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arxiv: cond-mat/0702160 · v1 · submitted 2007-02-07 · ❄️ cond-mat.soft

Metastable tight knots in a worm-like polymer

classification ❄️ cond-mat.soft
keywords knotchainentropyestimateexperimentalmetastablepolymerwill
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Based on an estimate of the knot entropy of a worm-like chain we predict that the interplay of bending energy and confinement entropy will result in a compact metastable configuration of the knot that will diffuse, without spreading, along the contour of the semi-flexible polymer until it reaches one of the chain ends. Our estimate of the size of the knot as a function of its topological invariant (ideal aspect ratio) agrees with recent experimental results of knotted dsDNA. Further experimental tests of our ideas are proposed.

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