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Mathews, and Max Ward

Eliot Courtney, Amitava Datta, David H · 2025 · Journal of Molecular Biology · DOI 10.1016/j.jmb.2024.168819 · arXiv 2024.168819

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Compiling Bioinformatics Recurrences

cs.PL · 2026-07-07 · conditional · novelty 7.0

FILTR compiles bioinformatics DP recurrences with separable scheduling and pruning directives into C++ code achieving 0.95x–30x speedup over hand-optimized libraries.

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  • Compiling Bioinformatics Recurrences cs.PL · 2026-07-07 · conditional · none · ref 6

    FILTR compiles bioinformatics DP recurrences with separable scheduling and pruning directives into C++ code achieving 0.95x–30x speedup over hand-optimized libraries.