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Paper Citation Record · LEDGER

Computational modelling of biological systems now and then: revisiting tools and visions from the beginning of the century

As of 16 August 2026, this Paper Citation Record lists 100 of 182 outbound references and 0 inbound Pith citation observations for arXiv:2501.13142.

A citation records a reference. It does not transfer a finding from one paper to another.

pith.paper-citation-record.v1
2501.13142 v1

Coverage vector

measured 100 of 182 reference resolution

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Pith citing papers itemized under the disclosed page cap.

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Reference resolution

100 of 182 outbound references displayed

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Outbound references

Observation 1c0e3938-5507-4953-9b80-805221b47a45 · outbound

This paper cites 2000 Computational modelling of biological systems: tools and visions.

Computational modelling of biological systems now and then: revisiting tools and visions from the beginning of the century 2000 Computational modelling of biological systems: tools and visions

Reference 1

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Observation 74504598-fd0f-4a60-87dc-7b0df6e3f9ce · outbound

This paper cites 2020 The ‘Digital Twin’ to enable the vision of precision cardiology.

Computational modelling of biological systems now and then: revisiting tools and visions from the beginning of the century 2020 The ‘Digital Twin’ to enable the vision of precision cardiology

Reference 2

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This paper cites 2003 Integration from proteins to organs: the Physiome Project.Nature Reviews Molecular Cell Biology 4, 237–243.

Computational modelling of biological systems now and then: revisiting tools and visions from the beginning of the century 2003 Integration from proteins to organs: the Physiome Project.Nature Reviews Molecular Cell Biology 4, 237–243

Reference 3

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This paper cites 2010 A vision and strategy for the virtual physiological human in 2010 and beyond.

Computational modelling of biological systems now and then: revisiting tools and visions from the beginning of the century 2010 A vision and strategy for the virtual physiological human in 2010 and beyond

Reference 4

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Observation a14467fa-4c92-41f9-86cf-77302e437649 · outbound

This paper cites A brief introduction to observational entropy.

Computational modelling of biological systems now and then: revisiting tools and visions from the beginning of the century A brief introduction to observational entropy

Reference 5

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This paper cites 2013 A vision and strategy for the virtual physiological human: 2012 update.

Computational modelling of biological systems now and then: revisiting tools and visions from the beginning of the century 2013 A vision and strategy for the virtual physiological human: 2012 update

Reference 6

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This paper cites 2021 Quantitative cross-species translators of cardiac myocyte electrophysiology: Model training, experimental validation, and applications.

Computational modelling of biological systems now and then: revisiting tools and visions from the beginning of the century 2021 Quantitative cross-species translators of cardiac myocyte electrophysiology: Model training, experimental validation, and applications

Reference 7

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Observation fff4d4ed-57ff-494a-9e5f-b7e700c9f260 · outbound

This paper cites Pierre SR, Peirlinck M, Kuhl E.

Computational modelling of biological systems now and then: revisiting tools and visions from the beginning of the century Pierre SR, Peirlinck M, Kuhl E

Reference 8

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This paper cites 2021 Artificial intelligence-enhanced elec- trocardiography in cardiovascular disease management.

Computational modelling of biological systems now and then: revisiting tools and visions from the beginning of the century 2021 Artificial intelligence-enhanced elec- trocardiography in cardiovascular disease management

Reference 9

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This paper cites 2020 Artificial Intelligence and Machine Learn- ing in Arrhythmias and Cardiac Electrophysiology.

Computational modelling of biological systems now and then: revisiting tools and visions from the beginning of the century 2020 Artificial Intelligence and Machine Learn- ing in Arrhythmias and Cardiac Electrophysiology

Reference 10

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This paper cites 2021 Application of artificial intelligence to the electrocardiogram.

Computational modelling of biological systems now and then: revisiting tools and visions from the beginning of the century 2021 Application of artificial intelligence to the electrocardiogram

Reference 11

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Observation 8c4605dc-7e07-4a43-84ec-89d00bae6c30 · outbound

This paper cites 2021 Artificial intelligence in the diagnosis and management of arrhythmias.

Computational modelling of biological systems now and then: revisiting tools and visions from the beginning of the century 2021 Artificial intelligence in the diagnosis and management of arrhythmias

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This paper cites 2023 The application of simulation methods during the COVID-19 pandemic: A scoping review.

Computational modelling of biological systems now and then: revisiting tools and visions from the beginning of the century 2023 The application of simulation methods during the COVID-19 pandemic: A scoping review

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Observation d5362555-cce6-4949-b99a-baa634a5a18e · outbound

This paper cites 2023 Mortality and life expectancy statistics.

Computational modelling of biological systems now and then: revisiting tools and visions from the beginning of the century 2023 Mortality and life expectancy statistics

Reference 14

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This paper cites 2023 25 years of basic and translational science in EP Europace: novel insights into arrhythmia mechanisms and therapeutic strategies.

Computational modelling of biological systems now and then: revisiting tools and visions from the beginning of the century 2023 25 years of basic and translational science in EP Europace: novel insights into arrhythmia mechanisms and therapeutic strategies

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Observation fd1b0192-d31c-486e-a302-cea6940b5016 · outbound

This paper cites 2022 Dyssynchronous Left Ventricular Activation is Insufficient for the Breakdown of Wringing Rotation.

Computational modelling of biological systems now and then: revisiting tools and visions from the beginning of the century 2022 Dyssynchronous Left Ventricular Activation is Insufficient for the Breakdown of Wringing Rotation

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Observation f454a4c3-d519-4666-a4c4-ca03afedd0f8 · outbound

This paper cites 2018 Computational models in cardiology.Nat Rev Cardiol 16, 100–111.

Computational modelling of biological systems now and then: revisiting tools and visions from the beginning of the century 2018 Computational models in cardiology.Nat Rev Cardiol 16, 100–111

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Observation 227819c4-9d98-4fe9-972e-b3f04bbbd1c9 · outbound

This paper cites 2021 Computational models of atrial fibrillation: achievements, challenges, and perspectives for improving clinical care.

