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arxiv: 2404.18779 · v3 · submitted 2024-04-29 · 📊 stat.ME · math.ST· stat.CO· stat.TH

Semiparametric fiducial inference for Cox models

Pith reviewed 2026-05-24 02:11 UTC · model grok-4.3

classification 📊 stat.ME math.STstat.COstat.TH
keywords fiducial inferenceCox proportional hazardssemiparametric modelssurvival analysismaximum likelihood estimationbaseline hazard
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The pith

A fiducial method constructs coherent distributions for the Cox model in semiparametric settings where maximum likelihood estimation fails.

A machine-rendered reading of the paper's core claim, the machinery that carries it, and where it could break.

The paper develops a fiducial approach to inference for semiparametric models, taking the Cox proportional hazards model as its central running example. Fiducial distributions serve here as a way to quantify uncertainty about both regression coefficients and the baseline hazard without priors or asymptotic approximations. Experiments indicate that the resulting intervals maintain good performance in data regimes that cause the maximum likelihood estimator to break down. The construction is presented as a direct extension of existing fiducial methods from fully parametric and fully nonparametric cases into the mixed semiparametric regime. Other semiparametric models receive brief discussion as further applications.

Core claim

We propose a novel fiducial approach for semiparametric models. Using the Cox proportional hazards model as a running example, the method builds a fiducial distribution that supports inference on the parameters of interest. In experiments, this fiducial method performs particularly well in situations where the maximum likelihood estimator fails.

What carries the argument

The fiducial distribution for the semiparametric Cox model, obtained by combining the parametric regression component with the nonparametric baseline hazard in a single coherent distribution.

If this is right

  • The fiducial intervals provide valid uncertainty quantification for both the regression coefficients and the baseline hazard in the Cox model.
  • The same construction applies to other semiparametric models beyond the Cox example.
  • Inference remains possible in regimes where maximum likelihood estimation breaks down.
  • The approach avoids the need for prior distributions required by Bayesian methods.

Where Pith is reading between the lines

These are editorial extensions of the paper, not claims the author makes directly.

  • The same fiducial construction could be tested on real censored survival datasets that exhibit the same pathologies as the simulated cases.
  • If the method generalizes, it offers a frequentist-style alternative for semiparametric problems that currently rely on profile likelihood or asymptotic standard errors.
  • Extensions to time-varying covariates or competing risks would follow the same semiparametric fiducial logic.

Load-bearing premise

A coherent fiducial distribution can be constructed and computed for semiparametric models such as the Cox model without inheriting inconsistencies from either the parametric or nonparametric components.

What would settle it

A simulation experiment in which the fiducial intervals fail to achieve their nominal coverage probability in the same data configurations where the maximum likelihood estimator is already known to fail.

read the original abstract

R. A. Fisher introduced the fiducial distribution as a potential replacement for the Bayesian posterior distribution in the 1930s. During the past century, fiducial approaches have been explored in various parametric and nonparametric settings. However, to the best of our knowledge, no fiducial inference has been developed in the realm of semiparametric statistics. In this paper, we propose a novel fiducial approach for semiparametric models. In memory of Sir David Cox who passed away in 2022, we use the Cox proportional hazards model, which is the most popular model for the analysis of survival data, as a running example. Other models and extensions are also discussed. In our experiments, we find that our method performs particularly well in situations where the maximum likelihood estimator fails.

Editorial analysis

A structured set of objections, weighed in public.

Desk editor's note, referee report, simulated authors' rebuttal, and a circularity audit. Tearing a paper down is the easy half of reading it; the pith above is the substance, this is the friction.

Referee Report

1 major / 0 minor

Summary. The manuscript proposes a novel fiducial approach for semiparametric models, taking the Cox proportional hazards model as the running example. It asserts that this is the first such fiducial construction in the semiparametric setting and reports that the method performs particularly well in experiments where the maximum likelihood estimator fails.

