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arxiv: cond-mat/9710028 · v1 · submitted 1997-10-02 · ❄️ cond-mat.soft · q-bio

Highly Designable Protein Structures and Inter Monomer Interactions

classification ❄️ cond-mat.soft q-bio
keywords designabilityhighlypotentialproteinstructuresbecomescalculatedcertain
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By exact computer enumeration and combinatorial methods, we have calculated the designability of proteins in a simple lattice H-P model for the protein folding problem. We show that if the strength of the non-additive part of the interaction potential becomes larger than a critical value, the degree of designability of structures will depend on the parameters of potential. We also show that the existence of a unique ground state is highly sensitive to mutation in certain sites.

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