Computational modelling of biological systems now and then: revisiting tools and visions from the beginning of the century 2021 Computational models of atrial fibrillation: achievements, challenges, and perspectives for improving clinical care

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This paper cites 2018 Cardiac ischemia-insights from computational models.

Computational modelling of biological systems now and then: revisiting tools and visions from the beginning of the century 2018 Cardiac ischemia-insights from computational models

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This paper cites 2009 Effects of fibroblast-myocyte coupling on cardiac conduction and vulnerability to reentry: A computational study.

Computational modelling of biological systems now and then: revisiting tools and visions from the beginning of the century 2009 Effects of fibroblast-myocyte coupling on cardiac conduction and vulnerability to reentry: A computational study

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Observation f648944f-f55f-4c1b-a3a5-2c6fa350354b · outbound

This paper cites 2021 Novel insights into the electrophysiology of murine cardiac macrophages: relevance of voltage-gated potassium channels.

Computational modelling of biological systems now and then: revisiting tools and visions from the beginning of the century 2021 Novel insights into the electrophysiology of murine cardiac macrophages: relevance of voltage-gated potassium channels

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Observation 669ea6ee-2f0e-46f7-a83b-633ad8f60856 · outbound

This paper cites 2017 Effects of Fibroblasts Coupling on the Electrophysiology of Cardiomyocytes from Different Regions of the Human Atrium: A Simulation Study.

Computational modelling of biological systems now and then: revisiting tools and visions from the beginning of the century 2017 Effects of Fibroblasts Coupling on the Electrophysiology of Cardiomyocytes from Different Regions of the Human Atrium: A Simulation Study

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This paper cites 2020 Digital twin: Definition & value.

Computational modelling of biological systems now and then: revisiting tools and visions from the beginning of the century 2020 Digital twin: Definition & value

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This paper cites 2023 Biventricular shape modes discriminate pulmonary valve replacement in tetralogy of Fallot better than imaging indices.Scientific Reports 13.

Computational modelling of biological systems now and then: revisiting tools and visions from the beginning of the century 2023 Biventricular shape modes discriminate pulmonary valve replacement in tetralogy of Fallot better than imaging indices.Scientific Reports 13

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This paper cites 2021 Left atrial shape is independent predictor of arrhythmia recurrence after catheter ablation for atrial fibrillation: A shape statistics study.

Computational modelling of biological systems now and then: revisiting tools and visions from the beginning of the century 2021 Left atrial shape is independent predictor of arrhythmia recurrence after catheter ablation for atrial fibrillation: A shape statistics study

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Observation 02fab00c-7a04-4d89-8ca6-479aa27a4be4 · outbound

This paper cites 2021 Scaling digital twins from the artisanal to the industrial.

Computational modelling of biological systems now and then: revisiting tools and visions from the beginning of the century 2021 Scaling digital twins from the artisanal to the industrial

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Observation d3d79bbc-1701-4c76-93d0-960569620020 · outbound

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Computational modelling of biological systems now and then: revisiting tools and visions from the beginning of the century 2016 In silico clinical trials: how computer simulation will transform the biomedical industry.International Journal of Clinical Trials3, 37

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Observation 47bda29c-c1f0-43cf-bad3-661e0872bad5 · outbound

This paper cites 2021 Possible Contexts of Use for In Silico Trials Methodologies: A Consensus-Based Review.IEEE Journal of Biomedical and Health Informatics 25, 3977–3982.

Computational modelling of biological systems now and then: revisiting tools and visions from the beginning of the century 2021 Possible Contexts of Use for In Silico Trials Methodologies: A Consensus-Based Review.IEEE Journal of Biomedical and Health Informatics 25, 3977–3982

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This paper cites 2018 Assessing credibility of computational modeling through verification and validation: application to medical devices.

Computational modelling of biological systems now and then: revisiting tools and visions from the beginning of the century 2018 Assessing credibility of computational modeling through verification and validation: application to medical devices

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This paper cites 2024 Toward Good Simulation Practice — Best Practices for the Use of Computational Modelling and Simulation in the Regulatory Process of Biomedical Products.

Computational modelling of biological systems now and then: revisiting tools and visions from the beginning of the century 2024 Toward Good Simulation Practice — Best Practices for the Use of Computational Modelling and Simulation in the Regulatory Process of Biomedical Products

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Computational modelling of biological systems now and then: revisiting tools and visions from the beginning of the century 2022 Successes and Opportunities in Modeling & Simulation for FDA

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Observation 2d81eedc-6b55-4c47-b9c0-619b9b155327 · outbound

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Computational modelling of biological systems now and then: revisiting tools and visions from the beginning of the century 2023 Unlocking the power of computational modelling and simulation across the product lifecycle in life sciences: A UK Landscape Report

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Observation ea8f6298-582e-40af-8b2e-15e01430028b · outbound

This paper cites 2021 In-silico trial of intracranial flow diverters replicates and expands insights from conventional clinical trials.

Computational modelling of biological systems now and then: revisiting tools and visions from the beginning of the century 2021 In-silico trial of intracranial flow diverters replicates and expands insights from conventional clinical trials

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Observation fe403d99-e6ca-4ad4-ae5a-b2b0f9c43720 · outbound

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Computational modelling of biological systems now and then: revisiting tools and visions from the beginning of the century 2019 Statistical Shape Models: Understanding and Mastering Variation in Anatomy

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Observation 1a40ff1d-9504-456a-a3db-8672d7881193 · outbound

This paper cites 2024 A Generative Shape Compositional Framework to Synthesize Populations of Virtual Chimeras.

Computational modelling of biological systems now and then: revisiting tools and visions from the beginning of the century 2024 A Generative Shape Compositional Framework to Synthesize Populations of Virtual Chimeras

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Observation 90affc20-40a3-461a-bc1f-422f7827d88b · outbound

This paper cites 2013 Experimentally calibrated population of models predicts and explains intersubject variability in cardiac cellular electrophysiology.Proc Natl Acad Sci U S A 110, E2098–105.