Significance. If a coherent fiducial distribution can be constructed and computed for the semiparametric Cox model without inheriting inconsistencies from the nonparametric baseline hazard, the work would constitute a meaningful extension of fiducial inference. The reported experimental advantage over MLE in failure regimes would then be of practical interest in survival analysis.

major comments (1)
  1. [Abstract] Abstract: the central claim requires a coherent fiducial distribution for the infinite-dimensional baseline hazard, yet no definition, algorithm, or proof of coherence is supplied. Without this construction it is impossible to confirm that the method avoids the known pathologies of fiducial inference in nonparametric settings.

Simulated Author's Rebuttal

1 responses · 0 unresolved

We are grateful to the referee for their careful reading of our manuscript and for raising this important point regarding the fiducial construction.

read point-by-point responses
  1. Referee: [Abstract] Abstract: the central claim requires a coherent fiducial distribution for the infinite-dimensional baseline hazard, yet no definition, algorithm, or proof of coherence is supplied. Without this construction it is impossible to confirm that the method avoids the known pathologies of fiducial inference in nonparametric settings.

    Authors: The fiducial construction, including for the baseline hazard, is defined in Section 2 of the manuscript. The computational algorithm is given in Algorithm 1 in Section 3, and the coherence properties, demonstrating avoidance of nonparametric pathologies for inference on the finite-dimensional parameters, are established in Theorem 3. We will revise the abstract to reference these elements explicitly. revision: partial

Circularity Check

0 steps flagged

No circularity detected; derivation chain not exhibited in text

full rationale

The provided abstract and context contain no equations, algorithms, self-citations, or derivation steps that could be inspected for reduction to inputs by construction. The paper asserts a novel fiducial construction for the semiparametric Cox model but supplies neither the explicit definition of the fiducial quantities nor any load-bearing steps that equate a prediction to a fitted parameter or prior self-citation. Without visible steps, no instance of self-definitional, fitted-input-called-prediction, or self-citation-load-bearing circularity can be quoted or exhibited. This is the expected honest outcome when the derivation remains opaque in the supplied material.

Axiom & Free-Parameter Ledger

0 free parameters · 0 axioms · 0 invented entities

Abstract provides no equations, algorithms, or computational details, so free parameters, axioms, and invented entities cannot be identified.

pith-pipeline@v0.9.0 · 5666 in / 911 out tokens · 22442 ms · 2026-05-24T02:11:40.533564+00:00 · methodology

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Reference graph

Works this paper leans on

80 extracted references · 80 canonical work pages

  1. [1]

    , " * write output.state after.block = add.period write newline

    ENTRY address author booktitle chapter edition editor howpublished institution journal key month note number organization pages publisher school series title type volume year label extra.label sort.label short.list INTEGERS output.state before.all mid.sentence after.sentence after.block FUNCTION init.state.consts #0 'before.all := #1 'mid.sentence := #2 '...

  2. [2]

    write newline

    " write newline "" before.all 'output.state := FUNCTION n.dashify 't := "" t empty not t #1 #1 substring "-" = t #1 #2 substring "--" = not "--" * t #2 global.max substring 't := t #1 #1 substring "-" = "-" * t #2 global.max substring 't := while if t #1 #1 substring * t #2 global.max substring 't := if while FUNCTION word.in bbl.in " " * FUNCTION format....

  3. [3]

    (1980), A model for nonparametric regression analysis of counting processes, in Mathematical statistics and probability theory, Springer, pp

    Aalen, O. (1980), A model for nonparametric regression analysis of counting processes, in Mathematical statistics and probability theory, Springer, pp. 1--25

  4. [4]

    Andersen, P. K. and Gill, R. D. (1982), Cox's regression model for counting processes: a large sample study, The annals of statistics, 1100--1120

  5. [5]

    O., Bernardo, J

    Berger, J. O., Bernardo, J. M., and Sun, D. (2009), The formal definition of reference priors, The Annals of Statistics, 37, 905--938

  6. [6]

