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Paper Citation Record · LEDGER

Controllable 3D Molecular Generation for Structure-Based Drug Design Through Bayesian Flow Networks and Gradient Integration

As of 7 August 2026, this Paper Citation Record lists 57 of 57 outbound references and 1 inbound Pith citation observation for arXiv:2508.21468.

A citation records a reference. It does not transfer a finding from one paper to another.

pith.paper-citation-record.v1
2508.21468 v1

Coverage vector

measured 57 of 57 reference resolution

Typed states for the displayed outbound observations.

Source: paper_references, paper_reference_links, observed 2026-08-05T14:25:31.339421Z

measured 58 of 58 standing notices

One-hop event checks from named stored sources.

Source: scholarly_work_events, retraction_status_cache, observed 2026-08-07T06:34:17.273281+00:00

measured 1 of 1 inbound itemization

Pith citing papers itemized under the disclosed page cap.

Source: paper_references, paper_reference_links, observed 2026-06-28T15:56:09.312666Z

measured 0 of 1 external citation measurements

A source-named dated measurement, never combined with another source.

Source: arxiv_reference, observed 2026-07-01T21:56:16.227901Z

Reference resolution

57 of 57 outbound references displayed

  • verified exact2
  • verified fuzzy38
  • unresolved16
  • parse uncertain0
  • malformed identifier1
  • metadata mismatch0

External citation measurements

No source-named external measurement is stored.

Outbound references

Observation a3d9517c-6948-408d-8383-7af5eb2e1754 · outbound

This paper cites Accurate structure prediction of biomolecular interactions with alphafold 3.

Controllable 3D Molecular Generation for Structure-Based Drug Design Through Bayesian Flow Networks and Gradient Integration Accurate structure prediction of biomolecular interactions with alphafold 3

Reference 1

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no resolver link, observed 2026-08-05T14:25:26.514834Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

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Observation 4bacf021-a84d-40a9-9ea6-43e7e510f6ef · outbound

This paper cites Protein sequence modelling with bayesian flow networks.

Controllable 3D Molecular Generation for Structure-Based Drug Design Through Bayesian Flow Networks and Gradient Integration Protein sequence modelling with bayesian flow networks

Reference 2

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verified fuzzy
raw_fallback, observed 2026-08-05T14:25:35.922485Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-07T06:34:17.273281+00:00.

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Observation 3c3e4d77-9c29-4f60-b393-0b2981d5b957 · outbound

This paper cites Geometric deep learning methods and applications in 3d structure-based drug design.

Controllable 3D Molecular Generation for Structure-Based Drug Design Through Bayesian Flow Networks and Gradient Integration Geometric deep learning methods and applications in 3d structure-based drug design

Reference 3

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verified fuzzy
raw_fallback, observed 2026-08-05T14:25:35.910875Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-07T06:34:17.273281+00:00.

source=pdf_text observed=2026-08-05T14:25:26.619168Z digest=sha256:2671561eb82b16af701e75aa5c639d86a80cf1ad98e921d6f14b88a941d446e8

Observation 318f2416-f1ab-4dc7-a27b-fe65ae3fcb43 · outbound

This paper cites Equivariant Energy-Guided SDE for Inverse Molecular Design.

Controllable 3D Molecular Generation for Structure-Based Drug Design Through Bayesian Flow Networks and Gradient Integration Equivariant Energy-Guided SDE for Inverse Molecular Design

Reference 4

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no resolver link, observed 2026-08-05T14:25:26.697348Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

source=pdf_text observed=2026-08-05T14:25:26.697348Z digest=sha256:f1501467063b9768b6534482e80175113cf817a5d4fa05a3004c298204c417b8

Observation b6f900e0-c1be-483d-9404-e370738b467c · outbound

This paper cites Posebusters: Ai-based docking methods fail to generate physically valid poses or generalise to novel sequences.

Controllable 3D Molecular Generation for Structure-Based Drug Design Through Bayesian Flow Networks and Gradient Integration Posebusters: Ai-based docking methods fail to generate physically valid poses or generalise to novel sequences

Reference 5

Resolution
verified fuzzy
raw_fallback, observed 2026-08-05T14:25:35.899307Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-07T06:34:17.273281+00:00.

source=pdf_text observed=2026-08-05T14:25:26.763247Z digest=sha256:5f80458240987fb1026f1f1697967b5d3eecb09654dd7dfc03a04a93fe0fe632

Observation 98ef91fa-49af-4542-ba35-b0d28b6a0347 · outbound

This paper cites Pid- iff: Physics informed diffusion model for protein pocket-specific 3d molecular generation.

Controllable 3D Molecular Generation for Structure-Based Drug Design Through Bayesian Flow Networks and Gradient Integration Pid- iff: Physics informed diffusion model for protein pocket-specific 3d molecular generation

Reference 6

Resolution
verified fuzzy
raw_fallback, observed 2026-08-05T14:25:35.888082Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-07T06:34:17.273281+00:00.

source=pdf_text observed=2026-08-05T14:25:26.841297Z digest=sha256:d21adb08277f5297fe4e2dc162c5cb1d4b5360fcf7375f30679f72ddd93c0daa

Observation 179abc6c-775e-479d-be29-aaa145361f06 · outbound

This paper cites Diffusion posterior sampling for general noisy inverse problems.

