Typed states for the displayed outbound observations.
Source: paper_references, paper_reference_links, observed 2026-08-12T13:35:41.247616Z
Paper Citation Record · LEDGER
As of 13 August 2026, this Paper Citation Record lists 57 of 57 outbound references and 0 inbound Pith citation observations for arXiv:2411.16084.
A citation records a reference. It does not transfer a finding from one paper to another.
Typed states for the displayed outbound observations.
Source: paper_references, paper_reference_links, observed 2026-08-12T13:35:41.247616Z
One-hop event checks from named stored sources.
Source: scholarly_work_events, retraction_status_cache, observed 2026-08-12T06:34:41.77262+00:00
Pith citing papers itemized under the disclosed page cap.
Source: paper_references, paper_reference_links
A source-named dated measurement, never combined with another source.
Source: cited_works
57 of 57 outbound references displayed
External citation measurements
No source-named external measurement is stored.
Observation 86cd630e-eb49-40c1-b5c2-748597bf4b08 · outbound
Deciphering genomic codes using advanced NLP techniques: a scoping review Representation learning applications in biological sequence analysis
Reference 1
Source-reported events for the cited work
No event found in the named queried sources as of 2026-08-12T06:34:41.77262+00:00.
Observation 2ff0bd6c-fdb0-4302-91d1-576aa652d897 · outbound
Deciphering genomic codes using advanced NLP techniques: a scoping review Large models for genomics
Reference 2
Source-reported events for the cited work
No event found in the named queried sources as of 2026-08-12T06:34:41.77262+00:00.
Observation 0a749b65-412a-4b3a-bf36-1d98e4279fef · outbound
Deciphering genomic codes using advanced NLP techniques: a scoping review Human genome, 2024
Reference 3
Source-reported events for the cited work
No event found in the named queried sources as of 2026-08-12T06:34:41.77262+00:00.
Observation 42dc4d07-66bd-4911-b7e6-51df447ef4b0 · outbound
Deciphering genomic codes using advanced NLP techniques: a scoping review McPherson, and W
Reference 4
Source-reported events for the cited work
No event found in the named queried sources as of 2026-08-12T06:34:41.77262+00:00.
Observation 5e48ad9b-3ea9-4853-87d9-ea68c2630216 · outbound
Deciphering genomic codes using advanced NLP techniques: a scoping review Effect of tokenization on transformers for biological sequences
Reference 5
Source-reported events for the cited work
No event found in the named queried sources as of 2026-08-12T06:34:41.77262+00:00.
Observation 134e137d-0b9a-4d95-a996-135f09337a25 · outbound
Deciphering genomic codes using advanced NLP techniques: a scoping review Enhancing machine learning prediction in computational chemistry by chemical language representa- tions
Reference 6
Source-reported events for the cited work
Unavailable: canonical work link unavailable.
Observation 0a57294c-c2b2-4948-b1cc-0496eb6f3efd · outbound
Deciphering genomic codes using advanced NLP techniques: a scoping review To Transformers and Beyond: Large Language Models for the Genome
Reference 7
Source-reported events for the cited work
Unavailable: canonical work link unavailable.
Observation 040f3e51-6f08-40bd-806b-58ecc03ca7a8 · outbound
Deciphering genomic codes using advanced NLP techniques: a scoping review Transformer architecture and attention mechanisms in genome data analysis: A comprehensive review
Reference 8
Source-reported events for the cited work
No event found in the named queried sources as of 2026-08-12T06:34:41.77262+00:00.
Observation 74ec0c31-c602-45e9-8fdc-bfeb959d5a93 · outbound
Deciphering genomic codes using advanced NLP techniques: a scoping review melbourne, australia, 2024
Reference 9
Source-reported events for the cited work
No event found in the named queried sources as of 2026-08-12T06:34:41.77262+00:00.
