Paper Citation Record · LEDGER

Virtual Cells: Predict, Explain, Discover

As of 21 August 2026, this Paper Citation Record lists 26 of 26 outbound references and 2 inbound Pith citation observations for arXiv:2505.14613.

A citation records a reference. It does not transfer a finding from one paper to another.

pith.paper-citation-record.v1
2505.14613 v3

Coverage vector

measured 26 of 26 reference resolution

Typed states for the displayed outbound observations.

Source: paper_references, paper_reference_links, observed 2026-08-07T15:34:08.034431Z

measured 28 of 28 standing notices

One-hop event checks from named stored sources.

Source: scholarly_work_events, retraction_status_cache, observed 2026-08-21T06:32:19.484+00:00

measured 2 of 2 inbound itemization

Pith citing papers itemized under the disclosed page cap.

Source: paper_references, paper_reference_links, observed 2026-06-27T18:31:59.962779Z

measured 0 of 1 external citation measurements

A source-named dated measurement, never combined with another source.

Source: arxiv_reference, observed 2026-07-04T10:39:45.688821Z

Reference resolution

26 of 26 outbound references displayed

verified exact3
verified fuzzy6
unresolved16
parse uncertain0
malformed identifier1
metadata mismatch0

External citation measurements

No source-named external measurement is stored.

Outbound references

Observation 55bd4abc-09b0-4ec7-b0e2-fcf850664759 · outbound

This paper cites URL https://doi.org/10.

Virtual Cells: Predict, Explain, Discover URL https://doi.org/10

Reference 3

Resolution: unresolved; no resolver link, observed 2026-08-07T15:34:05.036947Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation cd51f9fe-82c4-4e95-896c-e1bc2103bd29 · outbound

This paper cites doi: https://doi.org/10.1016/j.shpsc.2016.02.002.

Virtual Cells: Predict, Explain, Discover doi: https://doi.org/10.1016/j.shpsc.2016.02.002

Reference 8

Resolution: verified exact; doi, observed 2026-08-07T15:34:08.545442Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-21T06:32:19.484+00:00.

Observation 08b2880d-febc-4e9a-a6bf-71999e67ed86 · outbound

This paper cites 01.600583.

Virtual Cells: Predict, Explain, Discover 01.600583

Reference 9

Resolution: unresolved; no resolver link, observed 2026-08-07T15:34:05.763073Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation 86e336cc-4dfa-44e3-a007-d28df26d5c81 · outbound

This paper cites Generative Modeling of Molecular Dynamics Trajectories.

Virtual Cells: Predict, Explain, Discover Generative Modeling of Molecular Dynamics Trajectories

Reference 10

Resolution: unresolved; no resolver link, observed 2026-08-07T15:34:05.880498Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation d4ac9af6-3fcb-4937-90a4-10c66ae7f0b8 · outbound

This paper cites doi: 10.15252/msb.202211517.

Virtual Cells: Predict, Explain, Discover doi: 10.15252/msb.202211517

Reference 12

Resolution: unresolved; no resolver link, observed 2026-08-07T15:34:06.179640Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation 65108c4d-f468-4303-bd56-8e05f1e936f8 · outbound

This paper cites Egret-1: Pretrained Neural Network Potentials for Efficient and Accurate Bioorganic Simulation.

Virtual Cells: Predict, Explain, Discover Egret-1: Pretrained Neural Network Potentials for Efficient and Accurate Bioorganic Simulation

Reference 13

Resolution: unresolved; no resolver link, observed 2026-08-07T15:34:06.320370Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation c08e3234-4cf6-4a8e-bfd7-d174eca6ed0e · outbound

This paper cites S., Lane, L., Overall, C.

Virtual Cells: Predict, Explain, Discover S., Lane, L., Overall, C

Reference 14

Resolution: verified fuzzy; raw_fallback, observed 2026-08-07T15:34:09.863519Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-21T06:32:19.484+00:00.

Observation 36b5ae3a-9b96-4243-902c-135ed1435c5d · outbound

This paper cites doi: 10.1021/acs.jproteome.3c00591.