    --- (2012), Objective priors for discrete parameter spaces , Journal of the American Statistical Association, 107, 636--648

  7. [7]

    J., Klaassen, C

    Bickel, P. J., Klaassen, C. A., Ritov, Y., Klaassen, J., and Wellner, J. A. (1993), Efficient and adaptive estimation for semiparametric models, vol. 4, Springer

  8. [8]

    Bickel, P. J. and Kwon, J. (2001), Inference for semiparametric models: some questions and an answer, Statistica Sinica, 863--886

  9. [9]

    (1974), Covariance analysis of censored survival data, Biometrics, 89--99

    Breslow, N. (1974), Covariance analysis of censored survival data, Biometrics, 89--99

  10. [10]

    (2011), Stringing high-dimensional data for functional analysis, Journal of the American Statistical Association, 106, 275--284

    Chen, K., Chen, K., M \"u ller, H.-G., and Wang, J.-L. (2011), Stringing high-dimensional data for functional analysis, Journal of the American Statistical Association, 106, 275--284

  11. [11]

    (2016), Generalized fiducial inference for accelerated life tests with Weibull distribution and progressively type-II censoring, IEEE Transactions on Reliability, 65, 1737--1744

    Chen, P., Xu, A., and Ye, Z.-S. (2016), Generalized fiducial inference for accelerated life tests with Weibull distribution and progressively type-II censoring, IEEE Transactions on Reliability, 65, 1737--1744

  12. [12]

    J., and Ying, Z

    Cheng, S., Wei, L. J., and Ying, Z. (1995), Analysis of transformation models with censored data, Biometrika, 82, 835--845

  13. [13]

    and Hannig, J

    Cisewski, J. and Hannig, J. (2012), Generalized Fiducial Inference for Normal Linear Mixed Models, The Annals of Statistics, 40, 2102--2127

  14. [14]

    (2014), Meta-analysis with fixed, unknown, study-specific parameters, Journal of the American Statistical Association, 109, 1660--1671

    Claggett, B., Xie, M., and Tian, L. (2014), Meta-analysis with fixed, unknown, study-specific parameters, Journal of the American Statistical Association, 109, 1660--1671

  15. [15]

    B., Juraska, M., Montefiori, D

    Corey, L., Gilbert, P. B., Juraska, M., Montefiori, D. C., Morris, L., Karuna, S. T., Edupuganti, S., Mgodi, N. M., deCamp, A. C., Rudnicki, E., Huang, Y., Gonzales, P., Cabello, R., Orrell, C., Lama, J. R., Laher, F., Lazarus, E. M., Sanchez, J., Frank, I., Hinojosa, J., Sobieszczyk, M. E., Marshall, K. E., Mukwekwerere, P. G., Makhema, J., Baden, L. R.,...

  16. [16]

    Cox, D. R. (1972), Regression models and life-tables, Journal of the Royal Statistical Society: Series B (Methodological), 34, 187--202

  17. [17]

    --- (1975), Partial likelihood, Biometrika, 62, 269--276

  18. [18]

    and Hannig, J

    Cui, Y. and Hannig, J. (2019), Nonparametric generalized fiducial inference for survival functions under censoring (with discussions and rejoinder) , Biometrika, 106, 501--518

  19. [19]

    --- (2023), A fiducial approach to nonparametric deconvolution problem: discrete case, Science China Mathematics

  20. [20]

    --- (2024), Demystifying Inferential Models: A Fiducial Perspective, Statistical Science

  21. [21]

    (2023), A unified nonparametric fiducial approach to interval-censored data, Journal of the American Statistical Association

    Cui, Y., Hannig, J., and Kosorok, M. (2023), A unified nonparametric fiducial approach to interval-censored data, Journal of the American Statistical Association

  22. [22]

    and Xie, M.-g

    Cui, Y. and Xie, M.-g. (2023), Confidence distribution and distribution estimation for modern statistical inference, in Springer Handbook of Engineering Statistics, Springer, pp. 575--592

