RAM augments relational graph models with attribute-semantic retrieval via random-walk documents and two contrastive augmentations (ATRA, ETRA) to achieve state-of-the-art results on five real-world databases.
Kipf, Peter Bloem, Rianne van den Berg, Ivan Titov, and Max Welling
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GNNs with ontology-derived semantic loss create hierarchy-aware box embeddings of a yeast knowledge graph that raise double-knockout growth prediction R² to 0.377 and generalize to triple knockouts while identifying a validated trait association.
Entity representations learned from text via link prediction generalize to unseen entities and transfer to classification and retrieval with reported gains of 22% MRR, 16% accuracy, and 8.8% NDCG@10.
Empirical comparison shows gradient-based explanations for GNN node similarities are actionable, consistent, and retain effects when sparsified, unlike mutual information explanations.