Computational modelling of biological systems now and then: revisiting tools and visions from the beginning of the century 2013 Experimentally calibrated population of models predicts and explains intersubject variability in cardiac cellular electrophysiology.Proc Natl Acad Sci U S A 110, E2098–105

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Observation e71865a3-db2e-48b9-8eac-13abe177bbde · outbound

This paper cites 2023 MedalCare-XL: 16,900 healthy and pathological synthetic 12 lead ECGs from electrophysiological simulations.

Computational modelling of biological systems now and then: revisiting tools and visions from the beginning of the century 2023 MedalCare-XL: 16,900 healthy and pathological synthetic 12 lead ECGs from electrophysiological simulations

Reference 39

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Observation f34c339a-7a72-4259-938e-87331330536c · outbound

This paper cites 2018 Unlocking data sets by calibrating popu- lations of models to data density: A study in atrial electrophysiology.

Computational modelling of biological systems now and then: revisiting tools and visions from the beginning of the century 2018 Unlocking data sets by calibrating popu- lations of models to data density: A study in atrial electrophysiology

Reference 40

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source=pdf_text observed=2026-08-10T16:42:14.612399Z digest=sha256:e096cf589e1f719db890a245c353b47e1a770430c74f2a54876d88a82ba9188e

Observation 13d5f029-b422-4468-a28e-fe13791bb1c6 · outbound

This paper cites 2021 Applications of artificial intelligence in cardiovascular imaging.

Computational modelling of biological systems now and then: revisiting tools and visions from the beginning of the century 2021 Applications of artificial intelligence in cardiovascular imaging

Reference 41

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source=pdf_text observed=2026-08-10T16:42:14.616068Z digest=sha256:6fd4e0dabc96b5a028e3ad9077d6c158cd9107806ce18d4d98e4247c337176e8

Observation e7682b14-39b7-4525-acc3-07744a1e61cd · outbound

This paper cites 2022 Machine Learning for Clinical Electrophyisology.

Computational modelling of biological systems now and then: revisiting tools and visions from the beginning of the century 2022 Machine Learning for Clinical Electrophyisology

Reference 42

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source=pdf_text observed=2026-08-10T16:42:14.620304Z digest=sha256:09d32ec072754647170ec29e4b134c549244f7b149f8a29009e4f33721d1a241

Observation 9fd14df0-92bc-4f44-aa93-88e846dd7b04 · outbound

This paper cites 2021 Machine Learning in Arrhythmia and Electrophysiology.

Computational modelling of biological systems now and then: revisiting tools and visions from the beginning of the century 2021 Machine Learning in Arrhythmia and Electrophysiology

Reference 43

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source=pdf_text observed=2026-08-10T16:42:14.623722Z digest=sha256:082d659f44253abb074fbb58807b8e3a0f298e2c7339d10cfe7ff07a0b873983

Observation 1f08a952-af4b-41e5-8ce3-50c0204fe226 · outbound

This paper cites 2021 Controversies between regulations of research ethics and protection of personal data: informed consent at a cross-road.

Computational modelling of biological systems now and then: revisiting tools and visions from the beginning of the century 2021 Controversies between regulations of research ethics and protection of personal data: informed consent at a cross-road

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source=pdf_text observed=2026-08-10T16:42:14.627210Z digest=sha256:cc5417687b2200b42a4ae8e2d11d6dec199845144c18e5a406217988085d7156

Observation 3a508e74-af0d-4da1-8efc-0412fcc1b7da · outbound

This paper cites 2023 The challenges of research data management in cardiovascular science: a DGK and DZHK position paper-executive summary.

Computational modelling of biological systems now and then: revisiting tools and visions from the beginning of the century 2023 The challenges of research data management in cardiovascular science: a DGK and DZHK position paper-executive summary

Reference 45

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source=pdf_text observed=2026-08-10T16:42:14.631669Z digest=sha256:d602af7088630d586a477508a6d928f4d79eac19485d0d1b328acf8259c7b463

Observation bb8be200-468e-48d9-9d83-c9ea8426cc8a · outbound

This paper cites 2021 Fairness in Cardiac MR Image Analysis: An Investigation of Bias Due to Data Imbalance in Deep Learning Based Segmentation.

Computational modelling of biological systems now and then: revisiting tools and visions from the beginning of the century 2021 Fairness in Cardiac MR Image Analysis: An Investigation of Bias Due to Data Imbalance in Deep Learning Based Segmentation

Reference 46

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source=pdf_text observed=2026-08-10T16:42:14.635490Z digest=sha256:70c66d4bbd9f5a53f57c7ac12a9640d198d53eeab3fab725109660e6a08f3a82

Observation 5c07eba5-4011-49ba-a2d8-813398295421 · outbound

This paper cites 2020 Quantification and Classification of Potassium and Calcium Disorders with the Electrocardiogram – What Do Clinical Studies, Modeling and Reconstruction Tell Us?.

Computational modelling of biological systems now and then: revisiting tools and visions from the beginning of the century 2020 Quantification and Classification of Potassium and Calcium Disorders with the Electrocardiogram – What Do Clinical Studies, Modeling and Reconstruction Tell Us?

Reference 47

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source=pdf_text observed=2026-08-10T16:42:14.639443Z digest=sha256:672d7bdcf4954a8695f2998bfe90ddf559c4326da6e6f7a2efc593c03c85a5b6

Observation b8df531a-dec5-4699-a70c-c082e944b5f9 · outbound

This paper cites 2024 A causal perspective on dataset bias in machine learning for medical imaging.

Computational modelling of biological systems now and then: revisiting tools and visions from the beginning of the century 2024 A causal perspective on dataset bias in machine learning for medical imaging

Reference 48

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source=pdf_text observed=2026-08-10T16:42:14.643021Z digest=sha256:2df61d3c4b4d146067213199702e3bb62770497bf1875310cb92fbf89df78e98

Observation f2f09166-b256-4f85-a458-cf446b0a4481 · outbound

This paper cites 2020 The future of digital health with federated learning.