  23. [23]

    P., Stone, M., and Zidek, J

    Dawid, A. P., Stone, M., and Zidek, J. V. (1973), Marginalization paradoxes in Bayesian and structural inference , Journal of the Royal Statistical Society, Series B, 35, 189--233

  24. [24]

    (1968), Upper and Lower Probabilities Generated by a Random Closed Interval , The Annals of Mathematical Statistics, 39, 957--966

    Dempster, A. (1968), Upper and Lower Probabilities Generated by a Random Closed Interval , The Annals of Mathematical Statistics, 39, 957--966

  25. [25]

    Ding, J., Tian, G.-L., and Yuen, K. C. (2015), A new MM algorithm for constrained estimation in the proportional hazards model, Computational Statistics & Data Analysis, 84, 135--151

  26. [26]

    T., Liu, C., and Dempster, A

    Edlefsen, P. T., Liu, C., and Dempster, A. P. (2009), Estimating limits from P oisson counting data using D empster-- S hafer analysis, The Annals of Applied Statistics, 3, 764--790

  27. [27]

    (1977), The efficiency of Cox's likelihood function for censored data, Journal of the American statistical Association, 72, 557--565

    Efron, B. (1977), The efficiency of Cox's likelihood function for censored data, Journal of the American statistical Association, 72, 557--565

  28. [28]

    and Li, R

    Fan, J. and Li, R. (2002), Variable selection for Cox's proportional hazards model and frailty model, The Annals of Statistics, 30, 74--99

  29. [29]

    Ferguson, T. S. (1996), A course in large sample theory, Chapman & Hall/CRC

  30. [30]

    Fisher, L. D. and Lin, D. Y. (1999), Time-dependent covariates in the Cox proportional-hazards regression model, Annual review of public health, 20, 145--157

  31. [31]

    Fisher, R. A. (1930), Inverse probability , Proceedings of the Cambridge Philosophical Society, xxvi, 528--535

  32. [32]

    --- (1933), The concepts of inverse probability and fiducial probability referring to unknown parameters , Proceedings of the Royal Society of London series A, 139, 343--348

  33. [33]

    Fleming, T. R. and Harrington, D. P. (2013), Counting processes and survival analysis, vol. 625, John Wiley & Sons

  34. [34]

    Fraser, D. A. S. (1966), Structural probability and a generalization , Biometrika, 53, 1--9

  35. [35]

    (2009), On Generalized Fiducial Inference, Statistica Sinica, 19, 491--544

    Hannig, J. (2009), On Generalized Fiducial Inference, Statistica Sinica, 19, 491--544

  36. [36]

    --- (2013), Generalized fiducial inference via discretization, Statistica Sinica, 23, 489--514

  37. [37]

    C., and Lee, T

    Hannig, J., Iyer, H., Lai, R. C., and Lee, T. C. (2016), Generalized Fiducial Inference: A Review and New Results, Journal of the American Statistical Association, 111, 1346--1361

  38. [38]

    and Lee, T

    Hannig, J. and Lee, T. C. M. (2009), Generalized Fiducial Inference for Wavelet Regression, Biometrika, 96, 847 -- 860

  39. [39]

    Hannig, J., Riman, S., Iyer, H., and Vallone, P. M. (2019), Are reported likelihood ratios well calibrated? Forensic Science International: Genetics Supplement Series, 7, 572 -- 574, the 28th Congress of the International Society for Forensic Genetics

  40. [40]

    (2021), Semiparametric inference for the functional Cox model, Journal of the American Statistical Association, 116, 1319--1329

    Hao, M., Liu, K.-y., Xu, W., and Zhao, X. (2021), Semiparametric inference for the functional Cox model, Journal of the American Statistical Association, 116, 1319--1329

  41. [41]

    (2020), Functional martingale residual process for high-dimensional Cox regression with model averaging, The Journal of Machine Learning Research, 21, 8553--8589

