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scInterpreter: Training Large Language Models to Interpret scRNA-seq Data for Cell Type Annotation

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arxiv 2402.12405 v1 pith:HZD7TFMQ submitted 2024-02-18 q-bio.GN cs.AI

classification q-bio.GNcs.AI
keywords languagelargemodelscelldatainterpretmodelpotential
verification ladder T0 review T1 audit T2 compute T3 formal
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Despite the inherent limitations of existing Large Language Models in directly reading and interpreting single-cell omics data, they demonstrate significant potential and flexibility as the Foundation Model. This research focuses on how to train and adapt the Large Language Model with the capability to interpret and distinguish cell types in single-cell RNA sequencing data. Our preliminary research results indicate that these foundational models excel in accurately categorizing known cell types, demonstrating the potential of the Large Language Models as effective tools for uncovering new biological insights.

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Cited by 1 Pith paper

Reviewed papers in the Pith corpus that reference this work. Sorted by Pith novelty score. Full citation record

  1. SPATIA: Multimodal Generation and Prediction of Spatial Cell Phenotypes

    q-bio.QM 2025-07 conditional novelty 6.0 of 10

    A hierarchical multimodal model fusing morphology, expression, and spatial context that generates target-state cell morphologies from optimal-transport weak pairs, trained on a 25.9M-cell atlas and benchmarked against...

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