Typed states for the displayed outbound observations.
Source: paper_references, paper_reference_links, observed 2026-08-12T14:10:49.132921Z
Paper Citation Record · LEDGER
As of 13 August 2026, this Paper Citation Record lists 57 of 57 outbound references and 0 inbound Pith citation observations for arXiv:2411.15618.
A citation records a reference. It does not transfer a finding from one paper to another.
Typed states for the displayed outbound observations.
Source: paper_references, paper_reference_links, observed 2026-08-12T14:10:49.132921Z
One-hop event checks from named stored sources.
Source: scholarly_work_events, retraction_status_cache, observed 2026-08-13T06:32:02.005865+00:00
Pith citing papers itemized under the disclosed page cap.
Source: paper_references, paper_reference_links
A source-named dated measurement, never combined with another source.
Source: cited_works
57 of 57 outbound references displayed
External citation measurements
No source-named external measurement is stored.
Observation e43d5e9f-1c56-43ac-9675-7fd3a2051677 · outbound
Accelerated Hydration Site Localization and Thermodynamic Profiling [11] determination of water structure around biomolecules using x-ray and neutron diffraction methods
Reference 1
Source-reported events for the cited work
No event found in the named queried sources as of 2026-08-13T06:32:02.005865+00:00.
Observation 609aa040-578b-41cc-8382-6484b39811ba · outbound
Accelerated Hydration Site Localization and Thermodynamic Profiling Protein hydration dynamics in solution: a critical survey
Reference 2
Source-reported events for the cited work
No event found in the named queried sources as of 2026-08-13T06:32:02.005865+00:00.
Observation c6e1eeba-7cbc-4ff5-912d-23cf95c4cff8 · outbound
Accelerated Hydration Site Localization and Thermodynamic Profiling Three-dimensional model of purple membrane obtained by electron microscopy
Reference 3
Source-reported events for the cited work
No event found in the named queried sources as of 2026-08-13T06:32:02.005865+00:00.
Observation 0a539bf9-028f-4766-b3c8-630c299d49e1 · outbound
Accelerated Hydration Site Localization and Thermodynamic Profiling The way to nmr structures of proteins
Reference 4
Source-reported events for the cited work
No event found in the named queried sources as of 2026-08-13T06:32:02.005865+00:00.
Observation be95d54a-9e9e-41d1-a4b7-973220f51bdb · outbound
Accelerated Hydration Site Localization and Thermodynamic Profiling The advances and limitations of the determination and applications of water structure in molecular engineering
Reference 5
Source-reported events for the cited work
No event found in the named queried sources as of 2026-08-13T06:32:02.005865+00:00.
Observation 25aa40ce-04fd-47db-8810-6e9c5e9f6ec0 · outbound
Accelerated Hydration Site Localization and Thermodynamic Profiling Three-dimensional density profiles of water in contact with a solute of arbitrary shape: a rism approach
Reference 6
Source-reported events for the cited work
No event found in the named queried sources as of 2026-08-13T06:32:02.005865+00:00.
Observation 2d124ea5-ddb7-49de-b8a8-8a770a60b329 · outbound
Accelerated Hydration Site Localization and Thermodynamic Profiling Self-consistent description of a metal–water interface by the kohn–sham density functional theory and the three-dimensional reference interaction site model
Reference 7
Source-reported events for the cited work
No event found in the named queried sources as of 2026-08-13T06:32:02.005865+00:00.
Observation 4d1bbd4c-fa71-465e-85d1-b1a2a396914e · outbound
Accelerated Hydration Site Localization and Thermodynamic Profiling Water molecules in protein–ligand interfaces
Reference 8
Source-reported events for the cited work
No event found in the named queried sources as of 2026-08-13T06:32:02.005865+00:00.
Observation 9bb5d7cf-4ce5-4816-a341-5f429fe1bd5e · outbound
Accelerated Hydration Site Localization and Thermodynamic Profiling Modelling of solvent positions around polar groups in proteins
Reference 9
Source-reported events for the cited work
No event found in the named queried sources as of 2026-08-13T06:32:02.005865+00:00.
