Paper Citation Record · LEDGER

Population dynamics of multiple ecDNA types

As of 13 August 2026, this Paper Citation Record lists 37 of 37 outbound references and 0 inbound Pith citation observations for arXiv:2411.14588.

A citation records a reference. It does not transfer a finding from one paper to another.

pith.paper-citation-record.v1
2411.14588 v3

Coverage vector

measured 37 of 37 reference resolution

Typed states for the displayed outbound observations.

Source: paper_references, paper_reference_links, observed 2026-08-12T15:15:06.688821Z

measured 37 of 37 standing notices

One-hop event checks from named stored sources.

Source: scholarly_work_events, retraction_status_cache, observed 2026-08-13T06:32:02.005865+00:00

measured 0 of 0 inbound itemization

Pith citing papers itemized under the disclosed page cap.

Source: paper_references, paper_reference_links

measured 0 of 1 external citation measurements

A source-named dated measurement, never combined with another source.

Source: cited_works

Reference resolution

37 of 37 outbound references displayed

verified exact0
verified fuzzy36
unresolved1
parse uncertain0
malformed identifier0
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External citation measurements

No source-named external measurement is stored.

Outbound references

Observation af485caa-08c4-4403-911b-c3f1f10bab89 · outbound

This paper cites Ge- nomic organization and evolution of double minutes/homogeneously staining regions with MYC amplification in human cancer.

Population dynamics of multiple ecDNA types Ge- nomic organization and evolution of double minutes/homogeneously staining regions with MYC amplification in human cancer

Reference 1

Resolution: verified fuzzy; raw_fallback, observed 2026-08-12T15:15:07.218757Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-13T06:32:02.005865+00:00.

Observation 2b586e08-b17f-4298-afbf-d2eecc33d273 · outbound

This paper cites Extrachromosomal DNA- relieving heredity constraints, accelerating tumour evolution.Annals of Oncol- ogy, 31:884–893, 2020.

Population dynamics of multiple ecDNA types Extrachromosomal DNA- relieving heredity constraints, accelerating tumour evolution.Annals of Oncol- ogy, 31:884–893, 2020

Reference 2

Resolution: verified fuzzy; raw_fallback, observed 2026-08-12T15:15:07.205001Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-13T06:32:02.005865+00:00.

Observation 851dc3b3-d003-4f88-8177-8ed74970703f · outbound

This paper cites Extrachromosomal DNA—relieving heredity constraints, accelerating tumour evolution.

Population dynamics of multiple ecDNA types Extrachromosomal DNA—relieving heredity constraints, accelerating tumour evolution

Reference 3

Resolution: verified fuzzy; raw_fallback, observed 2026-08-12T15:15:07.191292Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-13T06:32:02.005865+00:00.

Observation 007bcd83-f9f3-484b-8e19-81635fc2c6b1 · outbound

This paper cites Life history trade-offs in cancer evolution.Nature Reviews Cancer, 13:883–892, 2013.

Population dynamics of multiple ecDNA types Life history trade-offs in cancer evolution.Nature Reviews Cancer, 13:883–892, 2013

Reference 4

Resolution: verified fuzzy; raw_fallback, observed 2026-08-12T15:15:07.177693Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-13T06:32:02.005865+00:00.

Observation bbcb23e1-efeb-4b3a-a5b4-84bb77a50a42 · outbound

This paper cites DNA mismatch repair promotes APOBEC3- mediateddiffusehypermutationinhumancancers.

Population dynamics of multiple ecDNA types DNA mismatch repair promotes APOBEC3- mediateddiffusehypermutationinhumancancers

Reference 5

Resolution: verified fuzzy; raw_fallback, observed 2026-08-12T15:15:07.162236Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-13T06:32:02.005865+00:00.

Observation cc5b0981-a360-4e99-ab90-f88e6f1d1480 · outbound

This paper cites Targeted therapy resistance medi- ated by dynamic regulation of extrachromosomal mutant EGFR DNA.Science, 343:72–76, 2014.

