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Paper Citation Record · LEDGER

AlphaFold Meets Flow Matching for Generating Protein Ensembles

As of 9 August 2026, this Paper Citation Record lists 0 of 0 outbound references and 18 inbound Pith citation observations for arXiv:2402.04845.

A citation records a reference. It does not transfer a finding from one paper to another.

pith.paper-citation-record.v1
2402.04845 v2

Coverage vector

measured 0 of 0 reference resolution

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Source: paper_references, paper_reference_links

measured 18 of 18 standing notices

One-hop event checks from named stored sources.

Source: scholarly_work_events, retraction_status_cache, observed 2026-08-09T06:31:02.800959+00:00

measured 18 of 18 inbound itemization

Pith citing papers itemized under the disclosed page cap.

Source: paper_references, paper_reference_links, observed 2026-08-07T14:28:54.935322Z

measured 0 of 1 external citation measurements

A source-named dated measurement, never combined with another source.

Source: arxiv_reference, observed 2026-05-20T19:48:57.468726Z

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0 of 0 outbound references displayed

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Outbound references

No outbound reference observations are available for this paper version.

Pith citing papers

Observation e044cf58-b1a0-4f03-82e5-9b0cd1cf00ea · inbound

Aligning Protein Conformation Ensemble Generation with Physical Feedback cites this paper.

Aligning Protein Conformation Ensemble Generation with Physical Feedback AlphaFold Meets Flow Matching for Generating Protein Ensembles

Reference 19

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no resolver link, observed 2026-08-07T12:37:42.345437Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

source=arxiv_source observed=2026-08-07T12:37:42.345437Z digest=sha256:ef98e6ad0a217434df592915e48787b9b85cb35a8201e2933dc1e45eaaac23a6

Observation 4f7f906e-0bdb-458e-b9eb-8c1371d9e7a9 · inbound

Solving Inverse Problems via Diffusion-Based Priors: An Approximation-Free Ensemble Sampling Approach cites this paper.

Solving Inverse Problems via Diffusion-Based Priors: An Approximation-Free Ensemble Sampling Approach AlphaFold Meets Flow Matching for Generating Protein Ensembles

Reference 132

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no resolver link, observed 2026-08-07T10:54:50.121519Z

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Unavailable: canonical work link unavailable.

source=pdf_text observed=2026-08-07T10:54:50.121519Z digest=sha256:0a321ab78e05ad4c26390479fa8b8138b56952986dd480b6079c65f3d215581e

Observation e2c4faf9-47cd-45fa-a519-257a0a46d04d · inbound

Scalable Generation of Spatial Transcriptomics from Histology Images via Whole-Slide Flow Matching cites this paper.

Scalable Generation of Spatial Transcriptomics from Histology Images via Whole-Slide Flow Matching AlphaFold Meets Flow Matching for Generating Protein Ensembles

Reference 8

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unresolved
no resolver link, observed 2026-08-07T14:28:54.935322Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

source=pdf_text observed=2026-08-07T14:28:54.935322Z digest=sha256:8414a47331cc2335b41374a164df0c62f1e612cf6c95416731b3babb6b19fa28

Observation f85e8cb9-155f-4519-a9e9-54d4411fe3a6 · inbound

MolFORM: Multi-modal Flow Matching for Structure-Based Drug Design cites this paper.

MolFORM: Multi-modal Flow Matching for Structure-Based Drug Design AlphaFold Meets Flow Matching for Generating Protein Ensembles

Reference 6

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unresolved
no resolver link, observed 2026-08-06T19:33:18.240630Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

source=pdf_text observed=2026-08-06T19:33:18.240630Z digest=sha256:8bf4c7f95c64471856d8b86381ff2e5f338c2cb37ef703d6966cd7a8a5f09ed3

Observation 09ae9948-0c4b-4dba-ba1c-84edad2e999c · inbound

Hierarchical Rectified Flow Matching with Mini-Batch Couplings cites this paper.