Virtual Cells: Predict, Explain, Discover doi: 10.1021/acs.jproteome.3c00591

Reference 15

Resolution: verified exact; doi, observed 2026-08-07T15:34:08.320097Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-21T06:32:19.484+00:00.

Observation 91627f4e-a8be-4097-9065-d9611c3d2d91 · outbound

This paper cites doi: 10.1093/nar/gkae1142.

Virtual Cells: Predict, Explain, Discover doi: 10.1093/nar/gkae1142

Reference 16

Resolution: unresolved; no resolver link, observed 2026-08-07T15:34:06.758000Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation dc6e97b4-9825-4691-9721-f291b38c483e · outbound

This paper cites The Human Cell Atlas White Paper.

Virtual Cells: Predict, Explain, Discover The Human Cell Atlas White Paper

Reference 17

Resolution: unresolved; no resolver link, observed 2026-08-07T15:34:06.890821Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation adcd2392-7420-44a6-95fe-f641bf3b487e · outbound

This paper cites doi: 10.1038/s41587-023-01905-6.

Virtual Cells: Predict, Explain, Discover doi: 10.1038/s41587-023-01905-6

Reference 18

Resolution: unresolved; no resolver link, observed 2026-08-07T15:34:06.974598Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation d158c28c-6ed1-4979-a523-ce91b78109da · outbound

This paper cites Goal-conditioned GFlowNets for Controllable Multi-Objective Molecular Design.

Virtual Cells: Predict, Explain, Discover Goal-conditioned GFlowNets for Controllable Multi-Objective Molecular Design

Reference 19

Resolution: unresolved; no resolver link, observed 2026-08-07T15:34:07.116039Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation 6952f570-1889-483d-83e5-3e75d3243717 · outbound

This paper cites Modeling and predicting single-cell multi-gene perturbation responses with sclambda.

Virtual Cells: Predict, Explain, Discover Modeling and predicting single-cell multi-gene perturbation responses with sclambda

Reference 21

Resolution: verified fuzzy; raw_fallback, observed 2026-08-07T15:34:09.610202Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-21T06:32:19.484+00:00.

Observation f4f8220a-fac4-4849-81d9-6c3881020d4a · outbound

This paper cites Generative artificial intelligence for de novo protein design.

Virtual Cells: Predict, Explain, Discover Generative artificial intelligence for de novo protein design

Reference 22

Resolution: unresolved; no resolver link, observed 2026-08-07T15:34:07.540416Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation 4447f939-eaf1-4016-a40f-65a1ec2126ff · outbound

This paper cites Boltz-1: Democratizing biomolecular interaction modeling.

Virtual Cells: Predict, Explain, Discover Boltz-1: Democratizing biomolecular interaction modeling

Reference 23

Resolution: verified fuzzy; raw_fallback, observed 2026-08-07T15:34:09.336141Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-21T06:32:19.484+00:00.

Observation c94a65c3-5072-4980-99e5-2b1a9daaa1a6 · outbound

This paper cites A., Borja, R.

Virtual Cells: Predict, Explain, Discover A., Borja, R

Reference 24

Resolution: unresolved; no resolver link, observed 2026-08-07T15:34:07.774461Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation 71d1716b-348c-4ea4-ac20-6152b3d875f0 · outbound

This paper cites Automated Discovery of Pairwise Interactions from Unstructured Data.

Virtual Cells: Predict, Explain, Discover Automated Discovery of Pairwise Interactions from Unstructured Data

Reference 25

Resolution: unresolved; no resolver link, observed 2026-08-07T15:34:07.896135Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation 5dc99923-48cc-4861-8e73-b3fb337bbb0b · outbound

This paper cites doi: 10.1007/s10838-009-9091-3.

Virtual Cells: Predict, Explain, Discover doi: 10.1007/s10838-009-9091-3

Reference 2009

Resolution: verified exact; doi, observed 2026-08-07T15:34:08.771137Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-21T06:32:19.484+00:00.

Observation 185591dd-277a-400e-879d-01e3d4eaf9fc · outbound

This paper cites On the Scalability of GNNs for Molecular Graphs.