Controllable 3D Molecular Generation for Structure-Based Drug Design Through Bayesian Flow Networks and Gradient Integration Diffusion posterior sampling for general noisy inverse problems

Reference 7

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verified fuzzy
raw_fallback, observed 2026-08-05T14:25:35.877398Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-07T06:34:17.273281+00:00.

source=pdf_text observed=2026-08-05T14:25:26.929990Z digest=sha256:be2e8af06d32a0665275cd24f2217311225aac5dcb7bd06a10d33dfd06b27600

Observation af2d385f-5358-4730-b16c-36437d9eadde · outbound

This paper cites Uniprot: a worldwide hub of protein knowledge.

Controllable 3D Molecular Generation for Structure-Based Drug Design Through Bayesian Flow Networks and Gradient Integration Uniprot: a worldwide hub of protein knowledge

Reference 8

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verified fuzzy
raw_fallback, observed 2026-08-05T14:25:35.865764Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-07T06:34:17.273281+00:00.

source=pdf_text observed=2026-08-05T14:25:27.024445Z digest=sha256:5ebe9c34c7c223ae3d1a1423bcd40331c0af76905ea3af7446e1faf8448b0c3b

Observation c0fac689-af22-4d48-a0e8-9f515df84aca · outbound

This paper cites Multi-parameter optimization: identifying high quality compounds with a balance of properties.

Controllable 3D Molecular Generation for Structure-Based Drug Design Through Bayesian Flow Networks and Gradient Integration Multi-parameter optimization: identifying high quality compounds with a balance of properties

Reference 9

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verified fuzzy
raw_fallback, observed 2026-08-05T14:25:35.855286Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-07T06:34:17.273281+00:00.

source=pdf_text observed=2026-08-05T14:25:27.089396Z digest=sha256:03c028f6a31a34287044911fe41c6fc80061480857c0d8fce10a72444b4663fb

Observation 0e59f98b-a02c-401a-a85e-691f2e72b2bf · outbound

This paper cites Comprehensive analysis of kinase inhibitor selectivity.

Controllable 3D Molecular Generation for Structure-Based Drug Design Through Bayesian Flow Networks and Gradient Integration Comprehensive analysis of kinase inhibitor selectivity

Reference 10

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no resolver link, observed 2026-08-05T14:25:27.169773Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

source=pdf_text observed=2026-08-05T14:25:27.169773Z digest=sha256:c51265265521baf4816df12631ecd9259a83c85f9e939fc2aa78b1ff8b4b9f45

Observation c7ffd768-1954-40ef-875c-57ba0bdf8751 · outbound

This paper cites Diffusion models beat gans on image synthesis.

Controllable 3D Molecular Generation for Structure-Based Drug Design Through Bayesian Flow Networks and Gradient Integration Diffusion models beat gans on image synthesis

Reference 11

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no resolver link, observed 2026-08-05T14:25:27.249667Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

source=pdf_text observed=2026-08-05T14:25:27.249667Z digest=sha256:1386ab61287711bc4f8032879e10f2759b86eda37bf3a4a0882de1fd011e91d8

Observation 3ab3b6be-f575-469d-9570-4c93c09096df · outbound

This paper cites Autodock vina 1.2.

Controllable 3D Molecular Generation for Structure-Based Drug Design Through Bayesian Flow Networks and Gradient Integration Autodock vina 1.2

Reference 12

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verified fuzzy
raw_fallback, observed 2026-08-05T14:25:35.830458Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-07T06:34:17.273281+00:00.

source=pdf_text observed=2026-08-05T14:25:27.314201Z digest=sha256:66f1f2e3742900d92319ce967740f16720da9a38e6b076e86c2d67155e48ca68

Observation 3de22a8b-2936-4993-9244-d8ede7f5e13b · outbound

This paper cites Tweedie’s formula and selection bias.

Controllable 3D Molecular Generation for Structure-Based Drug Design Through Bayesian Flow Networks and Gradient Integration Tweedie’s formula and selection bias

Reference 13

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no resolver link, observed 2026-08-05T14:25:27.398826Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

source=pdf_text observed=2026-08-05T14:25:27.398826Z digest=sha256:25caf3dc87b6903796ac51234aa409e093acaccc29b1955cae202af3a2e9f885

Observation c622c464-ec52-495b-8f13-9ebf3428af75 · outbound

This paper cites Estimation of synthetic accessibility score of drug-like molecules based on molecular complexity and fragment contributions.

Controllable 3D Molecular Generation for Structure-Based Drug Design Through Bayesian Flow Networks and Gradient Integration Estimation of synthetic accessibility score of drug-like molecules based on molecular complexity and fragment contributions

Reference 14

Resolution
verified fuzzy
raw_fallback, observed 2026-08-05T14:25:35.812408Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-07T06:34:17.273281+00:00.

source=pdf_text observed=2026-08-05T14:25:27.486828Z digest=sha256:e5eabd5cad0fa6663f33afdfcef3f4a79aa21c531a4a60645fbd526a2d00758f

Observation bff8ed79-5779-4a2b-ae68-5aabff2e0276 · outbound

This paper cites Three-dimensional convolutional neural networks and a cross- docked data set for structure-based drug design.