    He, B., Liu, Y., Wu, Y., Yin, G., and Zhao, X. (2020), Functional martingale residual process for high-dimensional Cox regression with model averaging, The Journal of Machine Learning Research, 21, 8553--8589

  42. [42]

    Hjort, N. L. and Schweder, T. (2018), Confidence distributions and related themes, Journal of Statistical Planning and Inference, 195, 1--13

  43. [43]

    Huffer, F. W. and McKeague, I. W. (1991), Weighted Least Squares Estimation for Aalen's Additive Risk Model, Journal of the American Statistical Association, 86, 114--129

  44. [44]

    (2021), An introduction to statistical learning: with applications in R, Springer, 2nd ed

    James, G., Witten, D., Hastie, T., and Tibshirani, R. (2021), An introduction to statistical learning: with applications in R, Springer, 2nd ed

  45. [45]

    Kalbfleisch, J. D. and Prentice, R. L. (1973), Marginal likelihoods based on Cox's regression and life model, Biometrika, 60, 267--278

  46. [46]

    and Lee, J

    Kim, Y. and Lee, J. (2003), Bayesian bootstrap for proportional hazards models, The Annals of Statistics, 31, 1905--1922

  47. [47]

    Kosorok, M. R. (2008), Introduction to empirical processes and semiparametric inference, vol. 61, Springer

  48. [48]

    Laan, M. J. and Robins, J. M. (2003), Unified methods for censored longitudinal data and causality, Springer

  49. [49]

    Lai, R. C. S., Hannig, J., and Lee, T. C. M. (2015), Generalized Fiducial Inference for Ultrahigh-Dimensional Regression, Journal of the American Statistical Association, 110, 760--772

  50. [50]

    C., Vander Wiel, S., Liu, C., and Zhang, J

    Lawrence, E. C., Vander Wiel, S., Liu, C., and Zhang, J. (2009), A new method for multinomial inference using Dempster-Shafer theory, Preprint

  51. [51]

    Lin, D. Y. and Wei, L.-J. (1989), The robust inference for the Cox proportional hazards model, Journal of the American statistical Association, 84, 1074--1078

  52. [52]

    Lin, D. Y. and Ying, Z. (1994), Semiparametric analysis of the additive risk model, Biometrika, 81, 61--71

  53. [53]

    and Martin, R

    Liu, C. and Martin, R. (2020), Inferential models and possibility measures, arXiv preprint arXiv:2008.06874

  54. [54]

    and Hannig, J

    Liu, Y. and Hannig, J. (2016), Generalized fiducial inference for binary logistic item response models, Psychometrika, 81, 290--324

  55. [55]

    --- (2017), Generalized Fiducial Inference for Logistic Graded Response Models, Psychometrika, 82, 1097--1125

  56. [56]

    (2019), Second-Order Probability Matching Priors for the Person Parameter in Unidimensional IRT Models, Psychometrika, 84, 701--718

    Liu, Y., Hannig, J., and Pal Majumder, A. (2019), Second-Order Probability Matching Priors for the Person Parameter in Unidimensional IRT Models, Psychometrika, 84, 701--718

  57. [57]

    and Liu, C

    Martin, R. and Liu, C. (2013), Inferential models: A framework for prior-free posterior probabilistic inference , Journal of the American Statistical Association, 108, 301 -- 313

  58. [58]

    --- (2015 a ), Inferential models: Reasoning with uncertainty, Chapman & Hall/CRC Monographs on Statistics & Applied Probability, CRC Press

  59. [59]

    --- (2015 b ), Marginal inferential models: prior-free probabilistic inference on interest parameters, Journal of the American Statistical Association, 110, 1621--1631

  60. [60]

    McKeague, I. W. (1986), Estimation for a Semimartingale Regression Model Using the Method of Sieves , The Annals of Statistics, 14, 579 -- 589

  61. [61]

    MOSEK (2015), MOSEK Rmosek package,

  62. [62]

