ConTact decomposes CDR design into surface fingerprint learning, contact prediction, and contact-gated sequence generation using distance-biased attention and weighted loss, reporting 7% RMSD and 10% F1 gains on CHIMERA-Bench.
Diffusion schr
7 Pith papers cite this work. Polarity classification is still indexing.
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Pith papers citing it
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2026 7verdicts
UNVERDICTED 7representative citing papers
Wasserstein Lagrangian Mechanics formalizes second-order dynamics in Wasserstein space and provides an algorithm to learn them from observed marginals without specifying the Lagrangian, outperforming gradient flows on various dynamics.
AgForce improves antigen-conditioned antibody design by using framework dropout, gated bottlenecks, hyperbolic cross attention, MDN sequence head with Potts-like coupling, annealed MCL, and antigen cycle consistency to achieve 8% better amino acid recovery and superior binding metrics on CHIMERA-BEN
EvoStruct integrates evolutionary priors from a protein language model with structural priors from an E(3)-equivariant GNN to raise amino acid recovery by 16% and diversity by 2.3x on CHIMERA-Bench while cutting perplexity 43%.
Hallucinations in diffusion models are driven by local intrinsic dimension instabilities on the manifold, which Intrinsic Quenching corrects by deflating it.
A structured diffusion bridge method achieves near fully-paired modality translation quality using alignment constraints even in unpaired or semi-paired regimes.
PPM injects parametric structural priors into generative models via a learnable mapping to improve probabilistic forecasts on non-stationary MTS data.
citing papers explorer
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ConTact: Contact-First Antibody CDR Design via Explicit Interface Reasoning
ConTact decomposes CDR design into surface fingerprint learning, contact prediction, and contact-gated sequence generation using distance-biased attention and weighted loss, reporting 7% RMSD and 10% F1 gains on CHIMERA-Bench.
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A Call to Lagrangian Action: Learning Population Mechanics from Temporal Snapshots
Wasserstein Lagrangian Mechanics formalizes second-order dynamics in Wasserstein space and provides an algorithm to learn them from observed marginals without specifying the Lagrangian, outperforming gradient flows on various dynamics.
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AgForce Enables Antigen-conditioned Generative Antibody Design
AgForce improves antigen-conditioned antibody design by using framework dropout, gated bottlenecks, hyperbolic cross attention, MDN sequence head with Potts-like coupling, annealed MCL, and antigen cycle consistency to achieve 8% better amino acid recovery and superior binding metrics on CHIMERA-BEN
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EvoStruct: Bridging Evolutionary and Structural Priors for Antibody CDR Design via Protein Language Model Adaptation
EvoStruct integrates evolutionary priors from a protein language model with structural priors from an E(3)-equivariant GNN to raise amino acid recovery by 16% and diversity by 2.3x on CHIMERA-Bench while cutting perplexity 43%.
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Local Intrinsic Dimension Unveils Hallucinations in Diffusion Models
Hallucinations in diffusion models are driven by local intrinsic dimension instabilities on the manifold, which Intrinsic Quenching corrects by deflating it.
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Structured Diffusion Bridges: Inductive Bias for Denoising Diffusion Bridges
A structured diffusion bridge method achieves near fully-paired modality translation quality using alignment constraints even in unpaired or semi-paired regimes.
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Parametric Prior Mapping Framework for Non-stationary Probabilistic Time Series Forecasting
PPM injects parametric structural priors into generative models via a learnable mapping to improve probabilistic forecasts on non-stationary MTS data.