Controllable 3D Molecular Generation for Structure-Based Drug Design Through Bayesian Flow Networks and Gradient Integration Three-dimensional convolutional neural networks and a cross- docked data set for structure-based drug design

Reference 15

Resolution
verified fuzzy
raw_fallback, observed 2026-08-05T14:25:35.801989Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-07T06:34:17.273281+00:00.

source=pdf_text observed=2026-08-05T14:25:27.553098Z digest=sha256:b28bba50e5185fc59531585141e022ad6a9a444db4c6a4b5711748baa9d6afda

Observation 4c77817e-4aab-46b8-a2e1-7ca8182d21d2 · outbound

This paper cites Reinforced genetic algorithm for structure-based drug design.

Controllable 3D Molecular Generation for Structure-Based Drug Design Through Bayesian Flow Networks and Gradient Integration Reinforced genetic algorithm for structure-based drug design

Reference 16

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raw_fallback, observed 2026-08-05T14:25:35.791132Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-07T06:34:17.273281+00:00.

source=pdf_text observed=2026-08-05T14:25:27.630009Z digest=sha256:16e9157e3cf0cba47751a0cc52b6f5851dd053284eb541ad68c3ed66bd1d595c

Observation 46b43fad-9298-4ff8-82d9-b140a20dca0f · outbound

This paper cites Rethinking Specificity in SBDD: Leveraging Delta Score and Energy-Guided Diffusion.

Controllable 3D Molecular Generation for Structure-Based Drug Design Through Bayesian Flow Networks and Gradient Integration Rethinking Specificity in SBDD: Leveraging Delta Score and Energy-Guided Diffusion

Reference 17

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no resolver link, observed 2026-08-05T14:25:27.708522Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

source=pdf_text observed=2026-08-05T14:25:27.708522Z digest=sha256:02c32386717b1ba64e1fba0bf153a24b23f03524df9479180305fae1372b839a

Observation 5ca183c5-1d0b-49a6-9a86-257db7286feb · outbound

This paper cites Bayesian Flow Networks.

Controllable 3D Molecular Generation for Structure-Based Drug Design Through Bayesian Flow Networks and Gradient Integration Bayesian Flow Networks

Reference 18

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no resolver link, observed 2026-08-05T14:25:27.775723Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

source=pdf_text observed=2026-08-05T14:25:27.775723Z digest=sha256:1b572cafe935d4a411cb843c06d2247cdfb7eb826661a71d9a09b02deb1beefe

Observation 7e09d8f5-750d-4f95-8920-39a1015a8a24 · outbound

This paper cites Aligning target-aware molecule diffusion models with exact energy optimization.

Controllable 3D Molecular Generation for Structure-Based Drug Design Through Bayesian Flow Networks and Gradient Integration Aligning target-aware molecule diffusion models with exact energy optimization

Reference 19

Resolution
verified fuzzy
raw_fallback, observed 2026-08-05T14:25:35.781390Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-07T06:34:17.273281+00:00.

source=pdf_text observed=2026-08-05T14:25:27.893286Z digest=sha256:721922acd51a3cf8c8756d56b3f4dc11224214ba1b87e9e2256529c3344c48c6

Observation a3d6ecd8-53b9-496b-b6e8-8a0fdb310be9 · outbound

This paper cites 3D Equivariant Diffusion for Target-Aware Molecule Generation and Affinity Prediction.

Controllable 3D Molecular Generation for Structure-Based Drug Design Through Bayesian Flow Networks and Gradient Integration 3D Equivariant Diffusion for Target-Aware Molecule Generation and Affinity Prediction

Reference 20

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no resolver link, observed 2026-08-05T14:25:27.970113Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

source=pdf_text observed=2026-08-05T14:25:27.970113Z digest=sha256:835755984be807023f6b56519d038756290ca862161c3daefec0587b3d4ef946

Observation 9feb90b4-d6d5-4e3b-bcb0-1fcb0e07f3b5 · outbound

This paper cites DecompDiff: Diffusion Models with Decomposed Priors for Structure-Based Drug Design.

Controllable 3D Molecular Generation for Structure-Based Drug Design Through Bayesian Flow Networks and Gradient Integration DecompDiff: Diffusion Models with Decomposed Priors for Structure-Based Drug Design

Reference 21

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no resolver link, observed 2026-08-05T14:25:28.012501Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

source=pdf_text observed=2026-08-05T14:25:28.012501Z digest=sha256:05a46c33dda75f42ea5adb764a04fa6d8b8f3b12e59773d6a75650d365087703

Observation a5feea8d-7175-412c-8958-6aea03dbb2fa · outbound

This paper cites Gradient Guidance for Diffusion Models: An Optimization Perspective.

