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GNNBENCH: Fair and Productive Benchmarking for Single-GPU GNN System

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arxiv 2404.04118 v1 pith:ZKU46DNH submitted 2024-04-05 cs.LG cs.DC

classification cs.LGcs.DC
keywords systemgnnbenchseveralbenchmarkbenchmarkingcommunityintegrationabsence
verification ladder T0 review T1 audit T2 compute T3 formal

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We hypothesize that the absence of a standardized benchmark has allowed several fundamental pitfalls in GNN System design and evaluation that the community has overlooked. In this work, we propose GNNBench, a plug-and-play benchmarking platform focused on system innovation. GNNBench presents a new protocol to exchange their captive tensor data, supports custom classes in System APIs, and allows automatic integration of the same system module to many deep learning frameworks, such as PyTorch and TensorFlow. To demonstrate the importance of such a benchmark framework, we integrated several GNN systems. Our results show that integration with GNNBench helped us identify several measurement issues that deserve attention from the community.

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Cited by 2 Pith papers

Reviewed papers in the Pith corpus that reference this work. Sorted by Pith novelty score. Full citation record

  1. Graph Neural Networks Are More Than Filters: Revisiting and Benchmarking from A Spectral Perspective

    cs.LG 2024-12 conditional novelty 5.0 of 10

    GNNs can produce frequency components absent from their input, so their spectral behavior is not dominated by the aggregation filter, and a new benchmark quantifies this across 14 models.

  2. GNN-Suite: a Graph Neural Network Benchmarking Framework for Biomedical Informatics

    cs.LG 2025-05 conditional novelty 4.0 of 10

    A new benchmarking framework built on Nextflow shows graph neural networks outperform feature-only logistic regression across four cancer-gene network configurations.

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