pith. sign in

arxiv: 1704.06144 · v1 · pith:IHMUO6OYnew · submitted 2017-04-20 · ⚛️ physics.comp-ph

Sampling molecular conformers in solution with quantum mechanical accuracy at a nearly molecular mechanics cost

classification ⚛️ physics.comp-ph
keywords accuracyconformersmolecularsolutionachievedcostmechanicalnearly
0
0 comments X
read the original abstract

We introduce a method to evaluate the relative populations of different conformers of molecular species in solution, aiming at quantum mechanical accuracy, while keeping the computational cost at a nearly molecular-mechanics level. This goal is achieved by combining long classical molecular-dynamics simulations to sample the free-energy landscape of the system, advanced clustering techniques to identify the most relevant conformers, and thermodynamic perturbation theory to correct the resulting populations, using quantum-mechanical energies from density-functional theory. A quantitative criterion for assessing the accuracy thus achieved is proposed. The resulting methodology is demonstrated in the specific case of cyanin (cyanidin-3-glucoside) in water solution.

This paper has not been read by Pith yet.

discussion (0)

Sign in with ORCID, Apple, or X to comment. Anyone can read and Pith papers without signing in.