Structural Identifiability and Discrete Symmetries
Pith reviewed 2026-05-19 03:28 UTC · model grok-4.3
The pith
Discrete symmetries in system equations cause parameters to be identifiable only locally, not globally.
A machine-rendered reading of the paper's core claim, the machinery that carries it, and where it could break.
Core claim
Discrete symmetries are the origin of parameters which are structurally locally identifiable, but not globally. We exploit this fact to present a methodology for structural identifiability analysis that detects such parameters and characterizes the symmetries in which they are involved. We demonstrate the use of our methodology by applying it to four case studies.
What carries the argument
A symmetry-based methodology that detects discrete symmetries from the system equations alone and uses them to identify parameters that are locally but not globally structurally identifiable.
If this is right
- Parameters involved in discrete symmetries will be structurally locally identifiable but not globally identifiable.
- The methodology will characterize the precise discrete symmetries linked to each such parameter.
- The same symmetry analysis extends to structural observability questions in control systems.
- The approach requires no external data beyond the model equations themselves.
Where Pith is reading between the lines
- Experiment design could deliberately break discrete symmetries to convert local identifiability into global identifiability.
- Symmetry detection may offer a route to reduce model complexity by collapsing equivalent parameter sets.
- The framework could be tested on larger networks or stochastic variants to check scalability.
Load-bearing premise
Discrete symmetries can be reliably identified and exploited for identifiability analysis using only the system equations without requiring additional external data or assumptions about their specific form.
What would settle it
A control system in which a parameter is locally but not globally identifiable yet possesses no discrete symmetries would disprove the claimed origin of the identifiability gap.
read the original abstract
We discuss the use of symmetries for analysing the structural identifiability and observability of control systems. Special emphasis is put on the role of discrete symmetries, in contrast to the more commonly studied continuous or Lie symmetries. We argue that discrete symmetries are the origin of parameters which are structurally locally identifiable, but not globally. We exploit this fact to present a methodology for structural identifiability analysis that detects such parameters and characterizes the symmetries in which they are involved. We demonstrate the use of our methodology by applying it to four case studies.
Editorial analysis
A structured set of objections, weighed in public.
Referee Report
Summary. The manuscript presents a methodology for structural identifiability analysis of control systems that exploits discrete symmetries. The central claim is that discrete symmetries lead to parameters that are structurally locally identifiable but not globally identifiable. The authors develop a method to detect such parameters and characterize the involved symmetries using only the system equations, and demonstrate it on four case studies.
Significance. If the proposed methodology can autonomously identify discrete symmetries from the system equations and correctly characterize the associated identifiability issues, this would represent a useful advance in the field of structural identifiability for dynamical systems. It shifts focus from continuous Lie symmetries to discrete ones, which are relevant for many practical systems involving sign changes or permutations. The case studies provide initial evidence of applicability, though broader validation would be beneficial.
major comments (2)
- [§3] §3 (Methodology): The procedure for detecting discrete symmetries is not shown to generate candidate transformations (e.g., sign flips or permutations) systematically from the equations alone. If it instead requires the user to supply or suspect a list of candidates, the claim that the method 'detects such parameters and characterizes the symmetries' using only the system equations is undermined.
- [Case studies] Case studies (all four): Each example uses low-order discrete symmetries that are apparent once the equations are written. This does not yet demonstrate that the method discovers non-obvious symmetries in higher-dimensional or less transparent systems, which is load-bearing for the generality of the central claim.
minor comments (2)
- [Abstract] Abstract: The statement that the methodology works 'using only the system equations' could be qualified by noting the class of discrete symmetries considered (finite groups of sign changes, permutations, etc.).
- [Notation] Notation section: Define the action of a discrete symmetry on the parameter vector more explicitly, perhaps with a small example table, to aid readers bridging identifiability and symmetry literature.
Simulated Author's Rebuttal
We are grateful to the referee for their constructive feedback on our manuscript. We have carefully considered the major comments and provide point-by-point responses below. Where appropriate, we have revised the manuscript to address the concerns raised.
read point-by-point responses
-
Referee: [§3] §3 (Methodology): The procedure for detecting discrete symmetries is not shown to generate candidate transformations (e.g., sign flips or permutations) systematically from the equations alone. If it instead requires the user to supply or suspect a list of candidates, the claim that the method 'detects such parameters and characterizes the symmetries' using only the system equations is undermined.
