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Asymmetric enzyme kinetics of F1-ATPase induced by rotation-assisted substrate binding

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arxiv 2402.17326 v2 pith:BVZ6TEU4 submitted 2024-02-27 physics.bio-ph

classification physics.bio-ph
keywords synthesisbindingf1-atpasesubstratekineticsrateasymmetricenzyme
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We demonstrate asymmetric enzyme kinetics of a biomolecular motor F1-ATPase between synthesis and hydrolysis of adenosine triphosphate (ATP). Our experiments show that ATP hydrolysis follows Michaelis-Menten kinetics, but ATP synthesis, which is an F1-ATPase's primary biological role, deviates from it. Specifically, the synthesis rate is sustained even at low substrate concentrations. Analysis of a theoretical model consistent with the experimental results reveals that ATP synthesis implements a rotation-assisted mechanism, in which a limited binding rate at low substrate concentration is partially compensated for by rotation to an angle where the binding rate is high. The results may imply that F1-ATPase implements a regulatory mechanism of enhancing substrate binding for ATP synthesis.

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  1. Acceleration of enzymatic reaction-diffusion kinetics by intermediate state

    physics.bio-ph 2025-05 conditional novelty 5.0 of 10

    In a reaction-diffusion model, intermediate chemical states accelerate molecular motor flux by lowering the effective barrier height, especially under external load, except in the slow-reaction limit with strongly asy...

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