Population dynamics of multiple ecDNA types Targeted therapy resistance medi- ated by dynamic regulation of extrachromosomal mutant EGFR DNA.Science, 343:72–76, 2014

Reference 6

Resolution: verified fuzzy; raw_fallback, observed 2026-08-12T15:15:07.142346Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-13T06:32:02.005865+00:00.

Observation 0015ad24-a1cd-4007-aea9-91fcae3b2f9a · outbound

This paper cites A general method for numerically simulating the stochastic time evolution of coupled chemical reactions.

Population dynamics of multiple ecDNA types A general method for numerically simulating the stochastic time evolution of coupled chemical reactions

Reference 7

Resolution: verified fuzzy; raw_fallback, observed 2026-08-12T15:15:07.128765Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-13T06:32:02.005865+00:00.

Observation 3633184e-b3bc-4529-b40a-dfc6f3544c67 · outbound

This paper cites Exact stochastic simulation of coupled chemical reactions.The Journal of Physical Chemistry , 81(25):2340–2361, 1977.

Population dynamics of multiple ecDNA types Exact stochastic simulation of coupled chemical reactions.The Journal of Physical Chemistry , 81(25):2340–2361, 1977

Reference 8

Resolution: verified fuzzy; raw_fallback, observed 2026-08-12T15:15:07.114681Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-13T06:32:02.005865+00:00.

Observation 77246348-f123-4ff0-b83a-7a7b2403c52c · outbound

This paper cites Stochastic simulation of chemical kinetics.

Population dynamics of multiple ecDNA types Stochastic simulation of chemical kinetics

Reference 9

Resolution: verified fuzzy; raw_fallback, observed 2026-08-12T15:15:07.099987Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-13T06:32:02.005865+00:00.

Observation 2588b798-b7fe-44d6-8e22-9ba1b690ce6f · outbound

This paper cites Population dynamics of multiple ecDNA types.

Population dynamics of multiple ecDNA types Population dynamics of multiple ecDNA types

Reference 10

Resolution: verified fuzzy; raw_fallback, observed 2026-08-12T15:15:07.086601Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-13T06:32:02.005865+00:00.

Observation 9743825e-1164-4ed4-ab21-7a08fb7015ca · outbound

This paper cites Live- cell imaging shows uneven segregation of extrachromosomal DNA elements and transcriptionally active extrachromosomal DNA hubs in cancer.Cancer Discov- ery, 12:468–483, 2022.

Population dynamics of multiple ecDNA types Live- cell imaging shows uneven segregation of extrachromosomal DNA elements and transcriptionally active extrachromosomal DNA hubs in cancer.Cancer Discov- ery, 12:468–483, 2022

Reference 11

Resolution: verified fuzzy; raw_fallback, observed 2026-08-12T15:15:07.070195Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-13T06:32:02.005865+00:00.

Observation 525b154d-8772-4d07-b4ed-195e4d397e02 · outbound

This paper cites Extrachromoso- mal DNA amplifications in cancer.Nature Reviews Genetics, 23:760–771, 2022.

Population dynamics of multiple ecDNA types Extrachromoso- mal DNA amplifications in cancer.Nature Reviews Genetics, 23:760–771, 2022

Reference 12

Resolution: verified fuzzy; raw_fallback, observed 2026-08-12T15:15:07.057097Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-13T06:32:02.005865+00:00.

Observation 93712789-cde8-486d-82e4-aa479d699785 · outbound

This paper cites Mapping clustered mutations in cancer reveals APOBEC3 mutagenesis of ecDNA.

Population dynamics of multiple ecDNA types Mapping clustered mutations in cancer reveals APOBEC3 mutagenesis of ecDNA

Reference 13

Resolution: verified fuzzy; raw_fallback, observed 2026-08-12T15:15:07.042276Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-13T06:32:02.005865+00:00.

Observation 1bdc92bd-3a47-468f-805d-cfc8457e9234 · outbound

This paper cites Errorbarsinexperimentalbiology.