Observation a6ce448d-cf6b-496a-ad7d-f29185c04868 · outbound
Accelerated Hydration Site Localization and Thermodynamic Profiling Evaluating free energies of binding and conservation of crystallographic waters using szmap
Reference 10
Source-reported events for the cited work
No event found in the named queried sources as of 2026-08-13T06:32:02.005865+00:00.
Observation 39c09950-abbd-46fa-9e49-547d20cc823b · outbound
Accelerated Hydration Site Localization and Thermodynamic Profiling High end gpcr design: crafted ligand design and druggability analysis using protein structure, lipophilic hotspots and explicit water networks
Reference 11
Source-reported events for the cited work
No event found in the named queried sources as of 2026-08-13T06:32:02.005865+00:00.
Observation 26b1e11f-fa50-4ab0-ac51-ec39c3dafc10 · outbound
Accelerated Hydration Site Localization and Thermodynamic Profiling A common reference framework for analyzing/comparing proteins and ligands
Reference 12
Source-reported events for the cited work
No event found in the named queried sources as of 2026-08-13T06:32:02.005865+00:00.
Observation c1383f4f-4d4e-4c39-90a8-b78f797c6417 · outbound
Accelerated Hydration Site Localization and Thermodynamic Profiling Acquaalta: a directional approach to the solvation of ligand–protein complexes
Reference 13
Source-reported events for the cited work
No event found in the named queried sources as of 2026-08-13T06:32:02.005865+00:00.
Observation 4a61be52-d096-45d7-94e5-0b14c4502631 · outbound
Accelerated Hydration Site Localization and Thermodynamic Profiling Algorithm for the systematic solvation of proteins based on the directionality of hydrogen bonds
Reference 14
Source-reported events for the cited work
No event found in the named queried sources as of 2026-08-13T06:32:02.005865+00:00.
Observation b8c796d4-9a02-4fe7-aca7-caaa04fba21e · outbound
Accelerated Hydration Site Localization and Thermodynamic Profiling Solvated docking: introducing water into the modelling of biomolecular complexes
Reference 15
Source-reported events for the cited work
No event found in the named queried sources as of 2026-08-13T06:32:02.005865+00:00.
Observation c46d2490-b469-4ccb-aa97-cce1de04d98a · outbound
Accelerated Hydration Site Localization and Thermodynamic Profiling Placement of water molecules in protein structures: from large-scale evaluations to single-case examples
Reference 16
Source-reported events for the cited work
No event found in the named queried sources as of 2026-08-13T06:32:02.005865+00:00.
Observation 7e65f21b-bf83-4f2b-a330-194ddf0573fc · outbound
Accelerated Hydration Site Localization and Thermodynamic Profiling Watgen: an algorithm for modeling water networks at protein–protein interfaces
Reference 17
Source-reported events for the cited work
No event found in the named queried sources as of 2026-08-13T06:32:02.005865+00:00.
Observation cc626ad6-7e63-4736-bb2c-9e581b6f3366 · outbound
Accelerated Hydration Site Localization and Thermodynamic Profiling Prediction of water and metal binding sites and their affinities by using the fold-x force field.Proceedings of the National Academy of Sciences, 102(29):10147–10152, 2005
Reference 18
Source-reported events for the cited work
No event found in the named queried sources as of 2026-08-13T06:32:02.005865+00:00.
Observation 9cb86a10-747a-4d05-8380-27f7c76b292c · outbound
Accelerated Hydration Site Localization and Thermodynamic Profiling Waterdock 2.0: Water placement prediction for holo- structures with a pymol plugin
Reference 19
Source-reported events for the cited work
No event found in the named queried sources as of 2026-08-13T06:32:02.005865+00:00.
Observation f0325a67-67fb-41ff-ae3d-59e8e3b52f03 · outbound
Accelerated Hydration Site Localization and Thermodynamic Profiling Protein pharmacophore selection using hydration-site analysis.Journal of chemical information and modeling, 52(4):1046–1060, 2012
Reference 20
Source-reported events for the cited work
No event found in the named queried sources as of 2026-08-13T06:32:02.005865+00:00.