Observation 086c21b8-c135-4b80-8a12-1c4ad111f1eb · outbound
Deciphering genomic codes using advanced NLP techniques: a scoping review Novel transformer networks for improved sequence labeling in genomics
Reference 10
Source-reported events for the cited work
No event found in the named queried sources as of 2026-08-12T06:34:41.77262+00:00.
Observation df75abff-61f8-4271-88cf-6530d63f7269 · outbound
Deciphering genomic codes using advanced NLP techniques: a scoping review Cpg island detection using transformer model with conditional random field
Reference 11
Source-reported events for the cited work
No event found in the named queried sources as of 2026-08-12T06:34:41.77262+00:00.
Observation dbe764a4-5caf-4aec-91bb-46a46f188363 · outbound
Deciphering genomic codes using advanced NLP techniques: a scoping review Davuluri
Reference 12
Source-reported events for the cited work
Unavailable: canonical work link unavailable.
Observation 1739629d-9fd8-4982-bf7e-90bf67bc67e1 · outbound
Deciphering genomic codes using advanced NLP techniques: a scoping review A trans- former architecture based on bert and 2d convolutional neural network to identify dna enhancers from sequence information
Reference 13
Source-reported events for the cited work
No event found in the named queried sources as of 2026-08-12T06:34:41.77262+00:00.
Observation 79bbb8c2-0edb-45f3-8aba-de43991d37fd · outbound
Deciphering genomic codes using advanced NLP techniques: a scoping review Bert-promoter: An improved sequence-based predictor of dna promoter using bert pre-trained model and shap feature selection
Reference 14
Source-reported events for the cited work
No event found in the named queried sources as of 2026-08-12T06:34:41.77262+00:00.
Observation 16c2663f-fc62-45df-a870-12c12ded22e7 · outbound
Deciphering genomic codes using advanced NLP techniques: a scoping review Improving language model of human genome for dna–protein binding prediction based on task-specific pre-training
Reference 15
Source-reported events for the cited work
No event found in the named queried sources as of 2026-08-12T06:34:41.77262+00:00.
Observation cd60b858-4a5b-42af-819a-152a338bb900 · outbound
Deciphering genomic codes using advanced NLP techniques: a scoping review Gene- mask: Fast pretraining of gene sequences to enable few-shot learning
Reference 17
Source-reported events for the cited work
Unavailable: canonical work link unavailable.
Observation 0ce6a08a-f3ac-49a5-9d25-a6de375e4f87 · outbound
Deciphering genomic codes using advanced NLP techniques: a scoping review Bert-5mc: an interpretable model for predicting 5-methylcytosine sites of dna based on bert
Reference 18
Source-reported events for the cited work
No event found in the named queried sources as of 2026-08-12T06:34:41.77262+00:00.
Observation f8fc12f9-7cb7-4836-b504-7cb3e62f6133 · outbound
Deciphering genomic codes using advanced NLP techniques: a scoping review Genome-wide identi- fication and characterization of dna enhancers with a stacked multivariate fusion framework
Reference 19
Source-reported events for the cited work
No event found in the named queried sources as of 2026-08-12T06:34:41.77262+00:00.
Observation 033b0b35-da17-44db-8614-8c195ceb19d1 · outbound
Deciphering genomic codes using advanced NLP techniques: a scoping review Predicting protein- dna binding sites by fine-tuning bert
Reference 20
Source-reported events for the cited work
No event found in the named queried sources as of 2026-08-12T06:34:41.77262+00:00.
Observation a697653b-463b-4dcf-a266-9196d5f3ec86 · outbound
Deciphering genomic codes using advanced NLP techniques: a scoping review Semanticcap: Chromatin accessibility prediction enhanced by features learning from a language model
Reference 21
Source-reported events for the cited work
Unavailable: canonical work link unavailable.
Observation dae1327f-5641-4344-9cfe-6cf1f8db6d47 · outbound
Deciphering genomic codes using advanced NLP techniques: a scoping review Unresolved cited work
Reference 22
Source-reported events for the cited work
No event found in the named queried sources as of 2026-08-12T06:34:41.77262+00:00.
