimal signal processing in small stochastic biochemical networks q-bio.MN · 2006 · author #2
  49. The Berry phase and the pump flux in stochastic chemical kinetics q-bio.QM · 2006 · author #2
  50. Genome-wide discovery of modulators of transcriptional interactions in human B lymphocytes q-bio.MN · 2005 · author #2
  51. Conditional Network Analysis Identifies Candidate Regulator Genes in Human B Cells q-bio.MN · 2004 · author #4
  52. ARACNE: An Algorithm for the Reconstruction of Gene Regulatory Networks in a Mammalian Cellular Context q-bio.MN · 2004 · author #2
  53. On The Reconstruction of Interaction Networks with Applications to Transcriptional Regulation q-bio.MN · 2004 · author #2
  54. Information theory, multivariate dependence, and genetic network inference q-bio.QM · 2004 · author #1
  55. Fluctuation-dissipation theorem and models of learning q-bio.NC · 2004 · author #1
  56. Potential and field singularity at a surface point charge math-ph · 2003 · author #3
  57. Entropy and information in neural spike trains: Progress on the sampling problem physics.data-an · 2003 · author #1
  58. Inference of entropies of discrete random variables with unknown cardinalities physics.data-an · 2002 · author #1
  59. Process Pathway Inference via Time Series Analysis physics.bio-ph · 2002 · author #2
  60. Entropy and inference, revisited physics.data-an · 2001 · author #1
  61. On the interaction of point charges in an arbitrary domain physics.class-ph · 2001 · author #2
  62. Complexity Through Nonextensivity physics.data-an · 2001 · author #2
  63. Occam factors and model-independent Bayesian learning of continuous distributions cond-mat · 2000 · author #1
  64. Information theory and learning: a physical approach physics.data-an · 2000 · author #1
  65. Predictability, complexity and learning physics.data-an · 2000 · author #2

Mentions

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Frequent Coauthors