BioMatrix unifies sequences, structures, and language for molecules and proteins inside one decoder-only foundation model via shared discrete tokens and achieves SOTA or competitive results on 77 of 80 downstream tasks.
Interleaved tool-call reasoning for protein function understanding, 2026
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BioMatrix: Towards a Comprehensive Biological Foundation Model Spanning the Modality Matrix of Sequences, Structures, and Language
BioMatrix unifies sequences, structures, and language for molecules and proteins inside one decoder-only foundation model via shared discrete tokens and achieves SOTA or competitive results on 77 of 80 downstream tasks.