OgBench is the first benchmark platform for GNN graph-level prediction in the n << p omics regime and finds that common GNNs often underperform MLPs and classical baselines.
Gene co-expression analysis for functional classification and gene–disease predictions.Briefings in Bioinformatics, 19(4):575–592, 01 2017
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OgBench: A Framework for Evaluating Graph Neural Networks on Omics Data
OgBench is the first benchmark platform for GNN graph-level prediction in the n << p omics regime and finds that common GNNs often underperform MLPs and classical baselines.