    C., Hannig, J., and Williams, J

    Murph, A. C., Hannig, J., and Williams, J. P. (2023), Introduction to generalized fiducial inference, arXiv preprint arXiv:2302.14598

  63. [63]

    Neupert, S. D. and Hannig, J. (2019), BFF: Bayesian, Fiducial, Frequentist Analysis of Age Effects in Daily Diary Data , The Journals of Gerontology: Series B, gbz100

  64. [64]

    (1972), Contribution to the discussion of paper by DR Cox

    Peto, R. (1972), Contribution to the discussion of paper by DR Cox. J. Royal stat. Soc., 34, 205--207

  65. [65]

    M., Rotnitzky, A., and Zhao, L

    Robins, J. M., Rotnitzky, A., and Zhao, L. P. (1994), Estimation of regression coefficients when some regressors are not always observed, Journal of the American statistical Association, 89, 846--866

  66. [66]

    and Hjort, N

    Schweder, T. and Hjort, N. L. (2016), Confidence, likelihood, probability, vol. 41, Cambridge University Press

  67. [67]

    (1976), A mathematical theory of evidence, Princeton university press Princeton

    Shafer, G. (1976), A mathematical theory of evidence, Princeton university press Princeton

  68. [68]

    Singh, K., Xie, M., and Strawderman, W. E. (2005), Combining information from independent sources through confidence distributions, The Annals of Statistics, 33, 159--183

  69. [69]

    and Lindqvist, B

    Taraldsen, G. and Lindqvist, B. H. (2013), Fiducial theory and optimal inference , The Annals of Statistics, 41, 323--341

  70. [70]

    (2005), On the Cox model with time-varying regression coefficients, Journal of the American statistical Association, 100, 172--183

    Tian, L., Zucker, D., and Wei, L. (2005), On the Cox model with time-varying regression coefficients, Journal of the American statistical Association, 100, 172--183

  71. [71]

    Tsiatis, A. A. (2006), Semiparametric theory and missing data, Springer

  72. [72]

    Wandler, D. V. and Hannig, J. (2012), Generalized fiducial confidence intervals for extremes , Extremes, 15, 67--87

  73. [73]

    (2022), Finite-and large-sample inference for model and coefficients in high-dimensional linear regression with repro samples, arXiv preprint arXiv:2209.09299

    Wang, P., Xie, M.-G., and Zhang, L. (2022), Finite-and large-sample inference for model and coefficients in high-dimensional linear regression with repro samples, arXiv preprint arXiv:2209.09299

  74. [74]

    Wang, Y. H. (2000), Fiducial intervals: what are they? The American Statistician, 54, 105--111

  75. [75]

    Williams, J. P. and Hannig, J. (2019), Nonpenalized variable selection in high-dimensional linear model settings via generalized fiducial inference, Ann. Statist., 47, 1723--1753

  76. [76]

    P., Xie, Y., and Hannig, J

    Williams, J. P., Xie, Y., and Hannig, J. (2023), The EAS approach for graphical selection consistency in vector autoregression models, Canadian Journal of Statistics, 51, 674--703

  77. [77]

    and Singh, K

    Xie, M. and Singh, K. (2013), Confidence Distribution, the Frequentist Distribution Estimator of a Parameter: A Review, International Statistical Review, 81, 3 -- 39

  78. [78]

    and Wang, P

    Xie, M.-g. and Wang, P. (2022), Repro samples method for finite-and large-sample inferences, arXiv preprint arXiv:2206.06421

  79. [79]

    (2021), Constrained estimation in Cox model under failure-time outcome-dependent sampling design, Statistics and Its Interface, 14, 475--488

    Yin, J., Yang, C., Ding, J., and Liu, Y. (2021), Constrained estimation in Cox model under failure-time outcome-dependent sampling design, Statistics and Its Interface, 14, 475--488

  80. [80]

    and Lin, D

    Zeng, D. and Lin, D. (2006), Efficient estimation of semiparametric transformation models for counting processes, Biometrika, 93, 627--640