Observation ff6c0499-0074-4285-8105-2a5ccefc09ad · outbound
Deciphering genomic codes using advanced NLP techniques: a scoping review Cpg island detection using modified transformer model with pre–trained embedding
Reference 23
Source-reported events for the cited work
Unavailable: canonical work link unavailable.
Observation 8659c2c7-8727-4b5d-a366-fc99c143b2d9 · outbound
Deciphering genomic codes using advanced NLP techniques: a scoping review Unresolved cited work
Reference 24
Source-reported events for the cited work
Unavailable: canonical work link unavailable.
Observation 9c255376-725d-4e4f-9598-b1ae654556f6 · outbound
Deciphering genomic codes using advanced NLP techniques: a scoping review Unresolved cited work
Reference 25
Source-reported events for the cited work
No event found in the named queried sources as of 2026-08-12T06:34:41.77262+00:00.
Observation b0708dfd-b387-4c42-96c5-d6dc81f0f6c8 · outbound
Deciphering genomic codes using advanced NLP techniques: a scoping review Predicting gene expression levels from dna sequences and post-transcriptional information with transformers
Reference 26
Source-reported events for the cited work
Unavailable: canonical work link unavailable.
Observation 2861161f-6f94-49ca-9e0c-e8920f20d53e · outbound
Deciphering genomic codes using advanced NLP techniques: a scoping review Mt- tlm6a: A multi-task transfer learning approach for base-resolution mrna m6a site prediction based on an improved transformer
Reference 27
Source-reported events for the cited work
No event found in the named queried sources as of 2026-08-12T06:34:41.77262+00:00.
Observation 0e71fa5c-49d0-4dd6-bf3b-2a725a7c39e1 · outbound
Deciphering genomic codes using advanced NLP techniques: a scoping review Mscan: multi- scale self- and cross-attention network for rna methylation site prediction
Reference 28
Source-reported events for the cited work
Unavailable: canonical work link unavailable.
Observation 4b2da2f4-76cf-451c-b7b1-bf40a612f7c1 · outbound
Deciphering genomic codes using advanced NLP techniques: a scoping review An efficient circrna-mirna interaction prediction model by combining biological text mining and wavelet diffusion-based sparse network structure embedding
Reference 29
Source-reported events for the cited work
Unavailable: canonical work link unavailable.
Observation 682679b0-093b-491b-a707-59764b5817a9 · outbound
Deciphering genomic codes using advanced NLP techniques: a scoping review Bcmcmi: A fusion model for predicting circrna-mirna interactions combining semantic and meta-path
Reference 30
Source-reported events for the cited work
No event found in the named queried sources as of 2026-08-12T06:34:41.77262+00:00.
Observation cabda990-da5d-4708-8fc2-48564a66020c · outbound
Deciphering genomic codes using advanced NLP techniques: a scoping review Tmsc-m7g: A transformer architecture based on multi- sense-scaled embedding features and convolutional neural network to identify rna n7-methylguanosine 16 sites
Reference 31
Source-reported events for the cited work
No event found in the named queried sources as of 2026-08-12T06:34:41.77262+00:00.
Observation 92f48a6d-abcd-430e-8436-beaaa6b5d1bc · outbound
Deciphering genomic codes using advanced NLP techniques: a scoping review mitds: Uncovering mirna-mrna interactions with deep learning for functional target prediction
Reference 32
Source-reported events for the cited work
No event found in the named queried sources as of 2026-08-12T06:34:41.77262+00:00.
Observation 81e85fc0-1d44-4999-8c99-9c9993af83f9 · outbound
Deciphering genomic codes using advanced NLP techniques: a scoping review Transformer- based gene scoring model for extracting representative characteristic of central dogma process to pri- oritize pathogenic genes applying breast cancer multi-omics data
Reference 33
Source-reported events for the cited work
Unavailable: canonical work link unavailable.
