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inlabru: software for fitting latent Gaussian models with non-linear predictors

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arxiv 2407.00791 v1 pith:56NPRZ2Y submitted 2024-06-30 stat.ME stat.CO

classification stat.MEstat.CO
keywords inlamodelsinlabrumethodapproximatefittinglatentmodel
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The integrated nested Laplace approximation (INLA) method has become a popular approach for computationally efficient approximate Bayesian computation. In particular, by leveraging sparsity in random effect precision matrices, INLA is commonly used in spatial and spatio-temporal applications. However, the speed of INLA comes at the cost of restricting the user to the family of latent Gaussian models and the likelihoods currently implemented in {INLA}, the main software implementation of the INLA methodology. {inlabru} is a software package that extends the types of models that can be fitted using INLA by allowing the latent predictor to be non-linear in its parameters, moving beyond the additive linear predictor framework to allow more complex functional relationships. For inference it uses an approximate iterative method based on the first-order Taylor expansion of the non-linear predictor, fitting the model using INLA for each linearised model configuration. {inlabru} automates much of the workflow required to fit models using {R-INLA}, simplifying the process for users to specify, fit and predict from models. There is additional support for fitting joint likelihood models by building each likelihood individually. {inlabru} also supports the direct use of spatial data structures, such as those implemented in the {sf} and {terra} packages. In this paper we outline the statistical theory, model structure and basic syntax required for users to understand and develop their own models using {inlabru}. We evaluate the approximate inference method using a Bayesian method checking approach. We provide three examples modelling simulated spatial data that demonstrate the benefits of the additional flexibility provided by {inlabru}.

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Cited by 4 Pith papers

Reviewed papers in the Pith corpus that reference this work. Sorted by Pith novelty score. Full citation record

  1. Overcoming Standardization: Revealing Hidden Age Patterns of Suicide with Spatiotemporal Models

    stat.ME 2025-07 conditional novelty 5.0 of 10

    Age-structured Bayesian spatiotemporal models outperform indirect standardization for suicide-call data and reveal that younger age groups experienced the steepest risk increase from 2021 onward.

  2. Influence of river incision on landslides triggered in Nepal by the Gorkha earthquake: Results from a pixel-based susceptibility model using inlabru

    stat.AP 2025-07 conditional novelty 5.0 of 10

    A pixel-based Bayesian model of Gorkha earthquake landslides finds that channel steepness predicts landslide location but not size.

  3. Linking climate and dengue in the Philippines using a two-stage Bayesian spatio-temporal model

    stat.AP 2025-06 reject novelty 5.0 of 10

    A national-scale Bayesian model finds temperature positively but nonlinearly associated with dengue in the Philippines, and rainfall effects that differ between the wet-east and seasonal-west climate zones.

  4. Advances in Approximate Bayesian Inference for Models in Epidemiology

    stat.ME 2025-04 conditional novelty 2.0 of 10

    A review of ABC, BSL, INLA, and VI for epidemic modeling, with a decision tree for method selection and hybrid exact-approximate inference proposed as the next frontier.

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