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arxiv: 1408.0255 · v1 · pith:LL6FYZKHnew · submitted 2014-08-01 · ⚛️ physics.bio-ph · q-bio.BM

Efficient inference of protein structural ensembles

classification ⚛️ physics.bio-ph q-bio.BM
keywords ensemblemodelproteinproteinsstructuralaccuratelyadoptadopts
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It is becoming clear that traditional, single-structure models of proteins are insufficient for understanding their biological function. Here, we outline one method for inferring, from experiments, not only the most common structure a protein adopts (native state), but the entire ensemble of conformations the system can adopt. Such ensemble mod- els are necessary to understand intrinsically disordered proteins, enzyme catalysis, and signaling. We suggest that the most difficult aspect of generating such a model will be finding a small set of configurations to accurately model structural heterogeneity and present one way to overcome this challenge.

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