Population dynamics of multiple ecDNA types Errorbarsinexperimentalbiology

Reference 14

Resolution: verified fuzzy; raw_fallback, observed 2026-08-12T15:15:07.026870Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-13T06:32:02.005865+00:00.

Observation e69d4c51-57b0-41cd-8c19-44519b4dd591 · outbound

This paper cites Recent progress in un- derstanding mechanisms of mammalian DNA amplification.Cell, 57:901–908, 1989.

Population dynamics of multiple ecDNA types Recent progress in un- derstanding mechanisms of mammalian DNA amplification.Cell, 57:901–908, 1989

Reference 15

Resolution: verified fuzzy; raw_fallback, observed 2026-08-12T15:15:07.011828Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-13T06:32:02.005865+00:00.

Observation 75bf0108-ccab-41aa-befe-9045a573d8c0 · outbound

This paper cites Extra- chromosomal DNA is associated with oncogene amplification and poor outcome across multiple cancers.Nature Genetics, 52:891–897, 2020.

Population dynamics of multiple ecDNA types Extra- chromosomal DNA is associated with oncogene amplification and poor outcome across multiple cancers.Nature Genetics, 52:891–897, 2020

Reference 16

Resolution: verified fuzzy; raw_fallback, observed 2026-08-12T15:15:06.999114Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-13T06:32:02.005865+00:00.

Observation 7029be39-cac5-4693-b874-99f09d82af6a · outbound

This paper cites Somatic mutation in cancer and normal cells.

Population dynamics of multiple ecDNA types Somatic mutation in cancer and normal cells

Reference 17

Resolution: verified fuzzy; raw_fallback, observed 2026-08-12T15:15:06.987078Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-13T06:32:02.005865+00:00.

Observation c59c0a14-f9e9-406f-a11b-5f8c24dd2f77 · outbound

This paper cites Stochastic modelling, bayesian inference, and new in vivo mea- surements elucidate the debated mtDNA bottleneck mechanism.Elife, 4:e07464, 2015.

Population dynamics of multiple ecDNA types Stochastic modelling, bayesian inference, and new in vivo mea- surements elucidate the debated mtDNA bottleneck mechanism.Elife, 4:e07464, 2015

Reference 18

Resolution: verified fuzzy; raw_fallback, observed 2026-08-12T15:15:06.975541Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-13T06:32:02.005865+00:00.

Observation 52d424b0-ee65-4539-b72b-10e757ad70e6 · outbound

This paper cites an unresolved cited work.

Population dynamics of multiple ecDNA types Unresolved cited work

Reference 19

Resolution: unresolved; raw_fallback, observed 2026-08-12T15:15:06.963310Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-13T06:32:02.005865+00:00.

Observation 1af8e2c5-6350-4679-9057-a3cde787fa39 · outbound

This paper cites Disparate pathways for extrachromosomal DNA biogenesis and genomic DNA repair.bioRxiv, 2023.

Population dynamics of multiple ecDNA types Disparate pathways for extrachromosomal DNA biogenesis and genomic DNA repair.bioRxiv, 2023

Reference 20

Resolution: verified fuzzy; raw_fallback, observed 2026-08-12T15:15:06.950975Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-13T06:32:02.005865+00:00.

Observation b8c7abea-d198-4226-a377-a7d7653bcc0c · outbound

This paper cites Principles of ecDNA random in- heritance drive rapid genome change and therapy resistance in human cancers.

Population dynamics of multiple ecDNA types Principles of ecDNA random in- heritance drive rapid genome change and therapy resistance in human cancers

Reference 21

Resolution: verified fuzzy; raw_fallback, observed 2026-08-12T15:15:06.937935Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-13T06:32:02.005865+00:00.

Observation 195a7e89-d7dd-4ead-b7af-0b9160e68a9b · outbound

This paper cites The evolutionary dynamics of extrachromosomal DNA in human cancers.