Observation 581412df-f0db-4dc0-b3b8-7d669eab7f92 · outbound
Accelerated Hydration Site Localization and Thermodynamic Profiling Analysis of factors influencing hydration site prediction based on molecular dynamics simulations
Reference 21
Source-reported events for the cited work
No event found in the named queried sources as of 2026-08-13T06:32:02.005865+00:00.
Observation 00117a78-96a7-472f-92a7-2b897a4b49a3 · outbound
Accelerated Hydration Site Localization and Thermodynamic Profiling Dissecting the influence of protein flexibility on the location and thermodynamic profile of explicit water molecules in protein–ligand binding
Reference 22
Source-reported events for the cited work
No event found in the named queried sources as of 2026-08-13T06:32:02.005865+00:00.
Observation cd8085fb-ded8-461b-b315-bf7d7e7a5b7e · outbound
Accelerated Hydration Site Localization and Thermodynamic Profiling Prediction of the favorable hydration sites in a protein binding pocket and its application to scoring function formulation
Reference 23
Source-reported events for the cited work
No event found in the named queried sources as of 2026-08-13T06:32:02.005865+00:00.
Observation f2bb114e-9d0f-4e97-a915-ce41f0faeaae · outbound
Accelerated Hydration Site Localization and Thermodynamic Profiling Modeling the hydration layer around proteins: Hypred
Reference 24
Source-reported events for the cited work
No event found in the named queried sources as of 2026-08-13T06:32:02.005865+00:00.
Observation 5a1ceb9a-a6a4-42f9-afda-bdd30f985a61 · outbound
Accelerated Hydration Site Localization and Thermodynamic Profiling Exploration of interfacial hydration networks of target–ligand complexes
Reference 25
Source-reported events for the cited work
No event found in the named queried sources as of 2026-08-13T06:32:02.005865+00:00.
Observation 5995a29c-b434-4d83-8148-8cf997bd1ee1 · outbound
Accelerated Hydration Site Localization and Thermodynamic Profiling Mobility-based prediction of hydration structures of protein surfaces
Reference 26
Source-reported events for the cited work
No event found in the named queried sources as of 2026-08-13T06:32:02.005865+00:00.
Observation 44841b11-006c-484b-8ab1-7ee2e92a6251 · outbound
Accelerated Hydration Site Localization and Thermodynamic Profiling Role of the active-site solvent in the thermodynamics of factor xa ligand binding
Reference 27
Source-reported events for the cited work
No event found in the named queried sources as of 2026-08-13T06:32:02.005865+00:00.
Observation 221c1b93-40e7-41da-a418-3f219ae4eda8 · outbound
Accelerated Hydration Site Localization and Thermodynamic Profiling Watsite: Hydration site prediction program with pymol interface, 2014
Reference 28
Source-reported events for the cited work
No event found in the named queried sources as of 2026-08-13T06:32:02.005865+00:00.
Observation 32f6cda6-b422-4acf-88a2-d04e5a2cd330 · outbound
Accelerated Hydration Site Localization and Thermodynamic Profiling Watsite2
Reference 29
Source-reported events for the cited work
No event found in the named queried sources as of 2026-08-13T06:32:02.005865+00:00.
Observation f37df354-96d0-469e-a385-c2e41e741118 · outbound
Accelerated Hydration Site Localization and Thermodynamic Profiling Unresolved cited work
Reference 30
Source-reported events for the cited work
No event found in the named queried sources as of 2026-08-13T06:32:02.005865+00:00.
Observation 9878e221-9629-4451-ab06-7591bcdd58f7 · outbound
Accelerated Hydration Site Localization and Thermodynamic Profiling Galaxywater-cnn: Prediction of water positions on the protein structure by a 3d-convolutional neural network
Reference 31
Source-reported events for the cited work
No event found in the named queried sources as of 2026-08-13T06:32:02.005865+00:00.
Observation f2c548ce-c91f-46bb-8ab5-a1ac2405745e · outbound
Accelerated Hydration Site Localization and Thermodynamic Profiling Hydraprot: A new deep learning tool for fast and accurate prediction of water molecule positions for protein structures
Reference 32
Source-reported events for the cited work
No event found in the named queried sources as of 2026-08-13T06:32:02.005865+00:00.