Authors: We thank the referee for highlighting this important point regarding the systematic nature of our methodology. In the manuscript, Section 3 describes how discrete symmetries are detected by solving the invariance conditions derived directly from the system equations. Specifically, we set up the equations that a transformation must satisfy to leave the dynamics invariant and solve for the transformation parameters. This algebraic procedure generates the possible discrete symmetries from the equations without requiring the user to pre-specify candidates beyond considering the possible types of discrete transformations relevant to the system (such as sign changes for parameters that can be positive or negative). To make this clearer, we will revise Section 3 to include a step-by-step algorithmic outline of the detection procedure. revision: yes
-
Referee: [Case studies] Case studies (all four): Each example uses low-order discrete symmetries that are apparent once the equations are written. This does not yet demonstrate that the method discovers non-obvious symmetries in higher-dimensional or less transparent systems, which is load-bearing for the generality of the central claim.
Authors: The case studies were selected to provide clear and accessible illustrations of how discrete symmetries lead to parameters that are locally but not globally identifiable. While the symmetries in these examples are indeed relatively straightforward, they serve to validate the methodology on concrete systems where the identifiability issues can be verified independently. The methodology itself is general and does not depend on the symmetries being obvious; it applies the same algebraic procedure regardless of system dimension. We agree that additional examples in higher dimensions would further support the generality, and we will include a brief discussion of potential extensions to more complex systems in the revised manuscript. revision: partial
Circularity Check
No circularity: derivation builds on standard symmetry-identifiability link without reduction to inputs
full rationale
The paper argues that discrete symmetries produce locally but not globally identifiable parameters and then presents a methodology to detect both using the system equations. No quoted step shows a prediction or result that equals its own fitted input or prior self-citation by construction. The four case studies apply the procedure to concrete systems, but the central logic remains independent of the target outputs and does not rely on enumerating pre-supplied symmetries as a hidden assumption. The derivation is therefore self-contained against external benchmarks.
Axiom & Free-Parameter Ledger
Lean theorems connected to this paper
-
IndisputableMonolith/Foundation/AbsoluteFloorClosure.leanreality_from_one_distinction unclear?
unclearRelation between the paper passage and the cited Recognition theorem.
We will follow an approach proposed by Reid et al. [27] and work with the finite determining system instead of the infinitesimal one... Thomas decomposition
-
IndisputableMonolith/Foundation/AlexanderDuality.leanalexander_duality_circle_linking unclear?
unclearRelation between the paper passage and the cited Recognition theorem.
discrete symmetries are the origin of parameters which are structurally locally identifiable, but not globally
What do these tags mean?
- matches
- The paper's claim is directly supported by a theorem in the formal canon.
- supports
- The theorem supports part of the paper's argument, but the paper may add assumptions or extra steps.
- extends
- The paper goes beyond the formal theorem; the theorem is a base layer rather than the whole result.
- uses
- The paper appears to rely on the theorem as machinery.
- contradicts
- The paper's claim conflicts with a theorem or certificate in the canon.
- unclear
- Pith found a possible connection, but the passage is too broad, indirect, or ambiguous to say the theorem truly supports the claim.
Reference graph
Works this paper leans on
-
[1]
Minimal output sets for identifiability
Milena Anguelova, Johan Karlsson, and Mats Jirstrand. Minimal output sets for identifiability. Mathematical biosciences, 239(1):139–153, 2012
work page 2012
-
[2]
T. B¨ achler, V.P. Gerdt, M. Lange-Hegermann, and D. Robertz. Algorith- mic Thomas decomposition of algebraic and differential systems. J. Symb. Comp., 47:1233–1266, 2012
work page 2012
-
[3]
G.W. Bluman and S. Kumei. Symmetries and Differential Equations . Ap- plied Mathematical Sciences 81. Springer-Verlag, New York, 1989
