The paper introduces Delta-complex and classifying-space persistent homology for DNA sequences and shows it clusters Ebola and bacterial genomes faster, though less accurately, than k-mer topology.
Persistent path homology of directed networks
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Topological Sequence Analysis of Genomes: Delta Complex approaches
The paper introduces Delta-complex and classifying-space persistent homology for DNA sequences and shows it clusters Ebola and bacterial genomes faster, though less accurately, than k-mer topology.