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arxiv: cond-mat/0412287 · v2 · submitted 2004-12-10 · ❄️ cond-mat.soft · cond-mat.other

Speeding up a single-molecule DNA motor with a simple catalyst

classification ❄️ cond-mat.soft cond-mat.other
keywords motorcatalystreactionrestorationstrandcatalyticcontrolcycle
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We demonstrate a catalytic control method for speeding up the single-molecule DNA motor introduced by Li and Tan [Nano Lett. {\bf 2}, 315 (2002)]. A key rate-limiting barrier in the reaction part of the cycle is the tendency for the second fuel strand $B$ to fold into the chair-like configuration of the original motor strand $M$. This seriously impedes the restoration reaction. We have designed a catalytic strand to inhibit the folding of $B$. Introduction of the catalyst speeds up the restoration reaction by roughly a factor of 2. The catalyst shows robust behavior for more than one cycle. The experimental data can be understood with a model with intermediate products. This technique provides dynamic control of the restoration rate of the motor without affecting the straightening rate.

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