Virtual Cells: Predict, Explain, Discover On the Scalability of GNNs for Molecular Graphs

Reference 2011

Resolution: unresolved; no resolver link, observed 2026-08-07T15:34:07.250732Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation b41fa4a4-bd47-474f-9f21-1bc22ff31d72 · outbound

This paper cites S., Bobrovskiy, D., Zimmermann, L., Becker, S., Palma, A., Dony, L., Tejada- Lapuerta, A., Huguet, G., Lin, H.-C., et al.

Virtual Cells: Predict, Explain, Discover S., Bobrovskiy, D., Zimmermann, L., Becker, S., Palma, A., Dony, L., Tejada- Lapuerta, A., Huguet, G., Lin, H.-C., et al

Reference 2012

Resolution: verified fuzzy; raw_fallback, observed 2026-08-07T15:34:10.093900Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-21T06:32:19.484+00:00.

Observation e114968d-d03a-43fb-bf4c-c6910aa03f50 · outbound

This paper cites doi: 10.1088/0953-8984/ 28/39/393001.

Virtual Cells: Predict, Explain, Discover doi: 10.1088/0953-8984/ 28/39/393001

Reference 2016

Resolution: malformed identifier; no resolver link, observed 2026-08-07T15:34:05.156748Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation 557e8a8c-67ca-4e14-b9f0-e4790ec03acd · outbound

This paper cites an unresolved cited work.

Virtual Cells: Predict, Explain, Discover Unresolved cited work

Reference 2018

Resolution: unresolved; raw_fallback, observed 2026-08-07T15:34:09.124045Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-21T06:32:19.484+00:00.

Observation e67667ad-6054-4eaf-af5f-5a5c405f6f7e · outbound

This paper cites Benchmarking Transcriptomics Foundation Models for Perturbation Analysis : one PCA still rules them all.

Virtual Cells: Predict, Explain, Discover Benchmarking Transcriptomics Foundation Models for Perturbation Analysis : one PCA still rules them all

Reference 2021

Resolution: unresolved; no resolver link, observed 2026-08-07T15:34:04.764682Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation 65df31ef-20ef-44da-bd73-4e88b0881d80 · outbound

This paper cites URL https://www.biorxiv.org/content/early/2023/02/08/2023.02.07.527350.

Virtual Cells: Predict, Explain, Discover URL https://www.biorxiv.org/content/early/2023/02/08/2023.02.07.527350

Reference 2023

Resolution: unresolved; no resolver link, observed 2026-08-07T15:34:05.524434Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation dd3cd4c9-9c65-4e10-9408-d8615eace008 · outbound

This paper cites Chai-1: Decoding the molecular interactions of life.

Virtual Cells: Predict, Explain, Discover Chai-1: Decoding the molecular interactions of life

Reference 2024

Resolution: verified fuzzy; raw_fallback, observed 2026-08-07T15:34:10.514026Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-21T06:32:19.484+00:00.

Observation 570b488a-0fc6-4684-b81e-c23c41065d33 · outbound

This paper cites net/forum?id=uvHmnahyp1.

Virtual Cells: Predict, Explain, Discover net/forum?id=uvHmnahyp1

Reference 2025

Resolution: verified fuzzy; raw_fallback, observed 2026-08-07T15:34:10.335700Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-21T06:32:19.484+00:00.

Pith citing papers

Observation 79a462b3-b344-46bf-8af7-ced70a43e9a6 · inbound

Knowledge Graphs and Reasoning LLMs for Finding Simple Yet Effective Transcriptomic Perturbation Predictors cites this paper.

Knowledge Graphs and Reasoning LLMs for Finding Simple Yet Effective Transcriptomic Perturbation Predictors Virtual Cells: Predict, Explain, Discover

Reference 14

Resolution: verified exact; arxiv_id, observed 2026-07-02T22:57:26.518195Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-21T06:32:19.484+00:00.

Observation 383ef031-a491-4bb4-bc5e-209ac05db28c · inbound

Catastrophic Compositional Generation: Why Vanilla Diffusion Models Fail to Extrapolate cites this paper.

Catastrophic Compositional Generation: Why Vanilla Diffusion Models Fail to Extrapolate Virtual Cells: Predict, Explain, Discover

Reference 51

Resolution: verified exact; arxiv_id, observed 2026-07-04T10:39:45.690374Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-21T06:32:19.484+00:00.