Computational modelling of biological systems now and then: revisiting tools and visions from the beginning of the century 2020 The future of digital health with federated learning

Reference 49

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source=pdf_text observed=2026-08-10T16:42:14.646811Z digest=sha256:a76ccf279acefe87762d0e9b11289de1439bd3838c605711c4669df1a810ae3c

Observation d56bb746-496b-423c-bc29-0fd48e339204 · outbound

This paper cites 2016 The FAIR Guiding Principles for scientific data management and stewardship.

Computational modelling of biological systems now and then: revisiting tools and visions from the beginning of the century 2016 The FAIR Guiding Principles for scientific data management and stewardship

Reference 50

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source=pdf_text observed=2026-08-10T16:42:14.650312Z digest=sha256:85864de1d17c033745cb97de5fc7011248a1279c538f770b4283a88e4b3d8d2a

Observation 6a624028-1438-4c96-8c78-f4d4361ab215 · outbound

This paper cites 2022 FAIR Principles for Research Software (FAIR4RS Principles).

Computational modelling of biological systems now and then: revisiting tools and visions from the beginning of the century 2022 FAIR Principles for Research Software (FAIR4RS Principles)

Reference 51

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source=pdf_text observed=2026-08-10T16:42:14.654068Z digest=sha256:19fc25ce3d73ca0e0caf67dad1f2236b3f0da993d99c9465ab3ffe1a5467c202

Observation 0c77da5f-5d46-4580-baf5-cdedf80e14b8 · outbound

This paper cites 2019 Integrating machine learning and multiscale modeling—perspectives, challenges, and opportunities in the biological, biomedical, and behavioral sciences.

Computational modelling of biological systems now and then: revisiting tools and visions from the beginning of the century 2019 Integrating machine learning and multiscale modeling—perspectives, challenges, and opportunities in the biological, biomedical, and behavioral sciences

Reference 52

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source=pdf_text observed=2026-08-10T16:42:14.657602Z digest=sha256:25e25a215b4c6ec95d39a8477131d4ee9f470f3245eb43b78486502c20c54189

Observation 106d6fb2-9314-4949-a0c2-9cbd1aa77f98 · outbound

This paper cites Synthetic Data in Healthcare.

Computational modelling of biological systems now and then: revisiting tools and visions from the beginning of the century Synthetic Data in Healthcare

Reference 53

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source=pdf_text observed=2026-08-10T16:42:14.661128Z digest=sha256:912a387467cc0774d57402b5e6cbf9c7b26f180868fdb3ed76392fb37dd6d4d7

Observation b21918ab-4665-4b9a-9c3c-540d30238bcb · outbound

This paper cites 2019 Improving the clinical understanding of hypertrophic cardiomyopathy by combining patient data, machine learning and computer simulations: A case study.

Computational modelling of biological systems now and then: revisiting tools and visions from the beginning of the century 2019 Improving the clinical understanding of hypertrophic cardiomyopathy by combining patient data, machine learning and computer simulations: A case study

Reference 54

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source=pdf_text observed=2026-08-10T16:42:14.665179Z digest=sha256:531ac95fb0c04409cbe6a833bbe5fc9f1b0b4c51c40c4b49245d49199ba4295a

Observation bdd12bf2-46e1-4600-8afa-fd3956a5c916 · outbound

This paper cites 2021 Machine learning enables non-invasive prediction of atrial fibrillation driver location and acute pulmonary vein ablation success using the 12-lead ECG.

Computational modelling of biological systems now and then: revisiting tools and visions from the beginning of the century 2021 Machine learning enables non-invasive prediction of atrial fibrillation driver location and acute pulmonary vein ablation success using the 12-lead ECG

Reference 55

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Observation 27ed84f1-1b86-4614-9b78-6f61286cf953 · outbound

This paper cites 2022 Hybrid Machine Learning to Localize Atrial Flutter Substrates Using the Surface 12-lead ECG.

Computational modelling of biological systems now and then: revisiting tools and visions from the beginning of the century 2022 Hybrid Machine Learning to Localize Atrial Flutter Substrates Using the Surface 12-lead ECG

Reference 57

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source=pdf_text observed=2026-08-10T16:42:14.677420Z digest=sha256:bef8167176d41630bfb71f89b4e1c1a57338142fcec4c2083d20ec363f7c6f2c

Observation f1d97c3b-6043-42f5-a676-93b1085f0df4 · outbound

This paper cites 2011 Systems biology of the heart: hype or hope?.

Computational modelling of biological systems now and then: revisiting tools and visions from the beginning of the century 2011 Systems biology of the heart: hype or hope?

Reference 59

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source=pdf_text observed=2026-08-10T16:42:14.685234Z digest=sha256:c587b62659261610e58f8f881baa9bb0c75c30da4abb562ccb4e42c07822ca34

Observation b32428f0-3425-4de8-bb25-0f897dd1e0a3 · outbound

This paper cites 2023 Non-invasive Localization of the Ventricular Excitation Origin Without Patient-specific Geometries Using Deep Learning.

Computational modelling of biological systems now and then: revisiting tools and visions from the beginning of the century 2023 Non-invasive Localization of the Ventricular Excitation Origin Without Patient-specific Geometries Using Deep Learning

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source=pdf_text observed=2026-08-10T16:42:14.689023Z digest=sha256:ac9f230875e4fd4827f528d65fee5be2bc1c03697ae2db4d5562a14b8d51d07d

Observation 689479a8-0dda-4261-8058-0b2a1024a72b · outbound

This paper cites 2022 Physics-informed neural networks to learn cardiac fiber orientation from multiple electroanatomical maps.

Computational modelling of biological systems now and then: revisiting tools and visions from the beginning of the century 2022 Physics-informed neural networks to learn cardiac fiber orientation from multiple electroanatomical maps

Reference 61

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source=pdf_text observed=2026-08-10T16:42:14.692625Z digest=sha256:e6d4afe7d359d401960e3f07d54a98fd4b551a3a9b3392e88e16bd59640db99a

Observation 034278cd-877d-4beb-8fd1-d899e269b167 · outbound

This paper cites Physics-informed Neural Network Estimation of Material Properties in Soft Tissue Nonlinear Biomechanical Models.

