Endeavor redefines PairHMM to support row-level parallelism and SIMD execution, delivering up to 2.14x CPU and 2.05x GPU speedups on sequences up to 100k basepairs without accuracy loss.
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Endeavor: Efficient PairHMM for Detection of DNA Variants in Genome-Scale Datasets
Endeavor redefines PairHMM to support row-level parallelism and SIMD execution, delivering up to 2.14x CPU and 2.05x GPU speedups on sequences up to 100k basepairs without accuracy loss.