Population dynamics of multiple ecDNA types The evolutionary dynamics of extrachromosomal DNA in human cancers

Reference 22

Resolution: verified fuzzy; raw_fallback, observed 2026-08-12T15:15:06.923491Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-13T06:32:02.005865+00:00.

Observation 8fe5d814-d81c-4684-8bbc-89a9ac489214 · outbound

This paper cites Double minute chromosomes in glioblas- toma multiforme are revealed by precise reconstruction of oncogenic amplicons.

Population dynamics of multiple ecDNA types Double minute chromosomes in glioblas- toma multiforme are revealed by precise reconstruction of oncogenic amplicons

Reference 23

Resolution: verified fuzzy; raw_fallback, observed 2026-08-12T15:15:06.910257Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-13T06:32:02.005865+00:00.

Observation 35097513-4de0-4731-a3f9-5abced69b820 · outbound

This paper cites Plasticity of extrachromosomal and intrachromosomal BRAF amplifications in overcoming targeted therapy dosage challenges.

Population dynamics of multiple ecDNA types Plasticity of extrachromosomal and intrachromosomal BRAF amplifications in overcoming targeted therapy dosage challenges

Reference 24

Resolution: verified fuzzy; raw_fallback, observed 2026-08-12T15:15:06.897142Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-13T06:32:02.005865+00:00.

Observation 9ecb0c39-badc-492e-b454-8458865af63d · outbound

This paper cites Single-cell multimodal glioma analyses identify epigenetic regulators of cellular plasticity and environmental stress response.

Population dynamics of multiple ecDNA types Single-cell multimodal glioma analyses identify epigenetic regulators of cellular plasticity and environmental stress response

Reference 25

Resolution: verified fuzzy; raw_fallback, observed 2026-08-12T15:15:06.884485Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-13T06:32:02.005865+00:00.

Observation 689a2b31-37bd-401a-a78f-89fc89799a7f · outbound

This paper cites Tar- geted profiling of human extrachromosomal DNA by CRISPR-CATCH.Nature Genetics, 54:1746–1754, 2022.

Population dynamics of multiple ecDNA types Tar- geted profiling of human extrachromosomal DNA by CRISPR-CATCH.Nature Genetics, 54:1746–1754, 2022

Reference 26

Resolution: verified fuzzy; raw_fallback, observed 2026-08-12T15:15:06.872121Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-13T06:32:02.005865+00:00.

Observation cb87d405-bbe8-40f3-8293-d5962118ae62 · outbound

This paper cites ecDNA hubs drive cooperative intermolecular oncogene expression.Nature, 600:731–736, 2021.

Population dynamics of multiple ecDNA types ecDNA hubs drive cooperative intermolecular oncogene expression.Nature, 600:731–736, 2021

Reference 27

Resolution: verified fuzzy; raw_fallback, observed 2026-08-12T15:15:06.860588Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-13T06:32:02.005865+00:00.

Observation 8a9d59d6-1894-425a-89e8-6d55377992c2 · outbound

This paper cites Coordinated inheritance of extrachromosomal DNA species in human cancer cells.bioRxiv, 2023.

Population dynamics of multiple ecDNA types Coordinated inheritance of extrachromosomal DNA species in human cancer cells.bioRxiv, 2023

Reference 28

Resolution: verified fuzzy; raw_fallback, observed 2026-08-12T15:15:06.848785Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-13T06:32:02.005865+00:00.

Observation 2bed00a2-97dc-4b70-9f18-a813c1ce904a · outbound

This paper cites Gene regulation on extrachromosomal DNA.

Population dynamics of multiple ecDNA types Gene regulation on extrachromosomal DNA

Reference 29

Resolution: verified fuzzy; raw_fallback, observed 2026-08-12T15:15:06.837738Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-13T06:32:02.005865+00:00.

Observation e01e8956-0be9-4b2f-910c-b4e3b313b28e · outbound

This paper cites Extrachromosomal oncogene amplification drives tumour evo- lution and genetic heterogeneity.Nature, 543:122–125, 2017.

