A-CODE presents a fully atomic one-stage multimodal diffusion model for protein co-design that claims superior unconditional generation performance over prior one- and two-stage models plus a tenfold success-rate gain on hard binder-design tasks.
Odesign: A world model for biomolecular interaction design
3 Pith papers cite this work. Polarity classification is still indexing.
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BioMatrix unifies sequences, structures, and language for molecules and proteins inside one decoder-only foundation model via shared discrete tokens and achieves SOTA or competitive results on 77 of 80 downstream tasks.
ProtDBench is a new evaluation benchmark that standardizes protein binder design assessment, reveals verifier-dependent bias in structure predictors, and compares generative methods under fixed 24-hour and diversity-aware criteria.
citing papers explorer
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A-CODE: Fully Atomic Protein Co-Design with Unified Multimodal Diffusion
A-CODE presents a fully atomic one-stage multimodal diffusion model for protein co-design that claims superior unconditional generation performance over prior one- and two-stage models plus a tenfold success-rate gain on hard binder-design tasks.
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BioMatrix: Towards a Comprehensive Biological Foundation Model Spanning the Modality Matrix of Sequences, Structures, and Language
BioMatrix unifies sequences, structures, and language for molecules and proteins inside one decoder-only foundation model via shared discrete tokens and achieves SOTA or competitive results on 77 of 80 downstream tasks.
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ProtDBench: A Unified Benchmark of Protein Binder Design and Evaluation
ProtDBench is a new evaluation benchmark that standardizes protein binder design assessment, reveals verifier-dependent bias in structure predictors, and compares generative methods under fixed 24-hour and diversity-aware criteria.