Observation 7f8f05c9-8729-47d2-8a0a-3afdbe993eb3 · outbound
Accelerated Hydration Site Localization and Thermodynamic Profiling Instantaneous generation of protein hydration properties from static structures
Reference 33
Source-reported events for the cited work
No event found in the named queried sources as of 2026-08-13T06:32:02.005865+00:00.
Observation d04c8350-7743-4b37-8935-ab91533a6326 · outbound
Accelerated Hydration Site Localization and Thermodynamic Profiling Water position prediction with se (3)-graph neural network
Reference 34
Source-reported events for the cited work
No event found in the named queried sources as of 2026-08-13T06:32:02.005865+00:00.
Observation 20d1dedb-a9f3-4ffe-ba8c-c04d84981342 · outbound
Accelerated Hydration Site Localization and Thermodynamic Profiling Superwater: Predicting water molecule positions on protein structures by generative ai
Reference 35
Source-reported events for the cited work
No event found in the named queried sources as of 2026-08-13T06:32:02.005865+00:00.
Observation e0a0bc3a-6e72-4a7c-9b83-61874b8646c9 · outbound
Accelerated Hydration Site Localization and Thermodynamic Profiling Prediction of molecular field points using se(3)-transformer model
Reference 36
Source-reported events for the cited work
No event found in the named queried sources as of 2026-08-13T06:32:02.005865+00:00.
Observation 849f05ce-58b6-4232-b334-5f7cc91ab4ac · outbound
Accelerated Hydration Site Localization and Thermodynamic Profiling Pedregosa, G
Reference 37
Source-reported events for the cited work
Unavailable: canonical work link unavailable.
Observation 7f67c666-7cff-4b47-8e56-472cab8603a0 · outbound
Accelerated Hydration Site Localization and Thermodynamic Profiling Graph attention networks, 2018
Reference 38
Source-reported events for the cited work
Unavailable: canonical work link unavailable.
Observation d53e3a06-3459-480d-ace7-9255261dc0b4 · outbound
Accelerated Hydration Site Localization and Thermodynamic Profiling Efficient and accurate hydration site profiling for enclosed binding sites
Reference 39
Source-reported events for the cited work
No event found in the named queried sources as of 2026-08-13T06:32:02.005865+00:00.
Observation 2126f2fb-a88b-460e-8efe-b9288c87cac0 · outbound
Accelerated Hydration Site Localization and Thermodynamic Profiling The pdbbind database: method- ologies and updates
Reference 40
Source-reported events for the cited work
No event found in the named queried sources as of 2026-08-13T06:32:02.005865+00:00.
Observation 6ea9e8c1-d883-4d30-b571-3594bf47e15f · outbound
Accelerated Hydration Site Localization and Thermodynamic Profiling Comparative assessment of scoring functions: the casf-2016 update
Reference 41
Source-reported events for the cited work
No event found in the named queried sources as of 2026-08-13T06:32:02.005865+00:00.
Observation 8373ee34-14be-490a-ab18-0ef209f4d803 · outbound
Accelerated Hydration Site Localization and Thermodynamic Profiling Mmseqs2 enables sensitive protein sequence searching for the analysis of massive data sets
Reference 42
Source-reported events for the cited work
No event found in the named queried sources as of 2026-08-13T06:32:02.005865+00:00.
Observation 67647498-4fac-4437-98b7-fe580eac5b3c · outbound
Accelerated Hydration Site Localization and Thermodynamic Profiling Protein and ligand preparation: parameters, protocols, and influence on virtual screening enrichments
Reference 43
Source-reported events for the cited work
No event found in the named queried sources as of 2026-08-13T06:32:02.005865+00:00.
Observation 7f7ee6f5-7a12-41aa-ac01-f4c89fa5dd04 · outbound
Accelerated Hydration Site Localization and Thermodynamic Profiling Scalable algorithms for molecular dynam- ics simulations on commodity clusters
Reference 44
Source-reported events for the cited work
No event found in the named queried sources as of 2026-08-13T06:32:02.005865+00:00.
Observation ef125011-c41b-41c7-8b47-7b0d03a9eedc · outbound
Accelerated Hydration Site Localization and Thermodynamic Profiling Vmd: visual molecular dynamics
Reference 45
Source-reported events for the cited work
No event found in the named queried sources as of 2026-08-13T06:32:02.005865+00:00.
