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arxiv: 2601.17609 · v2 · submitted 2026-01-24 · 💻 cs.CL

What Language Models Know But Don't Say: Non-Generative Prior Extraction for Generalization

Pith reviewed 2026-05-16 10:54 UTC · model grok-4.3

classification 💻 cs.CL
keywords LoIDlogit-informed distributionsprior extractionBayesian logistic regressionout-of-distribution generalizationlanguage model knowledgetabular data
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The pith

LoID extracts informative priors from LLMs by probing token logits on opposing sentences to boost Bayesian logistic regression on OOD data.

A machine-rendered reading of the paper's core claim, the machinery that carries it, and where it could break.

The paper proposes LoID, a deterministic method for extracting prior distributions from large language models for use in Bayesian logistic regression. It accesses the model's token-level predictions on carefully constructed positive and negative sentences about each feature to determine the strength and reliability of its beliefs. This avoids reliance on generated text and provides informative priors when labeled data is scarce or biased. The method is tested on ten real-world tabular datasets under out-of-distribution conditions and shows substantial gains over baselines.

Core claim

LoID extracts informative prior distributions by measuring how consistently an LLM favors one semantic direction over another in token predictions across varied phrasings, enabling Bayesian logistic regression to recover up to 59% of the performance gap to an oracle model trained on full data while outperforming AutoElicit and LLMProcesses on 8 out of 10 datasets.

What carries the argument

LoID (Logit-Informed Distributions), which derives prior parameters from the consistency of LLM logit preferences for positive versus negative feature impact statements.

If this is right

  • Provides a reproducible way to integrate LLM knowledge into Bayesian inference without text generation.
  • Outperforms methods that rely on LLM-generated text or in-context numerical predictions on most datasets.
  • Recovers significant performance under covariate shift in small training sets.
  • Applicable to domains like medicine and finance where data is costly.

Where Pith is reading between the lines

These are editorial extensions of the paper, not claims the author makes directly.

  • LoID's non-generative approach might generalize to extracting beliefs for other probabilistic models.
  • It could be combined with other elicitation techniques for more robust priors.
  • Testing on datasets where LLM knowledge is known to be inaccurate would reveal limits.

Load-bearing premise

The assumption that an LLM's token-level logit preferences on hand-crafted positive/negative sentences reliably encode accurate, domain-appropriate prior beliefs about each feature's causal direction and strength.

What would settle it

A counterexample would be a dataset where Bayesian logistic regression using LoID priors achieves lower AUC than the same model with uninformative priors in the synthetic OOD setting.

Figures

Figures reproduced from arXiv: 2601.17609 by Mohammad M. Ghassemi, Sara Rezaeimanesh.

Figure 1
Figure 1. Figure 1: LoID Pipeline: To extract informative priors, LoID uses multiple sentence templates for each feature and [PITH_FULL_IMAGE:figures/full_fig_p005_1.png] view at source ↗
Figure 2
Figure 2. Figure 2: Hyperparameter ablation results demonstrating that prior uncertainty (beta) is the critical factor for [PITH_FULL_IMAGE:figures/full_fig_p011_2.png] view at source ↗
read the original abstract

In domains like medicine and finance, large-scale labeled data is costly and often unavailable, leading to models trained on small datasets that struggle to generalize to real-world populations. Large language models contain extensive knowledge from years of research across these domains. We propose LoID (Logit-Informed Distributions), a deterministic method for extracting informative prior distributions for Bayesian logistic regression by directly accessing their token-level predictions. Rather than relying on generated text, we probe the model's confidence in opposing semantic directions (positive vs. negative impact) through carefully constructed sentences. By measuring how consistently the LLM favors one direction across diverse phrasings, we extract the strength and reliability of the model's belief about each feature's influence. We evaluate LoID on ten real-world tabular datasets under synthetic out-of-distribution (OOD) settings characterized by covariate shift, where the training data represents only a subset of the population. We compare our approach against (1) standard uninformative priors, (2) AutoElicit, a recent method that prompts LLMs to generate priors via text completions, (3) LLMProcesses, a method that uses LLMs to generate numerical predictions through in-context learning and (4) an oracle-style upper bound derived from fitting logistic regression on the full dataset. We assess performance using Area Under the Curve (AUC). Across datasets, LoID significantly improves performance over logistic regression trained on OOD data, recovering up to \textbf{59\%} of the performance gap relative to the oracle model. LoID outperforms AutoElicit and LLMProcessesc on 8 out of 10 datasets, while providing a reproducible and computationally efficient mechanism for integrating LLM knowledge into Bayesian inference.

Editorial analysis

A structured set of objections, weighed in public.

Desk editor's note, referee report, simulated authors' rebuttal, and a circularity audit. Tearing a paper down is the easy half of reading it; the pith above is the substance, this is the friction.

Referee Report

3 major / 2 minor

Summary. The manuscript introduces LoID (Logit-Informed Distributions), a deterministic method to extract prior distributions for Bayesian logistic regression from LLMs by measuring consistency of token-level logit differences on hand-crafted positive versus negative sentences asserting each feature's impact. It evaluates the approach on ten real-world tabular datasets under synthetic covariate-shift OOD regimes, claiming AUC gains that recover up to 59% of the gap to an oracle logistic regression fit on the full data and outperform AutoElicit and LLMProcesses on 8/10 datasets.

