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DeeperHistReg: Robust Whole Slide Images Registration Framework
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DeeperHistReg is a software framework dedicated to registering whole slide images (WSIs) acquired using multiple stains. It allows one to perform the preprocessing, initial alignment, and nonrigid registration of WSIs acquired using multiple stains (e.g. hematoxylin \& eosin, immunochemistry). The framework implements several state-of-the-art registration algorithms and provides an interface to operate on arbitrary resolution of the WSIs (up to 200k x 200k). The framework is extensible and new algorithms can be easily integrated by other researchers. The framework is available both as a PyPI package and as a Docker container.
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Cited by 1 Pith paper
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ZeroReg3D: A Zero-shot Registration Pipeline for 3D Consecutive Histopathology Image Reconstruction
ZeroReg3D is a zero-shot pipeline that pairs XFeat keypoint matching with affine and B-spline registration to align serial histology slices, outperforming tested baselines on kidney datasets.
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