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DeeperHistReg: Robust Whole Slide Images Registration Framework

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arxiv 2404.14434 v1 pith:GUY4OG3W submitted 2024-04-19 eess.IV cs.CVq-bio.QM

classification eess.IVcs.CVq-bio.QM
keywords frameworkregistrationwsisacquiredalgorithmsdeeperhistregimagesmultiple
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DeeperHistReg is a software framework dedicated to registering whole slide images (WSIs) acquired using multiple stains. It allows one to perform the preprocessing, initial alignment, and nonrigid registration of WSIs acquired using multiple stains (e.g. hematoxylin \& eosin, immunochemistry). The framework implements several state-of-the-art registration algorithms and provides an interface to operate on arbitrary resolution of the WSIs (up to 200k x 200k). The framework is extensible and new algorithms can be easily integrated by other researchers. The framework is available both as a PyPI package and as a Docker container.

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Cited by 1 Pith paper

Reviewed papers in the Pith corpus that reference this work. Sorted by Pith novelty score. Full citation record

  1. ZeroReg3D: A Zero-shot Registration Pipeline for 3D Consecutive Histopathology Image Reconstruction

    cs.CV 2025-06 conditional novelty 5.0 of 10

    ZeroReg3D is a zero-shot pipeline that pairs XFeat keypoint matching with affine and B-spline registration to align serial histology slices, outperforming tested baselines on kidney datasets.

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