Observation 78c77d5a-92c0-4cd8-8cb2-f03be2fcf1ef · outbound
Accelerated Hydration Site Localization and Thermodynamic Profiling Calculation of thermodynamic properties of bound water molecules
Reference 46
Source-reported events for the cited work
No event found in the named queried sources as of 2026-08-13T06:32:02.005865+00:00.
Observation 58f64497-7c58-457f-86f4-771c61df0bba · outbound
Accelerated Hydration Site Localization and Thermodynamic Profiling Mechanisms of disulfide bond formation in nascent polypeptides entering the secretory pathway
Reference 47
Source-reported events for the cited work
No event found in the named queried sources as of 2026-08-13T06:32:02.005865+00:00.
Observation 04fcf1c6-0208-43b5-a1b9-f606368f82a7 · outbound
Accelerated Hydration Site Localization and Thermodynamic Profiling A buried water network modulates the activity of the escherichia coli disulphide catalyst dsba
Reference 48
Source-reported events for the cited work
No event found in the named queried sources as of 2026-08-13T06:32:02.005865+00:00.
Observation e0be03c1-6f95-4bc6-9d5d-e091b11bd3ad · outbound
Accelerated Hydration Site Localization and Thermodynamic Profiling Towards Out-Of-Distribution Generalization: A Survey
Reference 49
Source-reported events for the cited work
Unavailable: canonical work link unavailable.
Observation a2068aaf-0225-4ea2-99cd-cee4ab609502 · outbound
Accelerated Hydration Site Localization and Thermodynamic Profiling The critical role of the loops of triosephosphate isomerase for its oligomerization, dynamics, and functionality
Reference 50
Source-reported events for the cited work
No event found in the named queried sources as of 2026-08-13T06:32:02.005865+00:00.
Observation 549a636f-00c4-452c-b89f-3f7fdcbd7ebd · outbound
Accelerated Hydration Site Localization and Thermodynamic Profiling Accurate structure prediction of biomolecular interactions with alphafold 3
Reference 51
Source-reported events for the cited work
Unavailable: canonical work link unavailable.
Observation adbcd501-ce29-472a-8db2-2874d1116587 · outbound
Accelerated Hydration Site Localization and Thermodynamic Profiling Generalized biomolecular modeling and design with rosettafold all-atom
Reference 52
Source-reported events for the cited work
Unavailable: canonical work link unavailable.
Observation b9ddd726-f510-42a9-811b-a02569d9ac79 · outbound
Accelerated Hydration Site Localization and Thermodynamic Profiling Overcoming the challenges of membrane protein crystallography
Reference 53
Source-reported events for the cited work
No event found in the named queried sources as of 2026-08-13T06:32:02.005865+00:00.
Observation 89bf2a97-5836-4e66-bd48-f04c0816be9f · outbound
Accelerated Hydration Site Localization and Thermodynamic Profiling A guide to membrane protein x-ray crystallography
Reference 54
Source-reported events for the cited work
No event found in the named queried sources as of 2026-08-13T06:32:02.005865+00:00.
Observation b9be1b18-f082-4432-bffa-33b196e992b2 · outbound
Accelerated Hydration Site Localization and Thermodynamic Profiling Clarin-2 is essential for hearing by maintaining stereocilia integrity and function
Reference 55
Source-reported events for the cited work
No event found in the named queried sources as of 2026-08-13T06:32:02.005865+00:00.
Observation 8f2c6e95-fc8f-4324-a51d-e17232f4512c · outbound
Accelerated Hydration Site Localization and Thermodynamic Profiling Clarin-2 gene supplementation durably preserves hearing in a model of progressive hearing loss
Reference 56
Source-reported events for the cited work
No event found in the named queried sources as of 2026-08-13T06:32:02.005865+00:00.
Observation eb1aeca6-f309-4d8f-a240-31263ed04996 · outbound
Accelerated Hydration Site Localization and Thermodynamic Profiling ground truth
Reference 57
Source-reported events for the cited work
No event found in the named queried sources as of 2026-08-13T06:32:02.005865+00:00.
No inbound Pith citation observations are available.