Computational modelling of biological systems now and then: revisiting tools and visions from the beginning of the century Physics-informed Neural Network Estimation of Material Properties in Soft Tissue Nonlinear Biomechanical Models

Reference 62

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Observation 79e453ef-b8f8-4706-8833-680dd54f3ccc · outbound

This paper cites 2021 EP-PINNs: Cardiac Electrophysiology Characterisation Using Physics-Informed Neural Networks.

Computational modelling of biological systems now and then: revisiting tools and visions from the beginning of the century 2021 EP-PINNs: Cardiac Electrophysiology Characterisation Using Physics-Informed Neural Networks

Reference 63

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source=pdf_text observed=2026-08-10T16:42:14.701310Z digest=sha256:2d618f45d136bb881dc26606c1d240a19e06f66d1533d41ca9690662df9829ae

Observation e89e9bc2-d4e7-4a2a-b6a2-0574373dd0d4 · outbound

This paper cites 2020 Physics-Informed Neural Networks for Cardiac Activation Mapping.

Computational modelling of biological systems now and then: revisiting tools and visions from the beginning of the century 2020 Physics-Informed Neural Networks for Cardiac Activation Mapping

Reference 64

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source=pdf_text observed=2026-08-10T16:42:14.705329Z digest=sha256:958daf442feab1c876c037202174faead30ba39b90cc073f6bb62116a6609972

Observation 71c4a2da-cde7-4ddd-bc2b-fda21d981e3b · outbound

This paper cites 2018 Fitting two human atrial cell models to experimental data using Bayesian history matching.

Computational modelling of biological systems now and then: revisiting tools and visions from the beginning of the century 2018 Fitting two human atrial cell models to experimental data using Bayesian history matching

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source=pdf_text observed=2026-08-10T16:42:14.709153Z digest=sha256:37acb397960820f37f89c78ca3b43bee48e7e0e73ec4395c94f070d605f9ca93

Observation 7a1559d6-24d8-4d54-80c7-f66889aec1d3 · outbound

This paper cites 2023 Cell to whole organ global sensitivity analysis on a four-chamber heart electromechanics model using Gaussian processes emulators.

Computational modelling of biological systems now and then: revisiting tools and visions from the beginning of the century 2023 Cell to whole organ global sensitivity analysis on a four-chamber heart electromechanics model using Gaussian processes emulators

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source=pdf_text observed=2026-08-10T16:42:14.717084Z digest=sha256:aeec012db6d760aa850ff4a97303f35e144349c6d465167e56aa67b8fbd21c4b

Observation bc36e091-e1db-4914-845c-50d8a4993391 · outbound

This paper cites 2021 Accelerating the convergence to a limit cycle in 3D cardiac electromechanical simulations through a data-driven 0D emulator.

Computational modelling of biological systems now and then: revisiting tools and visions from the beginning of the century 2021 Accelerating the convergence to a limit cycle in 3D cardiac electromechanical simulations through a data-driven 0D emulator

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source=pdf_text observed=2026-08-10T16:42:14.721462Z digest=sha256:3352cf88a0020fbdfb90570455ded101e684ffd490eefb19c1f876342fe9d0cb

Observation 638d4c05-f3c7-4046-afe3-e7f40d244c9a · outbound

This paper cites 2021 Ten Simple Rules for FAIR Sharing of Experimental and Clinical Data with the Modeling Community.

Computational modelling of biological systems now and then: revisiting tools and visions from the beginning of the century 2021 Ten Simple Rules for FAIR Sharing of Experimental and Clinical Data with the Modeling Community

Reference 69

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source=pdf_text observed=2026-08-10T16:42:14.725491Z digest=sha256:6a713655f9b5f8b9c7769fd8afda744932163f5c87cccd762d1d02a99ed08d69

Observation 2c212de6-5f49-4fae-9d23-81b75e70c06d · outbound

This paper cites 2021 A bi-atrial statistical shape model for large-scale in silico studies of human atria: model development and application to ECG simulations.

Computational modelling of biological systems now and then: revisiting tools and visions from the beginning of the century 2021 A bi-atrial statistical shape model for large-scale in silico studies of human atria: model development and application to ECG simulations

Reference 70

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source=pdf_text observed=2026-08-10T16:42:14.729216Z digest=sha256:83878fb4c14a665c405803012c381212ac2de4c1195fe226941d69ad558dc513

Observation fe0cefeb-fa74-4892-a331-b8a9745ca1d7 · outbound

This paper cites 2020 A publicly available virtual cohort of four-chamber heart meshes for cardiac electro-mechanics simulations.

Computational modelling of biological systems now and then: revisiting tools and visions from the beginning of the century 2020 A publicly available virtual cohort of four-chamber heart meshes for cardiac electro-mechanics simulations

Reference 71

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source=pdf_text observed=2026-08-10T16:42:14.732713Z digest=sha256:277d4755ffd04d44552ffb4ee16bff0b3b8d06ea14ffbaf6d6a100fef8f734e4

Observation 13ff810f-5d06-4502-b82d-0b411be664f7 · outbound

This paper cites 2019 Universal atrial coordinates applied to visualisa- tion, registration and construction of patient specific meshes.

Computational modelling of biological systems now and then: revisiting tools and visions from the beginning of the century 2019 Universal atrial coordinates applied to visualisa- tion, registration and construction of patient specific meshes

Reference 73

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source=pdf_text observed=2026-08-10T16:42:14.740347Z digest=sha256:9a5a996853be71b861314307a1dbefc9448b1a8b7403f839ca29c50a0c61307b

Observation 249162df-fa57-4ad6-9f94-605021d0f1f0 · outbound

This paper cites an unresolved cited work.

