ViroBench benchmarks 66 nucleotide foundation models on viral tasks, finding weak extrapolation under shifts, decoupling of likelihood from functional validity in generation, and greater value from taxonomic diversity than model scale.
Genbench: A benchmarking suite for systematic evaluation of genomic foundation models.arXiv preprint arXiv:2406.01627, 2024c
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Event-centric waveform foundation models are learned via self-supervised consistency on latent event structures and interactions, yielding improved performance and label efficiency over sequence-based baselines on physiological tasks.
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ViroBench: Benchmarking Nucleotide Foundation Models on Viral Genomics Tasks
ViroBench benchmarks 66 nucleotide foundation models on viral tasks, finding weak extrapolation under shifts, decoupling of likelihood from functional validity in generation, and greater value from taxonomic diversity than model scale.
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Event Fields: Learning Latent Event Structure for Waveform Foundation Models
Event-centric waveform foundation models are learned via self-supervised consistency on latent event structures and interactions, yielding improved performance and label efficiency over sequence-based baselines on physiological tasks.