Controllable 3D Molecular Generation for Structure-Based Drug Design Through Bayesian Flow Networks and Gradient Integration Gradient Guidance for Diffusion Models: An Optimization Perspective

Reference 22

Resolution
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no resolver link, observed 2026-08-05T14:25:28.120881Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

source=pdf_text observed=2026-08-05T14:25:28.120881Z digest=sha256:f21218401879ab241d39ed87321ae2f7d80a4cce58cc56d3089c116fd8ab1bcc

Observation 2060369a-838e-4dec-addc-4ecf849b793b · outbound

This paper cites Training- free multi-objective diffusion model for 3d molecule generation.

Controllable 3D Molecular Generation for Structure-Based Drug Design Through Bayesian Flow Networks and Gradient Integration Training- free multi-objective diffusion model for 3d molecule generation

Reference 23

Resolution
verified fuzzy
raw_fallback, observed 2026-08-05T14:25:35.771796Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-07T06:34:17.273281+00:00.

source=pdf_text observed=2026-08-05T14:25:28.182243Z digest=sha256:d65042c43bded30b859101b11c966d8a5629930254c3498738fd3be4163496ba

Observation a9931f27-b7e7-4b53-a45f-e4ee13bdd8e7 · outbound

This paper cites Posecheck: Generative models for 3d structure-based drug design produce unrealistic poses.

Controllable 3D Molecular Generation for Structure-Based Drug Design Through Bayesian Flow Networks and Gradient Integration Posecheck: Generative models for 3d structure-based drug design produce unrealistic poses

Reference 24

Resolution
verified fuzzy
raw_fallback, observed 2026-08-05T14:25:35.760442Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-07T06:34:17.273281+00:00.

source=pdf_text observed=2026-08-05T14:25:28.248770Z digest=sha256:1de3d797f1a3b880eee304a11166e05fcdf91e464ccf19ab1d834865d0cda9d8

Observation 5057ed33-0ed7-42bc-8f74-c7608534345a · outbound

This paper cites Protein-ligand interaction prior for binding- aware 3d molecule diffusion models.

Controllable 3D Molecular Generation for Structure-Based Drug Design Through Bayesian Flow Networks and Gradient Integration Protein-ligand interaction prior for binding- aware 3d molecule diffusion models

Reference 25

Resolution
verified fuzzy
raw_fallback, observed 2026-08-05T14:25:35.749542Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-07T06:34:17.273281+00:00.

source=pdf_text observed=2026-08-05T14:25:28.344035Z digest=sha256:c9eff278d918e7315e2ec002e8695bd943b4b1af16f5d27a955d3ab7d7ad377e

Observation f95ea69a-eb56-4cd1-9aad-f8871d8cf413 · outbound

This paper cites Rational approaches to improving selectivity in drug design.

Controllable 3D Molecular Generation for Structure-Based Drug Design Through Bayesian Flow Networks and Gradient Integration Rational approaches to improving selectivity in drug design

Reference 26

Resolution
verified fuzzy
raw_fallback, observed 2026-08-05T14:25:35.739050Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-07T06:34:17.273281+00:00.

source=pdf_text observed=2026-08-05T14:25:28.479751Z digest=sha256:d939dbe3124cec135189a33249f3adb3a1153f911f766d13e7eca5f96624f467

Observation dfb58398-b767-4cc3-b3ca-7dd20043e546 · outbound

This paper cites A quantitative analysis of kinase inhibitor selectivity.

Controllable 3D Molecular Generation for Structure-Based Drug Design Through Bayesian Flow Networks and Gradient Integration A quantitative analysis of kinase inhibitor selectivity

Reference 27

Resolution
verified fuzzy
raw_fallback, observed 2026-08-05T14:25:35.726398Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-07T06:34:17.273281+00:00.

source=pdf_text observed=2026-08-05T14:25:28.561654Z digest=sha256:5a320706b6c109637caf9c8d90ca372485a6fa550dd2e80c77c7746cdbe88707

Observation 417424e6-728b-4418-a579-dab5d851a69b · outbound

This paper cites Noise2score: tweedie’s approach to self-supervised image denoising without clean images.

Controllable 3D Molecular Generation for Structure-Based Drug Design Through Bayesian Flow Networks and Gradient Integration Noise2score: tweedie’s approach to self-supervised image denoising without clean images

Reference 28

Resolution
verified fuzzy
raw_fallback, observed 2026-08-05T14:25:35.714270Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-07T06:34:17.273281+00:00.

source=pdf_text observed=2026-08-05T14:25:28.686863Z digest=sha256:383e2f2fc48b701fc1e3fae1ca0b400dc668d84a26281195e4eb22328d2c941e

Observation aedf26a6-bb0f-469d-9893-d5dd626fa00b · outbound

This paper cites Recent developments in structure-based drug design.