Computational modelling of biological systems now and then: revisiting tools and visions from the beginning of the century Unresolved cited work

Reference 74

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source=pdf_text observed=2026-08-10T16:42:14.744225Z digest=sha256:dacb1f5cb5dc49025c07cb2622cd5c3c5c412dff5ef43e013a153e84db43b643

Observation b962773e-183f-44d0-8045-a85119edad0c · outbound

This paper cites 2012 The San Francisco declaration on research assessment.https://sfdora.org/read/.

Computational modelling of biological systems now and then: revisiting tools and visions from the beginning of the century 2012 The San Francisco declaration on research assessment.https://sfdora.org/read/

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Observation 19ae0253-8f2c-400e-8754-26ba57464021 · outbound

This paper cites 2022 The Agreement on Reforming Research Assess- ment.

Computational modelling of biological systems now and then: revisiting tools and visions from the beginning of the century 2022 The Agreement on Reforming Research Assess- ment

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Observation fd8c70a5-8df2-4fe2-9cd2-fed7c4eaec62 · outbound

This paper cites 2021 An environment for sustainable research software in Germany and beyond: current state, open challenges, and call for action.

Computational modelling of biological systems now and then: revisiting tools and visions from the beginning of the century 2021 An environment for sustainable research software in Germany and beyond: current state, open challenges, and call for action

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source=pdf_text observed=2026-08-10T16:42:14.755494Z digest=sha256:553c9ff0dabf888bc8b99eeed09247458e3b7ba2f44e48c9ac0831e521b9e871

Observation be82302d-ea37-422b-8b32-c49eddcadab9 · outbound

This paper cites 2021 The openCARP Simulation Environment for Cardiac Electrophys- iology.Computer Methods and Programs in Biomedicine208, 106223.

Computational modelling of biological systems now and then: revisiting tools and visions from the beginning of the century 2021 The openCARP Simulation Environment for Cardiac Electrophys- iology.Computer Methods and Programs in Biomedicine208, 106223

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source=pdf_text observed=2026-08-10T16:42:14.759854Z digest=sha256:2d524e54ded9aac7ba540529221626e583682a9317ade5cd3acc81965fcbb461

Observation 80eb7fb7-cb24-4099-9c31-2e081c602050 · outbound

This paper cites 2023 lifex-ep: a robust and efficient software for cardiac electrophysiology simulations.

Computational modelling of biological systems now and then: revisiting tools and visions from the beginning of the century 2023 lifex-ep: a robust and efficient software for cardiac electrophysiology simulations

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source=pdf_text observed=2026-08-10T16:42:14.763878Z digest=sha256:332bbfc12f0408618e11bac4cf72f02273eb79d806e4e6ab1e23855e55d195dc

Observation 79e02066-63cb-4222-8e1c-93e422b6f992 · outbound

This paper cites 2021 OpenEP: A Cross-Platform Electroanatomic Mapping Data Format and Analysis Platform for Electrophysiology Research.Frontiers in Physiology.

Computational modelling of biological systems now and then: revisiting tools and visions from the beginning of the century 2021 OpenEP: A Cross-Platform Electroanatomic Mapping Data Format and Analysis Platform for Electrophysiology Research.Frontiers in Physiology

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source=pdf_text observed=2026-08-10T16:42:14.772487Z digest=sha256:608bd34fd36020a10bf29bcb8366e083f4f7d0fd22349c94457443325aa2ad1a

Observation d5236495-f510-47d1-8c14-8c319863a784 · outbound

This paper cites an unresolved cited work.

Computational modelling of biological systems now and then: revisiting tools and visions from the beginning of the century Unresolved cited work

Reference 82

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no resolver link, observed 2026-08-10T16:42:14.776129Z

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source=pdf_text observed=2026-08-10T16:42:14.776129Z digest=sha256:301d3e6112f29540b88569582df296fe792763c4e6432e05d97c6212534a2587

Observation 4825a840-2495-4fbc-9dc9-1cbc03457888 · outbound

This paper cites 2021 Consistent biventricular coordinates for precise and intuitive description of position in the heart – with MATLAB implementation.

Computational modelling of biological systems now and then: revisiting tools and visions from the beginning of the century 2021 Consistent biventricular coordinates for precise and intuitive description of position in the heart – with MATLAB implementation

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no resolver link, observed 2026-08-10T16:42:14.779989Z

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source=pdf_text observed=2026-08-10T16:42:14.779989Z digest=sha256:9456b9d525d6e5b4aa9e35bfc5aa82ad4c715f22912f0b99e1c59c3fa0fd3c6a

Observation b269d3d5-6453-475f-86b4-96ba75518575 · outbound

This paper cites 2021 A Reproducible Protocol to Assess Arrhythmia Vulnerability in Silico: Pacing at the End of the Effective Refractory Period.

Computational modelling of biological systems now and then: revisiting tools and visions from the beginning of the century 2021 A Reproducible Protocol to Assess Arrhythmia Vulnerability in Silico: Pacing at the End of the Effective Refractory Period

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source=pdf_text observed=2026-08-10T16:42:14.784248Z digest=sha256:163732a1191722cbec2536085e3826e597b4443f3bcc737582a9b1adf66259ec

Observation 8d60280c-6f97-49da-85bb-3aeea743935c · outbound

This paper cites 2022 The openCARP CDE – Concept for and implementation of a sustainable collaborative development environment for research software.

Computational modelling of biological systems now and then: revisiting tools and visions from the beginning of the century 2022 The openCARP CDE – Concept for and implementation of a sustainable collaborative development environment for research software

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No event found in the named queried sources as of 2026-08-16T06:30:59.297886+00:00.

source=pdf_text observed=2026-08-10T16:42:14.788189Z digest=sha256:950a912de2ed7abcc664c11c4d5e692722e385248ab71c7bedf88017f2b76364

Observation 8316862e-54d7-4e77-a90e-bef94ee33dd5 · outbound

This paper cites an unresolved cited work.