Population dynamics of multiple ecDNA types Extrachromosomal oncogene amplification drives tumour evo- lution and genetic heterogeneity.Nature, 543:122–125, 2017

Reference 31

Resolution: verified fuzzy; raw_fallback, observed 2026-08-12T15:15:06.826067Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-13T06:32:02.005865+00:00.

Observation 16cec187-d1d6-4a97-9d4e-4dc7599c48b8 · outbound

This paper cites Extrachromosomal DNA (ecDNA): an origin of tumor heterogeneity, genomic remodeling, and drug resistance.

Population dynamics of multiple ecDNA types Extrachromosomal DNA (ecDNA): an origin of tumor heterogeneity, genomic remodeling, and drug resistance

Reference 32

Resolution: verified fuzzy; raw_fallback, observed 2026-08-12T15:15:06.807559Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-13T06:32:02.005865+00:00.

Observation 38dff3e2-4f4f-4d61-9b67-e0765ddeb0df · outbound

This paper cites Clonal heterogeneity and tumor evolution: Past, present, and the future.Cell, 168(4):613–628, 2017.

Population dynamics of multiple ecDNA types Clonal heterogeneity and tumor evolution: Past, present, and the future.Cell, 168(4):613–628, 2017

Reference 33

Resolution: verified fuzzy; raw_fallback, observed 2026-08-12T15:15:06.790866Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-13T06:32:02.005865+00:00.

Observation d61b07b6-7ca2-490e-8bcb-81aaca395881 · outbound

This paper cites Extrachromosomal oncogene amplifica- tion in tumour pathogenesis and evolution.Nature Reviews Cancer, 19:283–288, 2019.

Population dynamics of multiple ecDNA types Extrachromosomal oncogene amplifica- tion in tumour pathogenesis and evolution.Nature Reviews Cancer, 19:283–288, 2019

Reference 34

Resolution: verified fuzzy; raw_fallback, observed 2026-08-12T15:15:06.776793Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-13T06:32:02.005865+00:00.

Observation f518a575-ad3a-4d45-8fd6-329a27ac28db · outbound

This paper cites Stochastic simulation of structured skin cell popula- tion dynamics.

Population dynamics of multiple ecDNA types Stochastic simulation of structured skin cell popula- tion dynamics

Reference 35

Resolution: verified fuzzy; raw_fallback, observed 2026-08-12T15:15:06.764806Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-13T06:32:02.005865+00:00.

Observation caa7421b-d623-4871-b5e9-2600c1a6632d · outbound

This paper cites Circular ecDNA promotes accessible chromatin and high oncogene expression.

Population dynamics of multiple ecDNA types Circular ecDNA promotes accessible chromatin and high oncogene expression

Reference 36

Resolution: verified fuzzy; raw_fallback, observed 2026-08-12T15:15:06.751985Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-13T06:32:02.005865+00:00.

Observation 0e9c6886-9e59-474f-a1af-63ec9fab2e46 · outbound

This paper cites Extrachromosomal DNA (ecDNA) in cancer pathogenesis.

Population dynamics of multiple ecDNA types Extrachromosomal DNA (ecDNA) in cancer pathogenesis

Reference 37

Resolution: verified fuzzy; raw_fallback, observed 2026-08-12T15:15:06.740190Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-13T06:32:02.005865+00:00.

Observation e18cfd68-36b1-4194-a126-c6748669eaa5 · outbound

This paper cites Classificationofextrachromosomal circular DNA with a focus on the role of extrachromosomal DNA (ecDNA) in tumor heterogeneity and progression.

Population dynamics of multiple ecDNA types Classificationofextrachromosomal circular DNA with a focus on the role of extrachromosomal DNA (ecDNA) in tumor heterogeneity and progression

Reference 38

Resolution: verified fuzzy; raw_fallback, observed 2026-08-12T15:15:06.725289Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-13T06:32:02.005865+00:00.

Pith citing papers

No inbound Pith citation observations are available.