Controllable 3D Molecular Generation for Structure-Based Drug Design Through Bayesian Flow Networks and Gradient Integration Recent developments in structure-based drug design

Reference 29

Resolution
verified fuzzy
raw_fallback, observed 2026-08-05T14:25:35.703934Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-07T06:34:17.273281+00:00.

source=pdf_text observed=2026-08-05T14:25:28.816716Z digest=sha256:f0b563c09bdf12c881f52d90674a344dd5f2211ca963a1eda46c6e720602f28d

Observation 80d40693-b026-462e-84f1-9895cea71a9e · outbound

This paper cites Lessons learned in empirical scoring with smina from the csar 2011 benchmarking exercise.

Controllable 3D Molecular Generation for Structure-Based Drug Design Through Bayesian Flow Networks and Gradient Integration Lessons learned in empirical scoring with smina from the csar 2011 benchmarking exercise

Reference 30

Resolution
verified fuzzy
raw_fallback, observed 2026-08-05T14:25:35.693739Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-07T06:34:17.273281+00:00.

source=pdf_text observed=2026-08-05T14:25:28.931506Z digest=sha256:9c89567df5dc682624df94062755f1bcac19df9de460deb15c8a2f95d753638f

Observation 78adbec1-0a09-401d-832d-bd35e2329254 · outbound

This paper cites A 3d generative model for structure-based drug design.

Controllable 3D Molecular Generation for Structure-Based Drug Design Through Bayesian Flow Networks and Gradient Integration A 3d generative model for structure-based drug design

Reference 31

Resolution
verified fuzzy
raw_fallback, observed 2026-08-05T14:25:35.683320Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-07T06:34:17.273281+00:00.

source=pdf_text observed=2026-08-05T14:25:29.043798Z digest=sha256:cf158dbf9ff4850890b300b0de464eb6269ed6a3da9973c5390a75fbc3575ab1

Observation 76804ed2-7673-4633-aa5f-1b54f711b2a4 · outbound

This paper cites Gnina 1.0: molecular docking with deep learning.

Controllable 3D Molecular Generation for Structure-Based Drug Design Through Bayesian Flow Networks and Gradient Integration Gnina 1.0: molecular docking with deep learning

Reference 32

Resolution
verified fuzzy
raw_fallback, observed 2026-08-05T14:25:35.673382Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-07T06:34:17.273281+00:00.

source=pdf_text observed=2026-08-05T14:25:29.127500Z digest=sha256:823ef7b825d3eb7bd7198899cb3d9bdbc7ae1cfd3d34a8819cb2e901763d0163

Observation b03e1972-15a5-48d2-992e-ec8d8ccbcd94 · outbound

This paper cites 3d molecule generation by denoising voxel grids.

Controllable 3D Molecular Generation for Structure-Based Drug Design Through Bayesian Flow Networks and Gradient Integration 3d molecule generation by denoising voxel grids

Reference 33

Resolution
verified fuzzy
raw_fallback, observed 2026-08-05T14:25:35.661728Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-07T06:34:17.273281+00:00.

source=pdf_text observed=2026-08-05T14:25:29.215327Z digest=sha256:030f8c7d5686d6aa31a2b1d399baf1795582c6c81cf83bb082d89a6417f99ac0

Observation 303244e1-558e-445b-8f24-694736762545 · outbound

This paper cites Pocket2mol: Efficient molecular sampling based on 3d protein pockets.

Controllable 3D Molecular Generation for Structure-Based Drug Design Through Bayesian Flow Networks and Gradient Integration Pocket2mol: Efficient molecular sampling based on 3d protein pockets

Reference 34

Resolution
verified fuzzy
raw_fallback, observed 2026-08-05T14:25:35.608080Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-07T06:34:17.273281+00:00.

source=pdf_text observed=2026-08-05T14:25:29.285907Z digest=sha256:53328455d4bc34975cab8f177840a75f5e580bc46ab566f915444126e86e1b88

Observation a3b8f302-f1bd-46a0-82f8-b76b8c1bb878 · outbound

This paper cites MolDiff: Addressing the Atom-Bond Inconsistency Problem in 3D Molecule Diffusion Generation.

Controllable 3D Molecular Generation for Structure-Based Drug Design Through Bayesian Flow Networks and Gradient Integration MolDiff: Addressing the Atom-Bond Inconsistency Problem in 3D Molecule Diffusion Generation

Reference 35

Resolution
unresolved
no resolver link, observed 2026-08-05T14:25:29.394587Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

source=pdf_text observed=2026-08-05T14:25:29.394587Z digest=sha256:db6066c1fbf4bd9f4ad540fda21184fe634c977248cb9a1889ecd6397396ad96

Observation 9bb84b3e-45aa-43dc-be7c-b462c49d6638 · outbound

This paper cites Geometric deep learning for structure-based ligand design.

Controllable 3D Molecular Generation for Structure-Based Drug Design Through Bayesian Flow Networks and Gradient Integration Geometric deep learning for structure-based ligand design

Reference 36

Resolution
verified fuzzy
raw_fallback, observed 2026-08-05T14:25:35.419346Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-07T06:34:17.273281+00:00.

source=pdf_text observed=2026-08-05T14:25:29.483161Z digest=sha256:65a868b8b6930b700ac80419b68bfe0782aa015750cf55ad9d6ba7fc17f6b087

Observation 7229f47d-e83e-4b4f-9ddb-0d06fc7db79a · outbound

This paper cites Molcraft: Structure-based drug design in continuous parameter space.