Computational modelling of biological systems now and then: revisiting tools and visions from the beginning of the century Unresolved cited work

Reference 86

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No event found in the named queried sources as of 2026-08-16T06:30:59.297886+00:00.

source=pdf_text observed=2026-08-10T16:42:14.791957Z digest=sha256:ddf9e2bb8673fbc621a1decf0b2e0dbd52d6c999ef8e7e2339f1ccb31274fb40

Observation 51ec10ef-a06c-4404-8d0e-e720a379f820 · outbound

This paper cites 2020 Specifications of standards in systems and synthetic biology: status and developments in 2020.

Computational modelling of biological systems now and then: revisiting tools and visions from the beginning of the century 2020 Specifications of standards in systems and synthetic biology: status and developments in 2020

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source=pdf_text observed=2026-08-10T16:42:14.796322Z digest=sha256:a9136fbd3f437f898779f640ec7f88a1fedabf063b5abb2a5c0c74b87ababfd4

Observation d5540432-bc0b-4e91-9a77-86992119fa99 · outbound

This paper cites 2020 Towards standardization guidelines for in silico approaches in personalized medicine.

Computational modelling of biological systems now and then: revisiting tools and visions from the beginning of the century 2020 Towards standardization guidelines for in silico approaches in personalized medicine

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doi_truncated, observed 2026-08-10T16:42:15.782865Z

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source=pdf_text observed=2026-08-10T16:42:14.801462Z digest=sha256:701d59a3c672cd19c86739720f20b0672ab470e27a17e5e8dfa7d0c1b12746f0

Observation 7f82524c-e20c-4b29-b5ab-daa1b4ed22e2 · outbound

This paper cites 2020 CellML 2.0.

Computational modelling of biological systems now and then: revisiting tools and visions from the beginning of the century 2020 CellML 2.0

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source=pdf_text observed=2026-08-10T16:42:14.805388Z digest=sha256:1b6f995735d76c00366475f37b79dfbc0fc6da3d068e3ba337bd2f4bc68ca29a

Observation e8e093fb-b298-448b-89a0-f18b0af2f0de · outbound

This paper cites 2003 The systems biology markup language (SBML): a medium for representation and exchange of biochemical network models.Bioinformatics 19, 524–531.

Computational modelling of biological systems now and then: revisiting tools and visions from the beginning of the century 2003 The systems biology markup language (SBML): a medium for representation and exchange of biochemical network models.Bioinformatics 19, 524–531

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source=pdf_text observed=2026-08-10T16:42:14.809018Z digest=sha256:c4282ac89df647103af34753d9d40043a1ffc4c00f116b98efc9b12556a6dce8

Observation 05384457-288f-4c30-989b-85654c990a24 · outbound

This paper cites 2009 FieldML: concepts and implementation.

Computational modelling of biological systems now and then: revisiting tools and visions from the beginning of the century 2009 FieldML: concepts and implementation

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source=pdf_text observed=2026-08-10T16:42:14.812780Z digest=sha256:1bc59761b7d1d21842c07607b88976931286c45837fd4a53853ee0062a44a828

Observation 37e2663d-1470-4a1a-bec7-b49d6cdd5d11 · outbound

This paper cites 2021 SPARC Data Structure: Rationale and Design of a FAIR Standard for Biomedical Research Data.bioRxiv.

Computational modelling of biological systems now and then: revisiting tools and visions from the beginning of the century 2021 SPARC Data Structure: Rationale and Design of a FAIR Standard for Biomedical Research Data.bioRxiv

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source=pdf_text observed=2026-08-10T16:42:14.816400Z digest=sha256:f6a279059c0d3b46e6bac963c7dda862acb35b006ed1217734ae9105413e7d07

Observation 5c007645-163e-42fd-8975-65279afff4b5 · outbound

This paper cites 2023 GPU Code Generation of Cardiac Electrophysiol- ogy Simulation with MLIR.

Computational modelling of biological systems now and then: revisiting tools and visions from the beginning of the century 2023 GPU Code Generation of Cardiac Electrophysiol- ogy Simulation with MLIR

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source=pdf_text observed=2026-08-10T16:42:14.820205Z digest=sha256:b95b3fd9eab8c57e242f9a00086d8dbe292c8b944927fe69b22d7458e99434a0

Observation b73b4e3a-16a3-44b7-8b4e-863972e57d2d · outbound

This paper cites 2024 ForCEPSS—A framework for cardiac electrophysiol- ogy simulations standardization.

Computational modelling of biological systems now and then: revisiting tools and visions from the beginning of the century 2024 ForCEPSS—A framework for cardiac electrophysiol- ogy simulations standardization

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source=pdf_text observed=2026-08-10T16:42:14.824273Z digest=sha256:41b43eebbb982e3c538eba8e6764d2f4a79167f7dc5f670517e84a6cf039de5d

Observation 60abbc1c-fa8d-471c-9c4a-04fef702f3fc · outbound

This paper cites 2023 Vision for the 12 LABOURS Digital Twin Platform.

Computational modelling of biological systems now and then: revisiting tools and visions from the beginning of the century 2023 Vision for the 12 LABOURS Digital Twin Platform

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source=pdf_text observed=2026-08-10T16:42:14.828021Z digest=sha256:a9454f682b765955d43463dfba1d151e06cf9d981642fc6c2abaafb76da7b5a2

Observation 4c4411e1-fcb2-4eb6-8708-e9a984ada16f · outbound

This paper cites https://www.virtualhumantwins.eu/manifesto.

Computational modelling of biological systems now and then: revisiting tools and visions from the beginning of the century https://www.virtualhumantwins.eu/manifesto

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source=pdf_text observed=2026-08-10T16:42:14.831663Z digest=sha256:d5dd6d09adabf8f34799c19cfd994c107c457958dfa6005449f8f5fe883eaf6e

Observation 788f2bdc-7932-4f8d-bb4c-cb0df2030756 · outbound

This paper cites 2023 EDITH CSA Deliverable 3.2: first draft of the VHT roadmap.