Observation 9aeca21a-ae16-45ee-9ce3-a4afdcff84e2 · outbound
Deciphering genomic codes using advanced NLP techniques: a scoping review Transformer-based dna methylation detection on ionic signals from oxford nanopore sequencing data
Reference 34
Source-reported events for the cited work
No event found in the named queried sources as of 2026-08-12T06:34:41.77262+00:00.
Observation 419024f1-0800-4974-b9d9-835db70ccf5e · outbound
Deciphering genomic codes using advanced NLP techniques: a scoping review Alzheimer’s disease classification through imaging genetic data with ignet
Reference 35
Source-reported events for the cited work
Unavailable: canonical work link unavailable.
Observation 47fa1374-640c-43e3-a984-f1af0c31e0ba · outbound
Deciphering genomic codes using advanced NLP techniques: a scoping review Setquence & setomic: Deep set transformer-based representations of cancer multi-omics
Reference 36
Source-reported events for the cited work
No event found in the named queried sources as of 2026-08-12T06:34:41.77262+00:00.
Observation c36fbe3e-3918-42c4-8859-a98425d0bfbd · outbound
Deciphering genomic codes using advanced NLP techniques: a scoping review BERT: Pre-training of deep bidirectional transformers for language understanding
Reference 37
Source-reported events for the cited work
No event found in the named queried sources as of 2026-08-12T06:34:41.77262+00:00.
Observation 7c815e99-5618-489c-9107-0f4d74a8bd1e · outbound
Deciphering genomic codes using advanced NLP techniques: a scoping review Unresolved cited work
Reference 38
Source-reported events for the cited work
No event found in the named queried sources as of 2026-08-12T06:34:41.77262+00:00.
Observation 8280d6f6-952c-4ddd-96a2-85afbc89096a · outbound
Deciphering genomic codes using advanced NLP techniques: a scoping review Conditional random fields: probabilistic models for segmenting and labeling sequence data
Reference 39
Source-reported events for the cited work
No event found in the named queried sources as of 2026-08-12T06:34:41.77262+00:00.
Observation a618857e-272e-4918-b4ac-fc8064c7f373 · outbound
Deciphering genomic codes using advanced NLP techniques: a scoping review scGPT: toward building a foundation model for single-cell multi-omics using generative AI
Reference 40
Source-reported events for the cited work
Unavailable: canonical work link unavailable.
Observation ea7cc066-8c7e-4faa-afd6-9e73455079e9 · outbound
Deciphering genomic codes using advanced NLP techniques: a scoping review Nlp course - chapter 6, section 5: Byte-pair encoding, 2024
Reference 41
Source-reported events for the cited work
No event found in the named queried sources as of 2026-08-12T06:34:41.77262+00:00.
Observation 6a895ade-6caf-43ca-b692-c0bc6f88fd8e · outbound
Deciphering genomic codes using advanced NLP techniques: a scoping review Schwartz, Katherine E
Reference 42
Source-reported events for the cited work
No event found in the named queried sources as of 2026-08-12T06:34:41.77262+00:00.
Observation 7628ae82-e24e-4f10-8a09-dd19ce2b4b18 · outbound
Deciphering genomic codes using advanced NLP techniques: a scoping review Effect of tokenization on transformers for biological sequences
Reference 43
Source-reported events for the cited work
No event found in the named queried sources as of 2026-08-12T06:34:41.77262+00:00.
Observation 7d439bc6-117b-49c6-a98d-c37c99a3852c · outbound
Deciphering genomic codes using advanced NLP techniques: a scoping review Genomic Language Models: Opportunities and Challenges
Reference 44
Source-reported events for the cited work
Unavailable: canonical work link unavailable.
Observation f015fd48-2dd9-4812-b284-4b6803c135b6 · outbound
Deciphering genomic codes using advanced NLP techniques: a scoping review Gene co-expression network analysis reveals common system-level properties of prognostic genes across cancer types
Reference 47
Source-reported events for the cited work
No event found in the named queried sources as of 2026-08-12T06:34:41.77262+00:00.