Significance. If the logit-derived priors prove to be directionally accurate and domain-appropriate rather than reflections of training-data correlations, the method would supply a reproducible, non-generative route for injecting LLM knowledge into Bayesian models, improving generalization in low-data regimes such as medicine and finance while remaining computationally lighter than generative elicitation baselines.

major comments (3)
  1. [§3 (Method)] §3 (Method): the central extraction procedure relies on 'carefully constructed sentences' whose templates, number of phrasings, and exact positive/negative wording are not supplied; without these, it is impossible to assess whether the reported logit consistency encodes causal feature effects or merely linguistic or correlational artifacts.
  2. [§4 (Experiments)] §4 (Experiments): the abstract and results claim 'significant' AUC improvements and up to 59% gap recovery, yet no statistical significance tests, standard errors, or ablation on probe phrasing are reported; this leaves the performance claims unverifiable and the comparison to AutoElicit/LLMProcesses on 8/10 datasets difficult to interpret.
  3. [§4.2 (Results)] §4.2 (Results): no check is performed that the sign or magnitude of the extracted priors matches known causal directions in any of the ten domains; under covariate shift this omission is load-bearing, because LLM logits may encode spurious associations that would mis-specify the Bayesian posterior rather than improve it.
minor comments (2)
  1. [Abstract] Abstract: 'LLMProcessesc' is a typographical error and should read 'LLMProcesses'.
  2. [Abstract] Abstract: the description of the synthetic OOD covariate-shift construction is absent; a brief statement of how the training subset is selected would aid reproducibility.

Simulated Author's Rebuttal

3 responses · 0 unresolved

We thank the referee for the constructive and detailed feedback, which has helped us identify areas to strengthen the manuscript. We address each major comment below and describe the planned revisions.

read point-by-point responses
  1. Referee: [§3 (Method)] §3 (Method): the central extraction procedure relies on 'carefully constructed sentences' whose templates, number of phrasings, and exact positive/negative wording are not supplied; without these, it is impossible to assess whether the reported logit consistency encodes causal feature effects or merely linguistic or correlational artifacts.

    Authors: We agree that the exact templates and phrasings are necessary for full reproducibility and to evaluate potential artifacts. In the revised manuscript we will add a dedicated appendix containing all sentence templates, the number of phrasings per feature (typically 5–10), and representative positive/negative examples for each of the ten datasets. This will allow readers to inspect the construction and judge whether the logit differences reflect substantive feature effects. revision: yes

  2. Referee: [§4 (Experiments)] §4 (Experiments): the abstract and results claim 'significant' AUC improvements and up to 59% gap recovery, yet no statistical significance tests, standard errors, or ablation on probe phrasing are reported; this leaves the performance claims unverifiable and the comparison to AutoElicit/LLMProcesses on 8/10 datasets difficult to interpret.

    Authors: We accept this criticism. The revised experiments section will report bootstrap standard errors for all AUC values and will include paired statistical tests (t-tests or Wilcoxon signed-rank) to assess the significance of improvements over baselines. We will also add an ablation study that varies the number of probe phrasings and wording diversity, demonstrating that the reported gains remain stable under these changes. revision: yes

  3. Referee: [§4.2 (Results)] §4.2 (Results): no check is performed that the sign or magnitude of the extracted priors matches known causal directions in any of the ten domains; under covariate shift this omission is load-bearing, because LLM logits may encode spurious associations that would mis-specify the Bayesian posterior rather than improve it.

    Authors: We acknowledge the importance of this validation. Because obtaining authoritative causal ground truth for every feature across ten heterogeneous domains would require substantial external expertise not available to the authors, we cannot perform a comprehensive check. In the revision we will add a limitations subsection that (a) discusses the risk of spurious correlations, (b) reports sign agreement for a small number of features where public domain knowledge exists, and (c) notes that the observed OOD performance gains provide indirect support for the priors’ utility while leaving direct causal verification to future domain-specific studies. revision: partial

Circularity Check

0 steps flagged

No significant circularity; priors extracted externally from LLM logits

full rationale

The LoID method constructs priors for Bayesian logistic regression by measuring token-level logit differences on hand-crafted positive/negative feature sentences. This extraction step operates on an external LLM and is independent of the target dataset's training data or labels. Performance claims (AUC gains, gap recovery) are evaluated empirically against uninformative priors, AutoElicit, LLMProcesses, and an oracle on held-out OOD data under covariate shift. No equations or steps reduce the central result to a fit on the same data, a self-citation chain, or a renaming of known patterns. The derivation remains self-contained against external benchmarks.