Controllable 3D Molecular Generation for Structure-Based Drug Design Through Bayesian Flow Networks and Gradient Integration Molcraft: Structure-based drug design in continuous parameter space

Reference 37

Resolution
verified fuzzy
raw_fallback, observed 2026-08-05T14:25:35.243750Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-07T06:34:17.273281+00:00.

source=pdf_text observed=2026-08-05T14:25:29.597946Z digest=sha256:df77dc66e82e80566b88604f3428bb0b35136ee4da4ee332e4c5f32ad65fe7f7

Observation 40e7c504-d5ca-44ff-bb22-caf082a2701b · outbound

This paper cites Generating 3d molecules con- ditional on receptor binding sites with deep generative models.

Controllable 3D Molecular Generation for Structure-Based Drug Design Through Bayesian Flow Networks and Gradient Integration Generating 3d molecules con- ditional on receptor binding sites with deep generative models

Reference 38

Resolution
verified fuzzy
raw_fallback, observed 2026-08-05T14:25:35.043630Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-07T06:34:17.273281+00:00.

source=pdf_text observed=2026-08-05T14:25:29.675003Z digest=sha256:bba436a3ccfcd3344a2372caa95cc71494834bbee861b1746f6bcca1254db3e8

Observation 539b5194-2d31-4058-896d-677fa4aba21d · outbound

This paper cites Structure-based drug design with equivariant diffusion models, 2023.

Controllable 3D Molecular Generation for Structure-Based Drug Design Through Bayesian Flow Networks and Gradient Integration Structure-based drug design with equivariant diffusion models, 2023

Reference 39

Resolution
verified fuzzy
raw_fallback, observed 2026-08-05T14:25:34.748192Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-07T06:34:17.273281+00:00.

source=pdf_text observed=2026-08-05T14:25:29.751063Z digest=sha256:cc42e9b705c60595dea04a013ffa22de12b975dfa802614e194d35c4e016f294

Observation 916f60f3-f3d0-4a6a-9a44-818136a284f7 · outbound

This paper cites Structure-based drug design with equivariant diffusion models.

Controllable 3D Molecular Generation for Structure-Based Drug Design Through Bayesian Flow Networks and Gradient Integration Structure-based drug design with equivariant diffusion models

Reference 40

Resolution
verified fuzzy
raw_fallback, observed 2026-08-05T14:25:34.474999Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-07T06:34:17.273281+00:00.

source=pdf_text observed=2026-08-05T14:25:29.817784Z digest=sha256:738673c22f3f1956a2aabd3663d5ad968a840627fc77b8ed09217a4ef368542a

Observation 80e0e365-2cc7-4269-af1e-7514071941a0 · outbound

This paper cites On the Pitfalls of Heteroscedastic Uncertainty Estimation with Probabilistic Neural Networks.

Controllable 3D Molecular Generation for Structure-Based Drug Design Through Bayesian Flow Networks and Gradient Integration On the Pitfalls of Heteroscedastic Uncertainty Estimation with Probabilistic Neural Networks

Reference 41

Resolution
unresolved
no resolver link, observed 2026-08-05T14:25:29.931810Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

source=pdf_text observed=2026-08-05T14:25:29.931810Z digest=sha256:e087dab687d2d52ae2e96c29b64610264337c575b7924ac2a336a4c8b8adb6db

Observation 1b4e9a2e-f68c-40de-93cf-2055dd84b713 · outbound

This paper cites Tacogfn: Target-conditioned gflownet for structure-based drug design.

Controllable 3D Molecular Generation for Structure-Based Drug Design Through Bayesian Flow Networks and Gradient Integration Tacogfn: Target-conditioned gflownet for structure-based drug design

Reference 42

Resolution
verified fuzzy
raw_fallback, observed 2026-08-05T14:25:34.226009Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-07T06:34:17.273281+00:00.

source=pdf_text observed=2026-08-05T14:25:30.047436Z digest=sha256:d7e7b86261f85de5fc7fcd0e3b0d2e11282ac46510fdd1add8f6ad6cb121b9d6

Observation 0a13d31b-cfbb-42b0-a166-11c282b495d3 · outbound

This paper cites TacoGFN: Target-conditioned GFlowNet for Structure-based Drug Design.

Controllable 3D Molecular Generation for Structure-Based Drug Design Through Bayesian Flow Networks and Gradient Integration TacoGFN: Target-conditioned GFlowNet for Structure-based Drug Design

Reference 43

Resolution
verified exact
local_arxiv, observed 2026-08-05T14:25:31.729773Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-07T06:34:17.273281+00:00.

source=pdf_text observed=2026-08-05T14:25:30.149222Z digest=sha256:13031df62ea7590c2e224e31cee704085a55785c5399b5f8ba72b84cebecbd48

Observation 95c506fb-3ed8-416f-80e4-08e8f1cb836f · outbound

This paper cites From target to drug: generative modeling for the multimodal structure-based ligand design.Molecular pharmaceutics, 16(10):4282–4291, 2019.