Computational modelling of biological systems now and then: revisiting tools and visions from the beginning of the century 2023 EDITH CSA Deliverable 3.2: first draft of the VHT roadmap

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source=pdf_text observed=2026-08-10T16:42:14.835272Z digest=sha256:3a2f00b2b683e52d6081a5fb632860e6bb85a532683097a67ad382a9a1d3f958

Observation 761da5da-8a97-48b5-96e5-df24adbca58d · outbound

This paper cites 2017 SimVascular: An Open Source Pipeline for Cardiovascular Simulation.

Computational modelling of biological systems now and then: revisiting tools and visions from the beginning of the century 2017 SimVascular: An Open Source Pipeline for Cardiovascular Simulation

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malformed identifier
doi_truncated, observed 2026-08-10T16:42:15.718995Z

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source=pdf_text observed=2026-08-10T16:42:14.839023Z digest=sha256:6b36ba98e5d2b85eecc457ce161821710bc44ac27d3ae8a56d3e55ccc5c12c09

Observation 7b7290cc-37f0-410d-a6fe-81aed4621f17 · outbound

This paper cites 2020 Chaste: Cancer, Heart and Soft Tissue Environment.

Computational modelling of biological systems now and then: revisiting tools and visions from the beginning of the century 2020 Chaste: Cancer, Heart and Soft Tissue Environment

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source=pdf_text observed=2026-08-10T16:42:14.842911Z digest=sha256:d64928cf8dd0095c0bdbcab55cbc505c81c1b040f7d8eab64c4b4a8cf4698ef4

Observation f1fadd0e-708f-49c9-ae38-1559a683e4c9 · outbound

This paper cites 2011 The Physiome Model Repository 2.Bioinformatics 27, 743–744.

Computational modelling of biological systems now and then: revisiting tools and visions from the beginning of the century 2011 The Physiome Model Repository 2.Bioinformatics 27, 743–744

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source=pdf_text observed=2026-08-10T16:42:14.846263Z digest=sha256:1a0d10bd8ff1fe6156712f2be62c32ed4cc8bbf7db6b1c5e45e549f60de51af2

Observation 725a4782-a195-4385-b27a-bc4d6f5396b4 · outbound

This paper cites 1980 Programs, life cycles, and laws of software evolution.Proceedings of the IEEE 68, 1060–1076.

Computational modelling of biological systems now and then: revisiting tools and visions from the beginning of the century 1980 Programs, life cycles, and laws of software evolution.Proceedings of the IEEE 68, 1060–1076

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source=pdf_text observed=2026-08-10T16:42:14.850077Z digest=sha256:12f9b0eb999e5dea7d8ed7b6ba613bfb9c2d8841d374376d9042c45f50ae76f6

Observation 1c3bf158-a90b-429e-8cad-c914ef7a228b · outbound

This paper cites 2024 Physiologists as Medical Scientists: An Early Warning from the German Academic System.

Computational modelling of biological systems now and then: revisiting tools and visions from the beginning of the century 2024 Physiologists as Medical Scientists: An Early Warning from the German Academic System

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Observation cc8cb1c1-0f37-4ef2-88f7-9c7f6f1927b9 · outbound

This paper cites 2023 Computational modeling of cardiac electrophysi- ology and arrhythmogenesis.

Computational modelling of biological systems now and then: revisiting tools and visions from the beginning of the century 2023 Computational modeling of cardiac electrophysi- ology and arrhythmogenesis

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source=pdf_text observed=2026-08-10T16:42:14.857234Z digest=sha256:a42558e1197e1c7a7d0877b5402dc72665759c8d742c796ccddcb99e0dade818

Observation 63ff67b9-7a58-4a33-98f7-a60bbe5a0d70 · outbound

This paper cites 2017 Integrated Heart—Coupling multiscale and multiphysics models for the simulation of the cardiac function.

Computational modelling of biological systems now and then: revisiting tools and visions from the beginning of the century 2017 Integrated Heart—Coupling multiscale and multiphysics models for the simulation of the cardiac function

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source=pdf_text observed=2026-08-10T16:42:14.861024Z digest=sha256:0365899325e011d9f4eb533942bae758cc8d6ccd633ca63c89b4e8fbfb2079b2

Observation 28c26149-0b45-4177-9fa9-27be7d082a80 · outbound

This paper cites 1962 A modification of the Hodgkin-Huxley equations applicable to Purkinje fibre action and pace-maker potentials.

Computational modelling of biological systems now and then: revisiting tools and visions from the beginning of the century 1962 A modification of the Hodgkin-Huxley equations applicable to Purkinje fibre action and pace-maker potentials

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No event found in the named queried sources as of 2026-08-16T06:30:59.297886+00:00.

source=pdf_text observed=2026-08-10T16:42:14.865344Z digest=sha256:6cfeededa4f841ec3a03bcb81d87c22b29b3e9286394431fbbf72361be27b590

Observation c16ae2e2-56b7-4b91-b4ca-7821e472c7e2 · outbound

This paper cites an unresolved cited work.

Computational modelling of biological systems now and then: revisiting tools and visions from the beginning of the century Unresolved cited work

Reference 106

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source=pdf_text observed=2026-08-10T16:42:14.869138Z digest=sha256:2933f86fb683c7546a760fd5b74e9c3e5f427c077f4e1822603ac091b620cec1

Observation 35224c94-c14c-4a47-8b94-66598559982c · outbound

This paper cites 2014 ECG-Based Detection of Early Myocardial Ischemia in a Computational Model: Impact of Additional Electrodes, Optimal Placement, and a New Feature for ST Deviation.

Computational modelling of biological systems now and then: revisiting tools and visions from the beginning of the century 2014 ECG-Based Detection of Early Myocardial Ischemia in a Computational Model: Impact of Additional Electrodes, Optimal Placement, and a New Feature for ST Deviation

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source=pdf_text observed=2026-08-10T16:42:14.873094Z digest=sha256:8823e7278c9d839c22291a0a370c356bae679672d3faf41a5bc11addecf56c28

Pith citing papers

No inbound Pith citation observations are available.