Observation 2d4c62d2-b1d6-4801-9dde-2a3f7e33d961 · outbound
Deciphering genomic codes using advanced NLP techniques: a scoping review Unresolved cited work
Reference 48
Source-reported events for the cited work
No event found in the named queried sources as of 2026-08-12T06:34:41.77262+00:00.
Observation dd3dd784-3886-4bcf-9268-be037a9c33af · outbound
Deciphering genomic codes using advanced NLP techniques: a scoping review Unresolved cited work
Reference 50
Source-reported events for the cited work
No event found in the named queried sources as of 2026-08-12T06:34:41.77262+00:00.
Observation 7728301d-6716-4af7-a9be-5f6ac8088d71 · outbound
Deciphering genomic codes using advanced NLP techniques: a scoping review Unresolved cited work
Reference 51
Source-reported events for the cited work
No event found in the named queried sources as of 2026-08-12T06:34:41.77262+00:00.
Observation 908fee17-721e-4702-b6ba-09a07598906a · outbound
Deciphering genomic codes using advanced NLP techniques: a scoping review Unresolved cited work
Reference 54
Source-reported events for the cited work
No event found in the named queried sources as of 2026-08-12T06:34:41.77262+00:00.
Observation ff4c958e-e2d5-47a0-b7c8-e090d8e384f6 · outbound
Deciphering genomic codes using advanced NLP techniques: a scoping review Unresolved cited work
Reference 55
Source-reported events for the cited work
No event found in the named queried sources as of 2026-08-12T06:34:41.77262+00:00.
Observation 4c09f513-a8d1-4ff7-a152-df95ef4af80d · outbound
Deciphering genomic codes using advanced NLP techniques: a scoping review Unresolved cited work
Reference 56
Source-reported events for the cited work
No event found in the named queried sources as of 2026-08-12T06:34:41.77262+00:00.
Observation 46a6afb1-870a-428d-8159-91a87c2fb5f3 · outbound
Deciphering genomic codes using advanced NLP techniques: a scoping review Unresolved cited work
Reference 57
Source-reported events for the cited work
No event found in the named queried sources as of 2026-08-12T06:34:41.77262+00:00.
Observation 71590727-a45c-4c0d-b2e8-90c0c4ebc45b · outbound
Deciphering genomic codes using advanced NLP techniques: a scoping review Unresolved cited work
Reference 58
Source-reported events for the cited work
No event found in the named queried sources as of 2026-08-12T06:34:41.77262+00:00.
Observation ec503701-0c08-489a-8cb7-4854a5674a9c · outbound
Deciphering genomic codes using advanced NLP techniques: a scoping review Unresolved cited work
Reference 59
Source-reported events for the cited work
No event found in the named queried sources as of 2026-08-12T06:34:41.77262+00:00.
Observation 38fb4d6c-d7b5-461b-b67f-93752f6f683a · outbound
Deciphering genomic codes using advanced NLP techniques: a scoping review Unresolved cited work
Reference 60
Source-reported events for the cited work
No event found in the named queried sources as of 2026-08-12T06:34:41.77262+00:00.
Observation f67bf071-902a-4a64-80be-d122b56a8d7f · outbound
Deciphering genomic codes using advanced NLP techniques: a scoping review Unresolved cited work
Reference 61
Source-reported events for the cited work
No event found in the named queried sources as of 2026-08-12T06:34:41.77262+00:00.
Observation 2f479bfd-3b06-4dfd-8ee2-342b24d8ca5c · outbound
Deciphering genomic codes using advanced NLP techniques: a scoping review doi: 10.18653/v1/N19-1423
Reference 2019
Source-reported events for the cited work
Unavailable: canonical work link unavailable.
Observation 4232d313-388d-4e59-bf09-5ec3a9c29b03 · outbound
Deciphering genomic codes using advanced NLP techniques: a scoping review Unresolved cited work
Reference 2022
Source-reported events for the cited work
Unavailable: canonical work link unavailable.
No inbound Pith citation observations are available.