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Accuracy versus Predominance: Reassessing the validity of the quasi-steady-state approximation

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arxiv 2501.06406 v2 pith:6LGQGQD6 submitted 2025-01-11 physics.chem-ph math.DSq-bio.QM

classification physics.chem-phmath.DSq-bio.QM
keywords quasi-steady-stateapproximationstandardaccuracyvaliditypredominanceratiobiochemical
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abstract

The application of the standard quasi-steady-state approximation to the Michaelis--Menten reaction mechanism is a textbook example of biochemical model reduction, derived using singular perturbation theory. However, determining the specific biochemical conditions that dictate the validity of the standard quasi-steady-state approximation remains a challenging endeavor. Emerging research suggests that the accuracy of the standard quasi-steady-state approximation improves as the ratio of the initial enzyme concentration, $e_0$, to the Michaelis constant, $K_M$, decreases. In this work, we examine this ratio and its implications for the accuracy and validity of the standard quasi-steady-state approximation as compared to other quasi-steady-state reductions in its proximity. Using standard tools from the analysis of ordinary differential equations, we show that while $e_0/K_M$ provides an indication of the standard quasi-steady-state approximation's asymptotic accuracy, the standard quasi-steady-state approximation's predominance relies on a small ratio of $e_0$ to the Van Slyke-Cullen constant, $K$. Here, we define the predominance of a quasi-steady-state reduction when it offers the highest approximation accuracy among other well-known reductions with overlapping validity conditions. We conclude that the magnitude of $e_0/K$ offers the most accurate measure of the validity of the standard quasi-steady-state approximation.

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