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arxiv: cond-mat/0205631 · v1 · submitted 2002-05-29 · ❄️ cond-mat.soft · q-bio

Topological complexity, contact order and protein folding rates

classification ❄️ cond-mat.soft q-bio
keywords foldingcontactorderacidsaminocorrelationproteinproteins
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Monte Carlo simulations of protein folding show the emergence of a strong correlation between the relative contact order parameter, CO, and the folding time, t, of two-state folding proteins for longer chains with number of amino acids, N>=54, and higher contact order, CO > 0.17. The correlation is particularly strong for N=80 corresponding to slow and more complex folding kinetics. These results are qualitatively compatible with experimental data where a general trend towards increasing t with CO is indeed observed in a set of proteins with chain length ranging from 41 to 154 amino acids.

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