ProtoCol applies ColBERT-style late interaction on per-residue protein embeddings to improve remote homolog retrieval, outperforming pooled and alignment baselines on SCOPe and Pfam benchmarks.
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PROTOCOL: Late Interaction Retrieval for Protein Homolog Search
ProtoCol applies ColBERT-style late interaction on per-residue protein embeddings to improve remote homolog retrieval, outperforming pooled and alignment baselines on SCOPe and Pfam benchmarks.