A new kinetic metric from spectral analysis of transition rates is applied to RNA energy landscapes, showing that ultrametricity depends on nucleotide order for fixed composition.
$p$-Adic Mathematical Physics: The First 30 Years
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Adele-valued random walks converge weakly to an adelic Lévy process in the J1 Skorokhod topology after appropriate scaling.
Numerical examination of ultrametricity in Nussinov-model RNA energy minima shows wide variation across 18 RNAs and strong sensitivity to nucleotide sequence permutation.
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Kinetic metric for basins of attraction of RNA secondary structures and analysis of the ultrametricity of the energy landscape
A new kinetic metric from spectral analysis of transition rates is applied to RNA energy landscapes, showing that ultrametricity depends on nucleotide order for fixed composition.
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A Scaling Limit of Random Walks in the Rational Adeles
Adele-valued random walks converge weakly to an adelic Lévy process in the J1 Skorokhod topology after appropriate scaling.
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Ultrametricity of Energy Minimum Configurations of RNA Secondary Structures in the Nussinov Model
Numerical examination of ultrametricity in Nussinov-model RNA energy minima shows wide variation across 18 RNAs and strong sensitivity to nucleotide sequence permutation.