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arxiv: 0810.2232 · v1 · submitted 2008-10-13 · ❄️ cond-mat.stat-mech

Non-Markovian fluctuations in Markovian models of protein dynamics

classification ❄️ cond-mat.stat-mech
keywords dynamicsfluctuationsnon-markovianmarkovianmodesnormalproteinable
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Recent experiments using fluorescence spectroscopy have been able to probe the dynamics of conformational fluctuations in proteins. The fluctuations are Gaussian but do not decay exponentially, and are therefore, non-Markovian. We present a theory where non-Markovian fluctuation dynamics emerges naturally from the superposition of the Markovian fluctuations of the normal modes of the protein. A Rouse-like dynamics of the normal modes provides very good agreement to the experimentally measured correlation functions. We provide simple scaling arguments rationalising our results.

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