work page 1989
-
[4]
F. Boulier, D. Lazard, F. Ollivier, and M. Petitot. Representation for the radical of a finitely generated differential ideal. In A.H.M. Levelt, editor, Proc. ISSAC ’95, pages 158–166. ACM Press, New York, 1995
work page 1995
-
[5]
F. Boulier, D. Lazard, F. Ollivier, and M. Petitot. Computing representa- tions for radicals of finitely generated differential ideals. Appl. Alg. Eng. Comm. Comp., 20:73–121, 2009
work page 2009
-
[6]
Testing structural identifiability by a simple scaling method
Mario Castro and Rob J De Boer. Testing structural identifiability by a simple scaling method. PLOS Computational Biology , 16(11):e1008248, 2020
work page 2020
-
[7]
On the observ- ability and identifiability of nonlinear structural and mechanical systems
Manolis N Chatzis, Eleni N Chatzi, and Andrew W Smyth. On the observ- ability and identifiability of nonlinear structural and mechanical systems. Structural Control and Health Monitoring , 22(3):574–593, 2015
work page 2015
-
[8]
Parameter identifiability of linear-compartmental mammillary models
Katherine Clemens, Jonathan Martinez, Anne Shiu, Michaela Thompson, and Benjamin Warren. Parameter identifiability of linear-compartmental mammillary models. arXiv preprint arXiv:2506.21889 , 2025. 11
-
[9]
Ruiwen Dong, Christian Goodbrake, Heather A Harrington, and Gleb Pogudin. Differential elimination for dynamical models via projections with applications to structural identifiability. SIAM Journal on Applied Algebra and Geometry, 7(1):194–235, 2023
work page 2023
-
[10]
G. Gaeta and M.A. Rodr´ ıguez. Discrete symmetries of differential equa- tions. J. Phys. A: Math. Gen. , 29:859–880, 1996
work page 1996
-
[11]
V.P. Gerdt. On decomposition of algebraic PDE systems into simple sub- systems. Acta Appl. Math. , 101:39–51, 2008
work page 2008
- [12]
-
[13]
Brian C. Goodwin. Oscillatory behavior in enzymatic control processes. Advances in Enzyme Regulation, 3:425–437, 1965
work page 1965
-
[14]
Sian: soft- ware for structural identifiability analysis of ode models
Hoon Hong, Alexey Ovchinnikov, Gleb Pogudin, and Chee Yap. Sian: soft- ware for structural identifiability analysis of ode models. Bioinformatics, 35(16):2873–2874, 2019
work page 2019
-
[15]
P.E. Hydon. Discrete point symmetries of ordinary differential equations. Proc. Royal Soc.: Math. Phys. Eng. Sci. , 454:1961–1972, 1998
work page 1961
-
[16]
N. Ibragimov, M. Torrisi, and A. Valenti, editors. Proc. Modern Group Analysis: Advanced Analytical and Computational Methods in Mathemati- cal Physics. Kluwer, Dordrecht, 1993
work page 1993
-
[17]
M. Lange-Hegermann. Counting Solutions of Differential Equations . PhD thesis, RWTH Aachen, Germany, 2014. Available at http://darwin.bth. rwth-aachen.de/opus3/frontdoor.php?source_opus=4993
work page 2014
-
[18]
M. Lange-Hegermann. The differential counting polynomial. Found. Comp. Math., 18:291–308, 2018
work page 2018
-
[19]
Y. Lecourtier, F. Lamnabhi-Lagarrigue, and E. Walter. A method to prove that nonlinear models can be unidentifiable. In Proc. 26th IEEE Conf. Decision Control, pages 2144–2145, 1987
work page 1987
-
[20]
Gemma Massonis, Julio R Banga, and Alejandro F Villaverde. Autorepar: a method to obtain identifiable and observable reparameterizations of dy- namic models with mechanistic insights. International Journal of Robust and Nonlinear Control, 33(9):5039–5057, 2023
work page 2023
-
[21]
Gemma Massonis and Alejandro F Villaverde. Finding and breaking Lie symmetries: Implications for structural identifiability and observability in biological modelling. Symmetry, 12:469, 2020
work page 2020
-
[22]
Higher-order Lie symmetries in identifiability and predictability analysis of dynamic models
Benjamin Merkt, Jens Timmer, and Daniel Kaschek. Higher-order Lie symmetries in identifiability and predictability analysis of dynamic models. Physical Review E, 92(1):012920, 2015. 12
work page 2015
-
[23]
N. Meshkat, C.E. Kuo, and J. DiStefano III. On finding and using identifi- able parameter combinations in nonlinear dynamic systems biology models and COMBOS: A novel web implementation. PLOS One, 9:e110261, 2014
work page 2014
-
[24]
Structural identifiability of compart- mental models: Recent progress and future directions
Nicolette Meshkat and Anne Shiu. Structural identifiability of compart- mental models: Recent progress and future directions. arXiv preprint arXiv:2507.04496, 2025
-
[25]
Identifiable reparametrizations of linear compartment models
Nicolette Meshkat and Seth Sullivant. Identifiable reparametrizations of linear compartment models. Journal of Symbolic Computation , 63:46–67, 2014