Axiom & Free-Parameter Ledger

0 free parameters · 1 axioms · 0 invented entities

The method rests on the domain assumption that LLM token logits on constructed sentences encode useful prior knowledge; no free parameters or invented entities are described in the abstract.

axioms (1)
  • domain assumption LLM token-level predictions on opposing semantic sentences encode reliable prior beliefs about feature influence
    This is the central premise that allows logit scores to be turned into prior distributions.

pith-pipeline@v0.9.0 · 5608 in / 1224 out tokens · 34529 ms · 2026-05-16T10:54:26.476044+00:00 · methodology

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Reference graph

Works this paper leans on

25 extracted references · 25 canonical work pages

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    Diabetes(Islam et al., 2020): Predicts the likelihood of diabetes based on self-reported symptoms and demographic information. Fea- tures include age, gender, polyuria, polydip- sia, sudden weight loss, weakness, polypha- gia, genital thrush, visual blurring, itching, irritability, delayed healing, partial paresis, muscle stiffness, alopecia, and obesity....

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    The binary classification task identifies individuals with high likelihood of heart disease

    Heart Disease(Janosi et al., 1988): Predicts heart disease using clinical and demographic attributes such as age, sex, resting blood pres- sure, cholesterol level, fasting blood sugar, maximum heart rate, exercise-induced angina, ST depression (oldpeak), chest pain type, rest- ing ECG results, and ST slope. The binary classification task identifies indivi...

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    Adult Income(Becker and Kohavi, 1996a): Predicts whether an individual’s annual in- come exceeds $50K based on 1994 U.S. Cen- sus data. Features include age, education level, marital status, occupation, relationship sta- tus, workclass, sex, native country, capital gain/loss, and hours worked per week. The binary classification task uses demographic and e...

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    King-Pawn chess endgame positions

    Chess Endgame(Shapiro, 1983): Predicts game outcomes in King-Rook vs. King-Pawn chess endgame positions. Features encode piece positions using strength rankings, file co- ordinates, and rank coordinates for white and black pieces. The binary classification task determines winning positions in this chess endgame with 44,820 board configurations

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    Indian Liver Patient(Ramana and Venkateswarlu, 2012): Predicts whether a patient has liver disease using clinical mea- surements collected from northeast Andhra Pradesh, India. Features include age, gender, total bilirubin, direct bilirubin, alkaline phos- phatase, alanine aminotransferase (SGPT), aspartate aminotransferase (SGOT), total proteins, albumin...

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    Features include temperature (Celsius), relative humidity (%), light (Lux), CO2 concentration (ppm), humidity ratio (kg water-vapor/kg-air), and timestamp informa- tion

    Occupancy Detection(Candanedo, 2016b): Predicts room occupancy status from envi- ronmental sensor measurements in an of- fice setting. Features include temperature (Celsius), relative humidity (%), light (Lux), CO2 concentration (ppm), humidity ratio (kg water-vapor/kg-air), and timestamp informa- tion. The binary classification task detects oc- cupancy u...

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    Pima Indians Diabetes(Smith et al., 1988): Predicts the onset of diabetes within five years in females of Pima Indian heritage over age

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    The binary classification task uses medical measurements from 768 women from a population near Phoenix, Arizona with high diabetes incidence rates

    Features include number of pregnancies, glucose level, blood pressure, skin thickness, insulin level, BMI, diabetes pedigree function, and age. The binary classification task uses medical measurements from 768 women from a population near Phoenix, Arizona with high diabetes incidence rates. A.4.2 OOD Splits We construct out-of-distribution (OOD) train spl...

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    moderate_20_80, training on the bottom 20%; 4.tail_0_50, training on the 0–25% range; 5.tail_50_100, training on the 50–75% range. For each split, we designate a different feature as the shift variable (cycling through available fea- tures), compute the corresponding quantile thresh- olds, and construct train–test masks while enforc- ing a minimum of 50 s...

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    This absence of gradient-based regularization toward zero can lead to poor MCMC sampling behavior and overfitting

    Lack of soft regularization:Uniform distri- butions do not encode the reasonable prior belief that smaller coefficient magnitudes are more plausible than larger ones. This absence of gradient-based regularization toward zero can lead to poor MCMC sampling behavior and overfitting

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    Incompatibility with MCMC:The flat den- sity of Uniform priors provides no gradient information to guide sampling algorithms, re- sulting in inefficient exploration and conver- gence issues, particularly visible in the Occu- pancy dataset collapse

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    Uniform priors violate this structure, treating β= 0.1 and β= 4.9 as equally plausible a prior

    Prior-likelihood mismatch:For logistic re- gression, coefficients naturally follow a scale where values near zero are common and ex- treme values are rare. Uniform priors violate this structure, treating β= 0.1 and β= 4.9 as equally plausible a prior. A.7 Computational Resources

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    7985WX CPUwith64 cores (128 threads) at up to5.37 GHz, and256 GB of RAM

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    All inference was performed using both GPUs in parallel

    Model Inference:We usedGemma-2-27Bas our main LLM. All inference was performed using both GPUs in parallel. Each feature prompt required about50–70 secondsto com- plete across 10 paraphrases, leading to approx- imately60 seconds * #featuresper dataset

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    Preprocessing:Minimal preprocessing was required and was handled efficiently on a sin- gle CPU

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    Each call took2–3 secondsand used one CPU thread

    Additional Resources:Exploratory analyses, including feature selection, were performed usingGPT-4o via OpenRouter. Each call took2–3 secondsand used one CPU thread