pith. sign in

arxiv: cond-mat/0308360 · v1 · submitted 2003-08-18 · ❄️ cond-mat.stat-mech · q-bio.QM

Generalized-Ensemble Algorithms: Enhanced Sampling Techniques for Monte Carlo and Molecular Dynamics Simulations

classification ❄️ cond-mat.stat-mech q-bio.QM
keywords algorithmsgeneralized-ensemblecarlodynamicsensemblemethodsmolecularmonte
0
0 comments X
read the original abstract

In complex systems with many degrees of freedom such as spin glass and biomolecular systems, conventional simulations in canonical ensemble suffer from the quasi-ergodicity problem. A simulation in generalized ensemble performs a random walk in potential energy space and overcomes this difficulty. From only one simulation run, one can obtain canonical-ensemble averages of physical quantities as functions of temperature by the single-histogram and/or multiple-histogram reweighting techniques. In this article we review the generalized-ensemble algorithms. Three well-known methods, namely, multicanonical algorithm, simulated tempering, and replica-exchange method, are described first. Both Monte Carlo and molecular dynamics versions of the algorithms are given. We then present five new generalized-ensemble algorithms which are extensions of the above methods.

This paper has not been read by Pith yet.

discussion (0)

Sign in with ORCID, Apple, or X to comment. Anyone can read and Pith papers without signing in.