work page 2014
-
[26]
P.J. Olver. Applications of Lie Groups to Differential Equations . Graduate Texts in Mathematics 107. Springer-Verlag, New York, 1986
work page 1986
- [27]
- [28]
-
[29]
On the origins and rarity of locally but not globally identifiable parameters in biological modeling
Xabier Rey Barreiro and Alejandro F Villaverde. On the origins and rarity of locally but not globally identifiable parameters in biological modeling. IEEE Access, 11, 2023
work page 2023
-
[30]
D. Robertz. Formal Algorithmic Elimination for PDEs , volume 2121 of Lecture Notes in Mathematics . Springer-Verlag, Cham, 2014
work page 2014
-
[31]
K. Schlacher, A. Kugi, and K. Zehetleitner. A Lie-group approach for non- linear dynamic systems described by implicit ordinary differential equa- tions. In Proc. Mathematical Theory of Network and Systems (MTNS) , 2002
work page 2002
-
[32]
J. Sch¨ u, W.M. Seiler, and J. Calmet. Algorithmic methods for Lie pseu- dogroups. In Ibragimov et al. [16], pages 337–344
-
[33]
F. Schwarz. An algorithm for determining the size of symmetry groups. Comp., 49:95–115, 1992
work page 1992
-
[34]
A probabilistic algorithm to test local algebraic observability in polynomial time
Alexandre Sedoglavic. A probabilistic algorithm to test local algebraic observability in polynomial time. Journal of Symbolic Computation , 33(5):735–755, 2002
work page 2002
-
[35]
W.M. Seiler. On the arbitrariness of the general solution of an involutive partial differential equation. J. Math. Phys. , 35:486–498, 1994
work page 1994
-
[36]
W.M. Seiler. Arbitrariness of the general solution and symmetries. Acta Appl. Math., 41:311–322, 1995
work page 1995
-
[37]
W.M. Seiler. Involution and symmetry reductions. Math. Comp. Model. , 25:63–73, 1997. 13
work page 1997
-
[38]
W.M. Seiler. Involution — The Formal Theory of Differential Equations and its Applications in Computer Algebra . Algorithms and Computation in Mathematics 24. Springer-Verlag, Berlin, 2010
work page 2010
-
[39]
W.M. Seiler and E. Zerz. Algebraic theory of linear systems: A survey. In A. Ilchmann and T. Reis, editors, Surveys in Differential-Algebraic Equa- tions II, Differential-Algebraic Equations Forum, pages 287–333. Springer- Verlag, 2015
work page 2015
-
[40]
W.Y. Sit. The Ritt-Kolchin theory for differential polynomials. In L. Guo, W.F. Keigher, P.J. Cassedy, and W.Y. Sit, editors,Differential Algebra and Related Topics, pages 1–70. World Scientific, 2002
work page 2002
-
[41]
J.M. Thomas. Differential Systems. Colloquium Publications XXI. Amer- ican Mathematical Society, New York, 1937
work page 1937
-
[42]
J.M. Thomas. Systems and Roots. W. Byrd Press, 1962
work page 1962
-
[43]
Symmetries in dynamic models of biological sys- tems: Mathematical foundations and implications
Alejandro F Villaverde. Symmetries in dynamic models of biological sys- tems: Mathematical foundations and implications. Symmetry, 14(3):467, 2022
work page 2022
-
[44]
Observability and structural identifiability of nonlinear biological systems
Alejandro F Villaverde et al. Observability and structural identifiability of nonlinear biological systems. Complexity, 2019, 2019
work page 2019
-
[45]
Alejandro F Villaverde and Gemma Massonis. On testing structural iden- tifiability by a simple scaling method: relying on scaling symmetries can be misleading. PLoS Computational Biology, 17(10):e1009032, 2021
work page 2021
-
[46]
Structural iden- tifiability analysis via symmetries of differential equations
James WT Yates, Neil D Evans, and Michael J Chappell. Structural iden- tifiability analysis via symmetries of differential equations. Automatica, 45(11):2585–2591, 2009
work page 2009
-
[47]
K. Zehetleitner. A Geometric Approach to Equivalence Problems for Im- plicit Dynamic Systems . PhD thesis, Johannes Kepler Universit¨ at Linz, 2005
work page 2005
-
[48]
K. Zehetleitner and K. Schlacher. Computer algebra algorithms for the test on accessibility and observability for implicit dynamical systems. In Proc. 2003 European Control Conference (ECC), pages 282–287. IEEE, 2003
work page 2003
-
[49]
W.-T. Zha, F.-R. Pang, N. Zhou, B. Wu, Y. Liu, Y.-B. Du, X.-Q. Hong, and Y. Lv. Research about the optimal strategies for prevention and control of varicella outbreak in a school in a central city of China: Based on an SEIR dynamic model. Epidemiol. Infection, 148:e56, 2020. 14
work page 2020
discussion (0)
Sign in with ORCID, Apple, or X to comment. Anyone can read and Pith papers without signing in.