Controllable 3D Molecular Generation for Structure-Based Drug Design Through Bayesian Flow Networks and Gradient Integration From target to drug: generative modeling for the multimodal structure-based ligand design.Molecular pharmaceutics, 16(10):4282–4291, 2019

Reference 44

Resolution
verified fuzzy
raw_fallback, observed 2026-08-05T14:25:34.031008Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-07T06:34:17.273281+00:00.

source=pdf_text observed=2026-08-05T14:25:30.244844Z digest=sha256:f07158a606bee182e6c608113a18bc2323e39bbd806fbd5631a5c06cdef69ad1

Observation 496a8d85-c63e-467f-a53e-0a3d90e1669c · outbound

This paper cites Score-Based Generative Modeling through Stochastic Differential Equations.

Controllable 3D Molecular Generation for Structure-Based Drug Design Through Bayesian Flow Networks and Gradient Integration Score-Based Generative Modeling through Stochastic Differential Equations

Reference 45

Resolution
unresolved
no resolver link, observed 2026-08-05T14:25:30.313220Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

source=pdf_text observed=2026-08-05T14:25:30.313220Z digest=sha256:30674baf1bb3cb7b90ca33e1294ff64f84b37d5babd54b0401b839664818cf81

Observation 8e59c6ef-d98c-4cb6-a9ba-0f55e3d0338d · outbound

This paper cites Unified generative modeling of 3d molecules with bayesian flow networks.

Controllable 3D Molecular Generation for Structure-Based Drug Design Through Bayesian Flow Networks and Gradient Integration Unified generative modeling of 3d molecules with bayesian flow networks

Reference 46

Resolution
verified fuzzy
raw_fallback, observed 2026-08-05T14:25:33.873781Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-07T06:34:17.273281+00:00.

source=pdf_text observed=2026-08-05T14:25:30.394275Z digest=sha256:da59bb889537a7ea2c4ceb931b18d9e5ca1da35d83bf77dd93864d5a437a36c0

Observation d1a15dbc-e954-4b4f-b6c3-59c202c6162e · outbound

This paper cites Selective optimization of side activities: another way for drug discovery.

Controllable 3D Molecular Generation for Structure-Based Drug Design Through Bayesian Flow Networks and Gradient Integration Selective optimization of side activities: another way for drug discovery

Reference 47

Resolution
verified fuzzy
raw_fallback, observed 2026-08-05T14:25:33.689922Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-07T06:34:17.273281+00:00.

source=pdf_text observed=2026-08-05T14:25:30.529703Z digest=sha256:dbbe0e8387c4dfb69c1f2d87ff3aa5e4fa8ff85dc43c6303f59d6fd01d0d1627

Observation 61daa666-f283-4118-8a0d-e766d873e290 · outbound

This paper cites Learning subpocket prototypes for generalizable structure-based drug design.

Controllable 3D Molecular Generation for Structure-Based Drug Design Through Bayesian Flow Networks and Gradient Integration Learning subpocket prototypes for generalizable structure-based drug design

Reference 48

Resolution
verified fuzzy
raw_fallback, observed 2026-08-05T14:25:33.508353Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-07T06:34:17.273281+00:00.

source=pdf_text observed=2026-08-05T14:25:30.627743Z digest=sha256:48bc8cc0bec354f06b69c1b9ca4de3f78fee93de3fe2b15a66d26aa9cfa8d296

Observation e3e189fc-c547-47ab-b1ad-4794fd956ab3 · outbound

This paper cites Molecule generation for target pro- tein binding with structural motifs.

Controllable 3D Molecular Generation for Structure-Based Drug Design Through Bayesian Flow Networks and Gradient Integration Molecule generation for target pro- tein binding with structural motifs

Reference 49

Resolution
verified fuzzy
raw_fallback, observed 2026-08-05T14:25:33.348023Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-07T06:34:17.273281+00:00.

source=pdf_text observed=2026-08-05T14:25:30.699013Z digest=sha256:569463c1bb9bcecd66cd9b6914eba6c4f58dd4c4fd6dcd09ef06820ae661d2cd

Observation 6fe4ccaf-4330-442b-ad39-5d0e1bbf8f94 · outbound

This paper cites Geometric Deep Learning for Structure-Based Drug Design: A Survey.

Controllable 3D Molecular Generation for Structure-Based Drug Design Through Bayesian Flow Networks and Gradient Integration Geometric Deep Learning for Structure-Based Drug Design: A Survey

Reference 50

Resolution
verified exact
local_arxiv, observed 2026-08-05T14:25:31.511955Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-07T06:34:17.273281+00:00.

source=pdf_text observed=2026-08-05T14:25:30.791122Z digest=sha256:8a489f5b289013af9c1a1f76d049e481c436f1b9b417ff7d5cf663c2f3a3be05

Observation 473074fa-b053-4931-abec-30281d4c7a75 · outbound

This paper cites known unknown.

