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Strong Collapse for Persistence
Computational Geometry · Submitted 28 Sep 2018
abstract compiled · 2026-09-23 · no language-model review
The authors' main claim As a result and as demonstrated by numerous experiments on publicly available data sets, our approach is extremely fast and memory efficient in practice.
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The abstract, sentence by sentence
We introduce a fast and memory efficient approach to compute the persistent homology (PH) of a sequence of simplicial complexes. The basic idea is to simplify the complexes of the input sequence by using strong collapses, as introduced by J. Barmak and E. Miniam [DCG (2012)], and to compute the PH of an induced sequence of reduced simplicial complexes that has the same PH as the initial one. Our approach has several salient features that distinguishes it from previous work. It is not limited to filtrations (i.e. sequences of nested simplicial subcomplexes) but works for other types of sequences like towers and zigzags. To strong collapse a simplicial complex, we only need to store the maximal simplices of the complex, not the full set of all its simplices, which saves a lot of space and time. Moreover, the complexes in the sequence can be strong collapsed independently and in parallel. Finally, we can compromize between precision and time by choosing the number of simplicial complexes of the sequence we strong collapse. As a result and as demonstrated by numerous experiments on publicly available data sets, our approach is extremely fast and memory efficient in practice.
background contribution method result interpretation main claim
| # | sentence | role | the authors' own work | states the main conclusion | strength |
|---|---|---|---|---|---|
| s0 | We introduce a fast and memory efficient approach to compute the persistent homology (PH) of a sequence of simplicial complexes. | contribution 1.00 | 0.92 | 0.22 | asserted 1.00 |
| s1 | The basic idea is to simplify the complexes of the input sequence by using strong collapses, as introduced by J. Barmak and E. | method 0.96 | 0.25 | 0.06 | asserted 0.99 |
| s2 | Miniam [DCG (2012)], and to compute the PH of an induced sequence of reduced simplicial complexes that has the same PH as the initial one. | method 0.91 | 0.42 | 0.11 | asserted 0.93 |
| s3 | Our approach has several salient features that distinguishes it from previous work. | contribution 0.93 | 0.37 | 0.03 | asserted 0.94 |
| s4 | It is not limited to filtrations (i.e. sequences of nested simplicial subcomplexes) but works for other types of sequences like towers and zigzags. | contribution 0.97 | 0.66 | 0.05 | asserted 1.00 |
| s5 | To strong collapse a simplicial complex, we only need to store the maximal simplices of the complex, not the full set of all its simplices, which saves a lot of space and time. | method 0.91 | 0.68 | 0.10 | asserted 1.00 |
| s6 | Moreover, the complexes in the sequence can be strong collapsed independently and in parallel. | method 0.53 | 0.71 | 0.05 | asserted 0.96 |
| s7 | Finally, we can compromize between precision and time by choosing the number of simplicial complexes of the sequence we strong collapse. | method 0.61 | 0.80 | 0.07 | asserted 0.71 |
| s8 | As a result and as demonstrated by numerous experiments on publicly available data sets, our approach is extremely fast and memory efficient in practice. | result 0.98 | 0.95 | 0.75 | asserted 1.00 |
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The paper
Original abstract
We introduce a fast and memory efficient approach to compute the persistent homology (PH) of a sequence of simplicial complexes. The basic idea is to simplify the complexes of the input sequence by using strong collapses, as introduced by J. Barmak and E. Miniam [DCG (2012)], and to compute the PH of an induced sequence of reduced simplicial complexes that has the same PH as the initial one. Our approach has several salient features that distinguishes it from previous work. It is not limited to filtrations (i.e. sequences of nested simplicial subcomplexes) but works for other types of sequences like towers and zigzags. To strong collapse a simplicial complex, we only need to store the maximal simplices of the complex, not the full set of all its simplices, which saves a lot of space and time. Moreover, the complexes in the sequence can be strong collapsed independently and in parallel. Finally, we can compromize between precision and time by choosing the number of simplicial complexes of the sequence we strong collapse. As a result and as demonstrated by numerous experiments on publicly available data sets, our approach is extremely fast and memory efficient in practice.
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How the literature uses it
3 arXiv papers cite this in 6 sentences
Papers citing it · 5 sentences without a confident label
Compares with it 1 paper
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Notably, [ref] observes that a scheme to simplify complexes is trivially parallelizable for reasons similar to the trivial parallelization of induced maps, and [ref] describes a parallelization scheme that has similarities to our quiver scheme, but operates on chain complexes and not induced maps on homology.
Persistent and Zigzag Homology: A Matrix Factorization Viewpoint · Contributions and Related Work · 0.95
What it cites
Uses the method or tool of 1 paper
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We then convert the core tower into an equivalent filtration using the Sophia software [ref] , which implements the algorithm described by Kerber and Schreiber in [ref] .
Barcodes of Towers and a Streaming Algorithm for Persistent Homology · Computational experiments · 1.00
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