Hierarchical Rectified Flow Matching with Mini-Batch Couplings AlphaFold Meets Flow Matching for Generating Protein Ensembles

Reference 15

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unresolved
no resolver link, observed 2026-08-06T16:32:57.133178Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

source=arxiv_source observed=2026-08-06T16:32:57.133178Z digest=sha256:e72f92e3e2d1c0b29b86c0471077d4e274f42e3c57d112c841aba90aac58ea6c

Observation 53873715-260b-42f5-a354-e312aa3f5971 · inbound

FlowBack-Adjoint: Physics-Aware and Energy-Guided Conditional Flow-Matching for All-Atom Protein Backmapping cites this paper.

FlowBack-Adjoint: Physics-Aware and Energy-Guided Conditional Flow-Matching for All-Atom Protein Backmapping AlphaFold Meets Flow Matching for Generating Protein Ensembles

Reference 2010

Resolution
unresolved
no resolver link, observed 2026-08-06T04:25:44.209804Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

source=pdf_text observed=2026-08-06T04:25:44.209804Z digest=sha256:48208903861c8ef112b854c5e476ae6f2963aba9bd67796cbbece5b1a8201c99

Observation c3996f63-2651-4a68-9cc3-ed962bb4e47a · inbound

Energy-Based Flow Matching for Generating 3D Molecular Structure cites this paper.

Energy-Based Flow Matching for Generating 3D Molecular Structure AlphaFold Meets Flow Matching for Generating Protein Ensembles

Reference 29

Resolution
unresolved
no resolver link, observed 2026-08-05T16:11:16.946612Z

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Unavailable: canonical work link unavailable.

source=arxiv_source observed=2026-08-05T16:11:16.946612Z digest=sha256:6f81c9fc7f640955dbf096a0ee91fba5bcc2fdc673a0c5582f08fc62118b8ff1

Observation 21fb0d2f-f4cb-41f2-857c-487413c89f02 · inbound

Learning residue level protein dynamics with multiscale Gaussians cites this paper.

Learning residue level protein dynamics with multiscale Gaussians AlphaFold Meets Flow Matching for Generating Protein Ensembles

Reference 15

Resolution
verified exact
arxiv_id, observed 2026-05-18T20:36:50.216270Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-09T06:31:02.800959+00:00.

source=arxiv_source observed=2026-05-18T20:36:43.189257Z digest=sha256:e50e87f9baca61f9c4a9537f9823b02c043647b1237180356dff1515c9c6af6a

Observation 8dcd4118-d9fe-4f94-9050-af4277ad94b3 · inbound

Feynman-Kac-Flow: Inference Steering of Conditional Flow Matching to an Energy-Tilted Posterior cites this paper.

Feynman-Kac-Flow: Inference Steering of Conditional Flow Matching to an Energy-Tilted Posterior AlphaFold Meets Flow Matching for Generating Protein Ensembles

Reference 12

Resolution
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no resolver link, observed 2026-08-05T12:35:07.025835Z

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Unavailable: canonical work link unavailable.

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Observation db1c1aea-40a8-42c0-8f8a-9452f486ee86 · inbound

Sesame: Opening the door to protein pockets cites this paper.

Sesame: Opening the door to protein pockets AlphaFold Meets Flow Matching for Generating Protein Ensembles

Reference 20

Resolution
unresolved
no resolver link, observed 2026-08-05T17:57:16.565423Z

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Unavailable: canonical work link unavailable.

source=arxiv_source observed=2026-08-05T17:57:16.565423Z digest=sha256:3bb0a5fd25f7a5f344e09d86a0aadb280972f460a675fb7e18e562a3e1783ce5

Observation b714d175-d99b-4699-9d0a-281fa6b973c0 · inbound

Align Your Structures: Generating Trajectories with Structure Pretraining for Molecular Dynamics cites this paper.