Controllable 3D Molecular Generation for Structure-Based Drug Design Through Bayesian Flow Networks and Gradient Integration known unknown

Reference 51

Resolution
verified fuzzy
raw_fallback, observed 2026-08-05T14:25:33.150214Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-07T06:34:17.273281+00:00.

source=pdf_text observed=2026-08-05T14:25:30.895618Z digest=sha256:089cf763ac83b5c0eeb27b5a8ee654c2b9c02fda711117c053288cf2cafc074f

Observation 637c19c6-7dac-4ef8-8266-19a9b8d8e8d3 · outbound

This paper cites an unresolved cited work.

Controllable 3D Molecular Generation for Structure-Based Drug Design Through Bayesian Flow Networks and Gradient Integration Unresolved cited work

Reference 52

Resolution
unresolved
raw_fallback, observed 2026-08-05T14:25:32.974261Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-07T06:34:17.273281+00:00.

source=pdf_text observed=2026-08-05T14:25:30.963695Z digest=sha256:7a72ecd2b9665df6ec566da64f27481a8fd0a088f8dbc197c7af777a0be79921

Observation b0d98ba8-6690-423c-a925-0a37e10522d4 · outbound

This paper cites an unresolved cited work.

Controllable 3D Molecular Generation for Structure-Based Drug Design Through Bayesian Flow Networks and Gradient Integration Unresolved cited work

Reference 53

Resolution
unresolved
raw_fallback, observed 2026-08-05T14:25:32.799964Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-07T06:34:17.273281+00:00.

source=pdf_text observed=2026-08-05T14:25:31.071125Z digest=sha256:54e53f4990e382d1977890a46da08daff7f975c493d40d4213854d8734873512

Observation fdf75671-3e8e-4701-8255-57d0eea07636 · outbound

This paper cites Here h(θi−1, yi, αi) computes the posterior parameter after observing yi with precision αi, given the prior θi−1.

Controllable 3D Molecular Generation for Structure-Based Drug Design Through Bayesian Flow Networks and Gradient Integration Here h(θi−1, yi, αi) computes the posterior parameter after observing yi with precision αi, given the prior θi−1

Reference 54

Resolution
verified fuzzy
raw_fallback, observed 2026-08-05T14:25:32.571158Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-07T06:34:17.273281+00:00.

source=pdf_text observed=2026-08-05T14:25:31.149120Z digest=sha256:cedb01f9ef8e0e3e68072f763c9118a701bb187ecc733309a2e2774b16a27f53

Observation 5c10dfd4-1644-4947-af80-d0435e69b56d · outbound

This paper cites In contrast, diffusion models explicitly add random noise to samples at each step to maintain stochasticity.

Controllable 3D Molecular Generation for Structure-Based Drug Design Through Bayesian Flow Networks and Gradient Integration In contrast, diffusion models explicitly add random noise to samples at each step to maintain stochasticity

Reference 55

Resolution
verified fuzzy
raw_fallback, observed 2026-08-05T14:25:32.356065Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-07T06:34:17.273281+00:00.

source=pdf_text observed=2026-08-05T14:25:31.223917Z digest=sha256:6576ffecd078f5491ab0d7aee3c4c44b64f0525816369c783b2bff51732b19ef

Observation 66be65b3-41ec-4830-943a-e9d2bffc65f8 · outbound

This paper cites an unresolved cited work.

Controllable 3D Molecular Generation for Structure-Based Drug Design Through Bayesian Flow Networks and Gradient Integration Unresolved cited work

Reference 56

Resolution
unresolved
raw_fallback, observed 2026-08-05T14:25:32.178924Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-07T06:34:17.273281+00:00.

source=pdf_text observed=2026-08-05T14:25:31.300974Z digest=sha256:d790f40a24c5d97d4884e6d115db2ddf9ef8f03d3abf31711ae6b501c0afca96

Observation 36b354fe-8d4c-4f37-8624-acd9b4bddcb7 · outbound

This paper cites Only Generation Type.

Controllable 3D Molecular Generation for Structure-Based Drug Design Through Bayesian Flow Networks and Gradient Integration Only Generation Type

Reference 57

Resolution
malformed identifier
raw_fallback, observed 2026-08-05T14:25:31.976708Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-07T06:34:17.273281+00:00.

source=pdf_text observed=2026-08-05T14:25:31.339421Z digest=sha256:1d0694a08bb6165b09f80a4d9c20a9c7078cb64b8604123d603e44626bd0a568

Pith citing papers

Observation d5d78610-e890-4564-870e-e67b5c4030ad · inbound

Uncertainty-Calibrated Diffusion for Reliable 3D Molecular Graph Generation cites this paper.

Uncertainty-Calibrated Diffusion for Reliable 3D Molecular Graph Generation Controllable 3D Molecular Generation for Structure-Based Drug Design Through Bayesian Flow Networks and Gradient Integration

Reference 7

Resolution
verified exact
arxiv_id, observed 2026-07-01T21:56:16.229264Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-07T06:34:17.273281+00:00.

source=pdf_text observed=2026-06-28T15:56:09.312666Z digest=sha256:fa48b1a2ec3616ecd90efb41600085e501e3ad100b6d1a386604c3651683ce55