pith. sign in

arxiv: 1104.5090 · v2 · pith:ZKV4YTWLnew · submitted 2011-04-27 · 🌊 nlin.CG · math.DS· physics.bio-ph· q-bio.SC

Bidirectional transport and pulsing states in a multi-lane ASEP model

classification 🌊 nlin.CG math.DSphysics.bio-phq-bio.SC
keywords modelparticlestransportlanebidirectionalchangesexperimentsmotion
0
0 comments X
read the original abstract

In this paper, we introduce an ASEP-like transport model for bidirectional motion of particles on a multi-lane lattice. The model is motivated by {\em in vivo} experiments on organelle motility along a microtubule (MT), consisting of thirteen protofilaments, where particles are propelled by molecular motors (dynein and kinesin). In the model, organelles (particles) can switch directions of motion due to "tug-of-war" events between counteracting motors. Collisions of particles on the same lane can be cleared by switching to adjacent protofilaments (lane changes). We analyze transport properties of the model with no-flux boundary conditions at one end of a MT ("plus-end" or tip). We show that the ability of lane changes can affect the transport efficiency and the particle-direction change rate obtained from experiments is close to optimal in order to achieve efficient motor and organelle transport in a living cell. In particular, we find a nonlinear scaling of the mean {\em tip size} (the number of particles accumulated at the tip) with injection rate and an associated phase transition leading to {\em pulsing states} characterized by periodic filling and emptying of the system.

This paper has not been read by Pith yet.

discussion (0)

Sign in with ORCID, Apple, or X to comment. Anyone can read and Pith papers without signing in.