Align Your Structures: Generating Trajectories with Structure Pretraining for Molecular Dynamics AlphaFold Meets Flow Matching for Generating Protein Ensembles

Reference 29

Resolution
unresolved
no resolver link, observed 2026-07-13T12:05:54.442913Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

source=arxiv_source observed=2026-07-13T12:05:54.442913Z digest=sha256:0877ef1a32bc42e2b7e091f2f32dc21c2b05ecacb9ba79a3ab94173844ddf8fc

Observation 3e5272d1-c8bc-48cd-88e3-c6dfce57832d · inbound

ConforNets: Latents-Based Conformational Control in OpenFold3 cites this paper.

ConforNets: Latents-Based Conformational Control in OpenFold3 AlphaFold Meets Flow Matching for Generating Protein Ensembles

Reference 2

Resolution
verified exact
arxiv_id, observed 2026-05-11T12:51:09.299357Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-09T06:31:02.800959+00:00.

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Observation 401dd8bf-fc66-48f8-b962-6b7b5b2e5191 · inbound

ENSEMBITS: an alphabet of protein conformational ensembles cites this paper.

ENSEMBITS: an alphabet of protein conformational ensembles AlphaFold Meets Flow Matching for Generating Protein Ensembles

Reference 6

Resolution
verified exact
arxiv_id, observed 2026-05-14T19:12:50.757263Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-09T06:31:02.800959+00:00.

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Observation a45bd714-4df8-4d3e-a318-53a3490b08eb · inbound

ENSEMBITS: an alphabet of protein conformational ensembles cites this paper.

ENSEMBITS: an alphabet of protein conformational ensembles AlphaFold Meets Flow Matching for Generating Protein Ensembles

Reference 6

Resolution
verified exact
arxiv_id, observed 2026-05-15T04:55:04.037147Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-09T06:31:02.800959+00:00.

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Observation 58e14dd5-2a57-4ce0-9f2e-4e95c01757f0 · inbound

Entropy Across the Bridge: Conditional-Marginal Discretization for Flow and Schr\"odinger Samplers cites this paper.

Entropy Across the Bridge: Conditional-Marginal Discretization for Flow and Schr\"odinger Samplers AlphaFold Meets Flow Matching for Generating Protein Ensembles

Reference 18

Resolution
verified exact
arxiv_id, observed 2026-05-20T19:48:57.470481Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-09T06:31:02.800959+00:00.

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Observation 3cebe551-241d-4e58-9619-f19eb69a9b38 · inbound

Spectral Diffusion for Protein Dynamics cites this paper.

Spectral Diffusion for Protein Dynamics AlphaFold Meets Flow Matching for Generating Protein Ensembles

Reference 66

Resolution
unresolved
no resolver link, observed 2026-07-11T21:27:22.768274Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

source=arxiv_source observed=2026-07-11T21:27:22.768274Z digest=sha256:69945cd4eb1f28aede0efde85cd0710eb1fd46bdc0be70b95d999046d6ab0bd6

Observation 504d3096-c4cc-4303-8c22-d8ae670ec803 · inbound

S1-Omni: A Unified Multimodal Reasoning Model for Scientific Understanding, Prediction, and Generation cites this paper.

S1-Omni: A Unified Multimodal Reasoning Model for Scientific Understanding, Prediction, and Generation AlphaFold Meets Flow Matching for Generating Protein Ensembles

Reference 16

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unresolved
no resolver link, observed 2026-08-01T22:38:25.385270Z

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Unavailable: canonical work link unavailable.

source=pdf_text observed=2026-08-01T22:38:25.385270Z digest=sha256:3592d22e7c7f797d732a47657b172a0bf267e3605ddb774c90c1e1fcb8f4c3df

Observation f5294753-ada5-42df-b0b7-2ef9e6967a9c · inbound

Neural spectroscopy of AlphaFold2 reveals encoded protein conformational landscapes cites this paper.

Neural spectroscopy of AlphaFold2 reveals encoded protein conformational landscapes AlphaFold Meets Flow Matching for Generating Protein Ensembles

Reference 27

Resolution
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no resolver link, observed 2026-08-01T21:29:34.462170Z

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Unavailable: canonical work link unavailable.

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