pith. sign in

arxiv: physics/0108053 · v1 · submitted 2001-08-28 · ⚛️ physics.bio-ph · q-bio

Multifractal characterisation of length sequences of coding and noncoding segments in a complete genome

classification ⚛️ physics.bio-ph q-bio
keywords sequenceslengthnoncodingcodingcurvesbacteriaalmostcomplete
0
0 comments X
read the original abstract

The coding and noncoding length sequences constructed from a complete genome are characterised by multifractal analysis. The dimension spectrum $D_{q}$ and its derivative, the 'analogous' specific heat $C_{q}$, are calculated for the coding and noncoding length sequences of bacteria, where $q$ is the moment order of the partition sum of the sequences. From the shape of the $% D_{q}$ and $C_{q}$ curves, it is seen that there exists a clear difference between the coding/noncoding length sequences of all organisms considered and a completely random sequence. The complexity of noncoding length sequences is higher than that of coding length sequences for bacteria. Almost all $D_{q}$ curves for coding length sequences are flat, so their multifractality is small whereas almost all $D_{q}$ curves for noncoding length sequences are multifractal-like. We propose to characterise the bacteria according to the types of the $C_{q}$ curves of their noncoding length sequences.

This paper has not been read by Pith yet.

discussion (0)

Sign in with ORCID, Apple, or X to comment. Anyone can read and Pith papers without signing in.